EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000063450 (Gene tree)
Gene ID: 319565
Gene Symbol: Syne2
Alias: 6820443O06Rik|Cpfl8|D12Ertd777e|Nesp2g|dice|diminished cone electroretinogram|nesprin-2|syne-2
Full Name: spectrin repeat containing%2C nuclear envelope 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 292793
Position: chr12: 75818134-76110926
Accession: 2449316
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000124685	-	3018	-	-	- (aa)	-	-
ENSMUST00000154762	-	682	-	-	- (aa)	-	-
ENSMUST00000132161	-	3606	-	ENSMUSP00000122781	733 (aa)	-	F7BX34
ENSMUST00000139204	-	5789	-	ENSMUSP00000118921	1644 (aa)	-	F6W8R9
ENSMUST00000157033	-	2121	-	-	- (aa)	-	-
ENSMUST00000151286	-	742	-	-	- (aa)	-	-
ENSMUST00000142864	-	440	-	ENSMUSP00000119268	112 (aa)	-	D3Z2J8
ENSMUST00000154509	-	684	-	ENSMUSP00000116718	125 (aa)	-	D3Z412
ENSMUST00000150317	-	1974	-	ENSMUSP00000118142	528 (aa)	-	Q6ZWN0
ENSMUST00000148324	-	639	-	ENSMUSP00000121517	82 (aa)	-	D3Z2P5
ENSMUST00000131480	-	913	-	ENSMUSP00000114364	269 (aa)	-	D3YVK9
ENSMUST00000044217	-	21690	-	ENSMUSP00000047697	6874 (aa)	-	Q6ZWQ0
ENSMUST00000143031	-	21704	-	ENSMUSP00000119120	6870 (aa)	-	E9QP46
ENSMUST00000085280	-	7335	-	ENSMUSP00000082383	2152 (aa)	-	Q6DFZ2
ENSMUST00000148825	-	585	-	ENSMUSP00000120371	195 (aa)	-	F6VTU3
ENSMUST00000133623	-	1624	-	-	- (aa)	-	-
ENSMUST00000126903	-	778	-	ENSMUSP00000115053	74 (aa)	-	D6RH38

Gene Model

Click here to download ENSMUSG00000063450's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000063450's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000063450	Syne2	100	96.396	ENSG00000054654	SYNE2	100	98.990	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	20724637.	IDA	Function
GO:0005515	protein binding	24880667.26688217.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	15671068.20457914.26506308.	IDA	Component
GO:0005635	nuclear envelope	18477613.	IMP	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005640	nuclear outer membrane	18396275.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005813	centrosome	21873635.	IBA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0006998	nuclear envelope organization	18477613.	IMP	Process
GO:0007097	nuclear migration	-	ISO	Process
GO:0007163	establishment or maintenance of cell polarity	18477613.	IMP	Process
GO:0010457	centriole-centriole cohesion	21873635.	IBA	Process
GO:0010761	fibroblast migration	18477613.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016235	aggresome	-	ISO	Component
GO:0016529	sarcoplasmic reticulum	-	ISO	Component
GO:0021817	nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration	19874786.	IMP	Process
GO:0030016	myofibril	15671068.	IDA	Component
GO:0030018	Z disc	15671068.	IDA	Component
GO:0030018	Z disc	-	ISO	Component
GO:0030335	positive regulation of cell migration	20724637.	IMP	Process
GO:0031022	nuclear migration along microfilament	20724637.	IMP	Process
GO:0031258	lamellipodium membrane	-	ISO	Component
GO:0031527	filopodium membrane	-	ISO	Component
GO:0031965	nuclear membrane	22349700.	IDA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0031981	nuclear lumen	-	ISO	Component
GO:0034504	protein localization to nucleus	18477613.	IMP	Process
GO:0034993	meiotic nuclear membrane microtubule tethering complex	-	ISO	Component
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0051015	actin filament binding	-	IEA	Function
GO:0051642	centrosome localization	19596800.19874786.20724637.	IMP	Process
GO:0051642	centrosome localization	-	ISO	Process
GO:0090286	cytoskeletal anchoring at nuclear membrane	-	ISO	Process
GO:1902017	regulation of cilium assembly	19596800.	IMP	Process