EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000061032 (Gene tree)
Gene ID: 18114
Gene Symbol: Rrp1
Alias: NNP-1|Nnp1
Full Name: ribosomal RNA processing 1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 12660 bases
Position: chr10:78400384-78413043
Accession: 1203500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000058785	Nop52	PF05997.12	3.9e-69	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219406	-	695	-	-	- (aa)	-	-
ENSMUST00000217835	-	845	-	-	- (aa)	-	-
ENSMUST00000062678	-	1984	XM_006513338	ENSMUSP00000058785	494 (aa)	XP_006513401	P56183
ENSMUST00000219374	-	1852	-	ENSMUSP00000151634	82 (aa)	-	A0A1W2P7C5
ENSMUST00000219141	-	582	-	-	- (aa)	-	-
ENSMUST00000219901	-	566	-	-	- (aa)	-	-
ENSMUST00000218962	-	600	-	-	- (aa)	-	-
ENSMUST00000217824	-	576	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000061032's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000061032's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000061032	Rrp1	56	53.043	ENSMUSG00000058392	Rrp1b	53	65.079

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000061032	Rrp1	78	44.845	ENSG00000160208	RRP1B	58	39.759	Homo_sapiens
ENSMUSG00000061032	Rrp1	96	62.076	ENSG00000160214	RRP1	96	86.047	Homo_sapiens
ENSMUSG00000061032	Rrp1	98	58.167	ENSAMEG00000011448	RRP1	98	80.080	Ailuropoda_melanoleuca
ENSMUSG00000061032	Rrp1	69	42.353	ENSACIG00000019121	rrp1	81	37.665	Amphilophus_citrinellus
ENSMUSG00000061032	Rrp1	76	54.032	ENSAOCG00000017894	-	75	54.508	Amphiprion_ocellaris
ENSMUSG00000061032	Rrp1	68	59.471	ENSACAG00000017851	RRP1B	52	44.325	Anolis_carolinensis
ENSMUSG00000061032	Rrp1	82	64.198	ENSANAG00000037815	RRP1	99	55.192	Aotus_nancymaae
ENSMUSG00000061032	Rrp1	79	81.223	ENSBTAG00000003981	RRP1	95	76.378	Bos_taurus
ENSMUSG00000061032	Rrp1	89	64.172	ENSCJAG00000043205	RRP1	82	63.676	Callithrix_jacchus
ENSMUSG00000061032	Rrp1	99	60.526	ENSCAFG00000010646	RRP1	99	59.476	Canis_familiaris
ENSMUSG00000061032	Rrp1	85	42.019	ENSCAFG00020018901	RRP1B	55	56.667	Canis_lupus_dingo
ENSMUSG00000061032	Rrp1	99	57.143	ENSCAFG00020018979	RRP1	99	58.039	Canis_lupus_dingo
ENSMUSG00000061032	Rrp1	94	41.495	ENSCHIG00000021519	RRP1B	54	53.750	Capra_hircus
ENSMUSG00000061032	Rrp1	79	81.659	ENSCHIG00000020948	RRP1	91	81.013	Capra_hircus
ENSMUSG00000061032	Rrp1	99	56.275	ENSTSYG00000012831	RRP1	99	56.420	Carlito_syrichta
ENSMUSG00000061032	Rrp1	81	56.068	ENSCAPG00000008576	RRP1	92	54.762	Cavia_aperea
ENSMUSG00000061032	Rrp1	98	57.800	ENSCPOG00000038986	RRP1	98	57.400	Cavia_porcellus
ENSMUSG00000061032	Rrp1	99	61.663	ENSCCAG00000029828	RRP1	99	59.417	Cebus_capucinus
ENSMUSG00000061032	Rrp1	64	83.691	ENSCATG00000015632	RRP1	90	80.645	Cercocebus_atys
