EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000106215	-	1827	-	ENSMUSP00000101822	375 (aa)	-	P63260
ENSMUST00000071555	-	1952	-	ENSMUSP00000071486	375 (aa)	-	P63260
ENSMUST00000141406	-	864	-	-	- (aa)	-	-
ENSMUST00000089616	-	326	-	ENSMUSP00000087043	105 (aa)	-	F8WGM8
ENSMUST00000131103	-	1189	-	ENSMUSP00000134070	132 (aa)	-	G3UYG0
ENSMUST00000128055	-	1021	-	ENSMUSP00000134296	268 (aa)	-	G3UZ07
ENSMUST00000062147	-	876	-	ENSMUSP00000101821	153 (aa)	-	B1ATY1
ENSMUST00000156343	-	807	-	-	- (aa)	-	-
ENSMUST00000144868	-	449	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04015	Rap1 signaling pathway	KEGG
mmu04145	Phagosome	KEGG
mmu04210	Apoptosis	KEGG
mmu04390	Hippo signaling pathway	KEGG
mmu04510	Focal adhesion	KEGG
mmu04520	Adherens junction	KEGG
mmu04530	Tight junction	KEGG
mmu04611	Platelet activation	KEGG
mmu04670	Leukocyte transendothelial migration	KEGG
mmu04714	Thermogenesis	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu04919	Thyroid hormone signaling pathway	KEGG
mmu04921	Oxytocin signaling pathway	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG
mmu05132	Salmonella infection	KEGG
mmu05164	Influenza A	KEGG
mmu05205	Proteoglycans in cancer	KEGG
mmu05225	Hepatocellular carcinoma	KEGG
mmu05410	Hypertrophic cardiomyopathy (HCM)	KEGG
mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	KEGG
mmu05414	Dilated cardiomyopathy (DCM)	KEGG
mmu05416	Viral myocarditis	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000062825	Actg1	99	97.059	WBGene00000066	act-4	100	97.892	Caenorhabditis_elegans
ENSMUSG00000062825	Actg1	99	97.059	WBGene00000064	act-2	99	97.059	Caenorhabditis_elegans
ENSMUSG00000062825	Actg1	100	91.489	YFL039C	ACT1	100	89.067	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	15194427.	IDA	Function
GO:0005515	protein binding	19423573.	IPI	Function
GO:0005522	profilin binding	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0015629	actin cytoskeleton	15194427.	IDA	Component
GO:0030016	myofibril	15194427.	IDA	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0031941	filamentous actin	18796539.	IDA	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0043034	costamere	15194427.	TAS	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044305	calyx of Held	27840001.	IDA	Component
GO:0044305	calyx of Held	27840001.	IMP	Component
GO:0045214	sarcomere organization	15194427.	IDA	Process
GO:0045335	phagocytic vesicle	19144319.	IDA	Component
GO:0048488	synaptic vesicle endocytosis	27840001.	IDA	Process
GO:0048488	synaptic vesicle endocytosis	27840001.	IMP	Process
GO:0070062	extracellular exosome	-	ISO	Component
GO:0071346	cellular response to interferon-gamma	19144319.	IDA	Process
GO:0098685	Schaffer collateral - CA1 synapse	27840001.	IDA	Component
GO:0098685	Schaffer collateral - CA1 synapse	27840001.	IMP	Component
GO:0098871	postsynaptic actin cytoskeleton	-	ISO	Component
GO:0098973	structural constituent of postsynaptic actin cytoskeleton	-	ISO	Function
GO:0099143	presynaptic actin cytoskeleton	-	ISO	Component