EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000061136 (Gene tree)
Gene ID: 56194
Gene Symbol: Prpf40a
Alias: 2810012K09Rik|FBP11|Fnbp3
Full Name: pre-mRNA processing factor 40A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 56581
Position: chr2: 53134704-53191284
Accession: 1860512
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000133384	-	597	-	-	- (aa)	-	-
ENSMUST00000211102	-	1074	-	ENSMUSP00000148161	84 (aa)	-	A0A1B0GT17
ENSMUST00000076313	-	7374	XM_006498192	ENSMUSP00000075655	953 (aa)	XP_006498255	Q9R1C7
ENSMUST00000152922	-	3065	-	-	- (aa)	-	-
ENSMUST00000132031	-	665	-	-	- (aa)	-	-
ENSMUST00000211712	-	2227	-	ENSMUSP00000147939	87 (aa)	-	A0A1B0GSH6
ENSMUST00000209508	-	1290	-	ENSMUSP00000147910	129 (aa)	-	A0A1B0GSF1
ENSMUST00000209364	-	2833	XM_006498194	ENSMUSP00000147671	926 (aa)	XP_006498257	A0A1B0GRU8
ENSMUST00000125243	-	1425	-	ENSMUSP00000117406	100 (aa)	-	A2AQW6
ENSMUST00000210789	-	3773	-	ENSMUSP00000147599	911 (aa)	-	Q9R1C7

Gene Model

Click here to download ENSMUSG00000061136's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000061136's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000061136	Prpf40a	88	40.871	FBgn0031492	CG3542	63	45.769	Drosophila_melanogaster
ENSMUSG00000061136	Prpf40a	100	96.344	ENSG00000196504	PRPF40A	100	96.344	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	9171351.16391387.	IPI	Function
GO:0005634	nucleus	11092755.	IDA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007010	cytoskeleton organization	-	ISO	Process
GO:0008360	regulation of cell shape	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016363	nuclear matrix	16391387.	IDA	Component
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016477	cell migration	-	ISO	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0032465	regulation of cytokinesis	-	ISO	Process
GO:0045292	mRNA cis splicing, via spliceosome	-	IEA	Process
GO:0070064	proline-rich region binding	17915251.	IDA	Function
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component