ENSMUSG00000061032	Rrp1	96	61.845	ENSCLAG00000011639	RRP1	98	60.000	Chinchilla_lanigera
ENSMUSG00000061032	Rrp1	78	66.408	ENSCSAG00000007936	RRP1	100	65.633	Chlorocebus_sabaeus
ENSMUSG00000061032	Rrp1	56	40.385	ENSCING00000003304	-	70	40.385	Ciona_intestinalis
ENSMUSG00000061032	Rrp1	90	56.951	ENSCANG00000042611	RRP1	83	56.278	Colobus_angolensis_palliatus
ENSMUSG00000061032	Rrp1	98	75.155	ENSCGRG00001011920	Rrp1	97	74.327	Cricetulus_griseus_chok1gshd
ENSMUSG00000061032	Rrp1	60	54.852	ENSCGRG00001023882	-	55	66.667	Cricetulus_griseus_chok1gshd
ENSMUSG00000061032	Rrp1	98	75.155	ENSCGRG00000008915	Rrp1	97	74.327	Cricetulus_griseus_crigri
ENSMUSG00000061032	Rrp1	84	43.333	ENSCSEG00000020711	-	64	53.252	Cynoglossus_semilaevis
ENSMUSG00000061032	Rrp1	63	58.333	ENSCVAG00000017568	-	88	42.574	Cyprinodon_variegatus
ENSMUSG00000061032	Rrp1	95	58.178	ENSDNOG00000019880	RRP1	99	70.383	Dasypus_novemcinctus
ENSMUSG00000061032	Rrp1	89	59.735	ENSDORG00000002104	Rrp1	97	60.841	Dipodomys_ordii
ENSMUSG00000061032	Rrp1	55	82.222	ENSETEG00000002963	-	67	75.758	Echinops_telfairi
ENSMUSG00000061032	Rrp1	80	79.913	ENSEASG00005001673	RRP1	99	58.753	Equus_asinus_asinus
ENSMUSG00000061032	Rrp1	80	79.913	ENSECAG00000015703	RRP1	99	59.155	Equus_caballus
ENSMUSG00000061032	Rrp1	96	40.000	ENSELUG00000015885	-	87	51.626	Esox_lucius
ENSMUSG00000061032	Rrp1	78	82.479	ENSFCAG00000008434	RRP1	98	79.839	Felis_catus
ENSMUSG00000061032	Rrp1	69	56.735	ENSFCAG00000010272	RRP1B	51	56.735	Felis_catus
ENSMUSG00000061032	Rrp1	67	51.477	ENSFALG00000002024	RRP1B	50	58.919	Ficedula_albicollis
ENSMUSG00000061032	Rrp1	84	80.000	ENSFDAG00000013728	RRP1	98	56.574	Fukomys_damarensis
ENSMUSG00000061032	Rrp1	74	59.664	ENSGALG00000035696	RRP1B	52	58.000	Gallus_gallus
ENSMUSG00000061032	Rrp1	80	43.939	ENSGACG00000001438	rrp1	52	52.778	Gasterosteus_aculeatus
ENSMUSG00000061032	Rrp1	78	44.845	ENSGGOG00000012069	RRP1B	58	39.759	Gorilla_gorilla
ENSMUSG00000061032	Rrp1	96	62.076	ENSGGOG00000000173	RRP1	99	58.157	Gorilla_gorilla
ENSMUSG00000061032	Rrp1	83	40.238	ENSHGLG00000004968	RRP1B	60	53.947	Heterocephalus_glaber_female
ENSMUSG00000061032	Rrp1	76	81.116	ENSHGLG00000017085	RRP1	94	58.000	Heterocephalus_glaber_female
ENSMUSG00000061032	Rrp1	83	33.333	ENSHGLG00100002232	RRP1B	50	46.703	Heterocephalus_glaber_male
ENSMUSG00000061032	Rrp1	95	59.583	ENSSTOG00000011116	RRP1	92	81.526	Ictidomys_tridecemlineatus
ENSMUSG00000061032	Rrp1	96	79.856	ENSJJAG00000018886	Rrp1	98	65.918	Jaculus_jaculus
ENSMUSG00000061032	Rrp1	79	45.361	ENSKMAG00000005539	rrp1	51	45.876	Kryptolebias_marmoratus
ENSMUSG00000061032	Rrp1	94	43.162	ENSLAFG00000000766	RRP1B	99	43.284	Loxodonta_africana
