EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135949	-	1764	-	ENSMUSP00000138706	255 (aa)	-	S4R2M7
ENSMUST00000081593	-	1825	-	ENSMUSP00000080302	417 (aa)	-	P09411
ENSMUST00000133559	-	731	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00010	Glycolysis / Gluconeogenesis	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG
mmu04066	HIF-1 signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000062070	Pgk1	99	72.771	WBGene00020185	pgk-1	99	72.771	Caenorhabditis_elegans
ENSMUSG00000062070	Pgk1	100	97.842	ENSG00000102144	PGK1	100	97.842	Homo_sapiens
ENSMUSG00000062070	Pgk1	99	67.063	YCR012W		99	64.819	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0004618	phosphoglycerate kinase activity	21873635.	IBA	Function
GO:0004618	phosphoglycerate kinase activity	943046.6852525.17248765.	IDA	Function
GO:0004618	phosphoglycerate kinase activity	-	ISO	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005615	extracellular space	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005975	carbohydrate metabolic process	-	ISO	Process
GO:0006094	gluconeogenesis	21873635.	IBA	Process
GO:0006094	gluconeogenesis	-	ISO	Process
GO:0006096	glycolytic process	21873635.	IBA	Process
GO:0006096	glycolytic process	15665293.	IDA	Process
GO:0006096	glycolytic process	-	ISO	Process
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016525	negative regulation of angiogenesis	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0031639	plasminogen activation	-	ISO	Process
GO:0043531	ADP binding	21873635.	IBA	Function
GO:0043531	ADP binding	-	ISO	Function
GO:0045121	membrane raft	-	ISO	Component
GO:0047134	protein-disulfide reductase activity	-	ISO	Function
GO:0071456	cellular response to hypoxia	-	ISO	Process
GO:1903862	positive regulation of oxidative phosphorylation	21873635.	IBA	Process