EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000062727 (Gene tree)
Gene ID: 319184
Gene Symbol: Hist1h2bk
Alias: -
Full Name: histone cluster 1%2C H2bk
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 476
Position: chr13: 22035870-22036345
Accession: 2448399
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000110455	-	476	-	ENSMUSP00000106085	126 (aa)	-	Q8CGP1

Gene Model

Click here to download ENSMUSG00000062727's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05034	Alcoholism	KEGG
mmu05203	Viral carcinogenesis	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000062727's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000062727	Hist1h2bk	100	98.413	ENSMUSG00000018102	Hist1h2bc	100	98.413	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000786	nucleosome	-	IEA	Component
GO:0002227	innate immune response in mucosa	-	ISO	Process
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005615	extracellular space	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006334	nucleosome assembly	21873635.	IBA	Process
GO:0019731	antibacterial humoral response	-	ISO	Process
GO:0031640	killing of cells of other organism	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	IEA	Function
GO:0050829	defense response to Gram-negative bacterium	-	ISO	Process
GO:0050830	defense response to Gram-positive bacterium	-	ISO	Process
GO:0061844	antimicrobial humoral immune response mediated by antimicrobial peptide	-	ISO	Process