ENSMUSG00000061032	Rrp1	99	57.114	ENSLAFG00000022901	RRP1	98	74.219	Loxodonta_africana
ENSMUSG00000061032	Rrp1	98	58.949	ENSMFAG00000003202	RRP1	99	56.923	Macaca_fascicularis
ENSMUSG00000061032	Rrp1	98	58.949	ENSMMUG00000012304	RRP1	99	57.774	Macaca_mulatta
ENSMUSG00000061032	Rrp1	98	58.171	ENSMNEG00000031210	RRP1	99	57.006	Macaca_nemestrina
ENSMUSG00000061032	Rrp1	75	64.879	ENSMLEG00000037797	RRP1	99	55.602	Mandrillus_leucophaeus
ENSMUSG00000061032	Rrp1	69	59.746	ENSMGAG00000014591	RRP1B	53	58.000	Meleagris_gallopavo
ENSMUSG00000061032	Rrp1	83	74.138	ENSMAUG00000017653	Rrp1	98	61.807	Mesocricetus_auratus
ENSMUSG00000061032	Rrp1	99	61.446	ENSMICG00000004700	RRP1	99	60.317	Microcebus_murinus
ENSMUSG00000061032	Rrp1	99	68.421	ENSMOCG00000015687	Rrp1	99	63.653	Microtus_ochrogaster
ENSMUSG00000061032	Rrp1	72	58.824	ENSMODG00000021033	RRP1B	50	56.746	Monodelphis_domestica
ENSMUSG00000061032	Rrp1	60	66.245	ENSMODG00000021036	-	52	50.372	Monodelphis_domestica
ENSMUSG00000061032	Rrp1	80	43.939	ENSMALG00000010310	rrp1	80	58.333	Monopterus_albus
ENSMUSG00000061032	Rrp1	57	51.739	MGP_CAROLIEiJ_G0021376	Rrp1b	53	63.492	Mus_caroli
ENSMUSG00000061032	Rrp1	100	96.761	MGP_CAROLIEiJ_G0015508	Rrp1	100	96.761	Mus_caroli
ENSMUSG00000061032	Rrp1	100	91.532	MGP_PahariEiJ_G0030921	Rrp1	100	92.540	Mus_pahari
ENSMUSG00000061032	Rrp1	57	53.478	MGP_PahariEiJ_G0023695	Rrp1b	53	63.492	Mus_pahari
ENSMUSG00000061032	Rrp1	100	98.785	MGP_SPRETEiJ_G0016321	Rrp1	100	98.785	Mus_spretus
ENSMUSG00000061032	Rrp1	57	53.913	MGP_SPRETEiJ_G0022290	Rrp1b	53	65.079	Mus_spretus
ENSMUSG00000061032	Rrp1	91	63.274	ENSMPUG00000009826	RRP1	99	58.776	Mustela_putorius_furo
ENSMUSG00000061032	Rrp1	98	61.647	ENSMLUG00000017788	RRP1	98	60.039	Myotis_lucifugus
ENSMUSG00000061032	Rrp1	98	56.939	ENSNGAG00000022344	Rrp1	99	56.122	Nannospalax_galili
ENSMUSG00000061032	Rrp1	96	61.134	ENSNLEG00000034734	RRP1	99	57.774	Nomascus_leucogenys
ENSMUSG00000061032	Rrp1	57	80.851	ENSOPRG00000001319	RRP1	97	71.542	Ochotona_princeps
ENSMUSG00000061032	Rrp1	77	53.826	ENSOANG00000006472	-	94	65.833	Ornithorhynchus_anatinus
ENSMUSG00000061032	Rrp1	78	53.886	ENSOCUG00000022843	-	98	54.321	Oryctolagus_cuniculus
ENSMUSG00000061032	Rrp1	90	58.444	ENSOGAG00000006105	RRP1	98	58.980	Otolemur_garnettii
ENSMUSG00000061032	Rrp1	86	40.058	ENSOARG00000011314	RRP1B	52	53.202	Ovis_aries
ENSMUSG00000061032	Rrp1	79	82.096	ENSOARG00000011434	RRP1	91	81.435	Ovis_aries
ENSMUSG00000061032	Rrp1	96	62.288	ENSPPAG00000029050	RRP1	99	59.846	Pan_paniscus
ENSMUSG00000061032	Rrp1	71	43.305	ENSPPAG00000035319	RRP1B	56	38.013	Pan_paniscus
ENSMUSG00000061032	Rrp1	78	82.051	ENSPPRG00000010656	RRP1	94	79.435	Panthera_pardus
ENSMUSG00000061032	Rrp1	88	42.045	ENSPTIG00000019473	RRP1	71	62.319	Panthera_tigris_altaica
ENSMUSG00000061032	Rrp1	78	44.845	ENSPTRG00000013958	RRP1B	58	39.759	Pan_troglodytes
ENSMUSG00000061032	Rrp1	96	62.500	ENSPTRG00000013962	RRP1	99	59.309	Pan_troglodytes
ENSMUSG00000061032	Rrp1	98	56.530	ENSPANG00000015097	RRP1	99	58.641	Papio_anubis
ENSMUSG00000061032	Rrp1	85	47.129	ENSPSIG00000008152	RRP1B	50	59.756	Pelodiscus_sinensis
ENSMUSG00000061032	Rrp1	67	50.000	ENSPMGG00000007512	-	79	50.000	Periophthalmus_magnuspinnatus
ENSMUSG00000061032	Rrp1	98	72.131	ENSPEMG00000018421	Rrp1	97	74.174	Peromyscus_maniculatus_bairdii
ENSMUSG00000061032	Rrp1	93	49.237	ENSPCIG00000015523	-	68	62.992	Phascolarctos_cinereus
ENSMUSG00000061032	Rrp1	70	55.702	ENSPMEG00000007042	-	50	54.098	Poecilia_mexicana
ENSMUSG00000061032	Rrp1	96	61.311	ENSPPYG00000011474	RRP1	99	58.960	Pongo_abelii
ENSMUSG00000061032	Rrp1	54	79.545	ENSPCAG00000008370	-	69	66.142	Procavia_capensis
ENSMUSG00000061032	Rrp1	99	58.661	ENSPCOG00000017706	RRP1	99	58.893	Propithecus_coquereli
ENSMUSG00000061032	Rrp1	55	86.667	ENSPVAG00000009925	-	77	56.429	Pteropus_vampyrus
ENSMUSG00000061032	Rrp1	55	95.556	ENSRNOG00000001203	Rrp1	100	76.162	Rattus_norvegicus
ENSMUSG00000061032	Rrp1	83	65.450	ENSRBIG00000032082	RRP1	99	58.687	Rhinopithecus_bieti
ENSMUSG00000061032	Rrp1	98	57.198	ENSRROG00000039799	RRP1	99	57.115	Rhinopithecus_roxellana
ENSMUSG00000061032	Rrp1	87	74.638	ENSSBOG00000034689	RRP1	98	78.884	Saimiri_boliviensis_boliviensis
ENSMUSG00000061032	Rrp1	58	64.423	ENSSHAG00000010304	-	82	64.423	Sarcophilus_harrisii
ENSMUSG00000061032	Rrp1	80	45.202	ENSSMAG00000016847	-	86	52.869	Scophthalmus_maximus
ENSMUSG00000061032	Rrp1	72	80.769	ENSSSCG00000037061	RRP1	98	55.689	Sus_scrofa
ENSMUSG00000061032	Rrp1	54	60.396	ENSTGUG00000005926	RRP1B	54	60.099	Taeniopygia_guttata
ENSMUSG00000061032	Rrp1	80	45.202	ENSTRUG00000017592	rrp1	97	44.332	Takifugu_rubripes
ENSMUSG00000061032	Rrp1	58	56.667	ENSTNIG00000005053	rrp1	54	56.667	Tetraodon_nigroviridis
ENSMUSG00000061032	Rrp1	88	38.864	ENSTBEG00000000422	RRP1B	50	55.721	Tupaia_belangeri
ENSMUSG00000061032	Rrp1	59	69.032	ENSTBEG00000001260	-	58	68.276	Tupaia_belangeri
ENSMUSG00000061032	Rrp1	55	84.444	ENSTTRG00000011162	RRP1	82	72.059	Tursiops_truncatus
ENSMUSG00000061032	Rrp1	74	49.740	ENSUAMG00000014189	-	97	76.336	Ursus_americanus
ENSMUSG00000061032	Rrp1	61	56.158	ENSUMAG00000025510	RRP1B	56	56.158	Ursus_maritimus
ENSMUSG00000061032	Rrp1	90	55.819	ENSUMAG00000025507	RRP1	98	78.836	Ursus_maritimus
ENSMUSG00000061032	Rrp1	55	85.106	ENSVVUG00000024498	-	78	49.189	Vulpes_vulpes
ENSMUSG00000061032	Rrp1	69	54.651	ENSXETG00000013683	rrp1b	63	56.098	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	IEA	Component