EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000063511 (Gene tree)
Gene ID: 20637
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|Rnulp70|Snrp70|Srnp70|U1-70
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 19290 bases
Position: chr7:45376453-45395742
Accession: 98341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000074160	RRM_1	PF00076.22	1.4e-17	1	1
ENSMUSP00000147636	RRM_1	PF00076.22	5.2e-13	1	1
ENSMUSP00000148112	RRM_1	PF00076.22	2.7e-08	1	1
ENSMUSP00000147375	RRM_1	PF00076.22	2.8e-08	1	1
ENSMUSP00000147400	U1snRNP70_N	PF12220.8	7.1e-29	1	1
ENSMUSP00000147636	U1snRNP70_N	PF12220.8	1.9e-28	1	1
ENSMUSP00000074160	U1snRNP70_N	PF12220.8	2.5e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000210808	-	579	-	-	- (aa)	-	-
ENSMUST00000210495	-	733	-	-	- (aa)	-	-
ENSMUST00000209993	-	707	-	ENSMUSP00000147368	116 (aa)	-	A0A1B0GR44
ENSMUST00000074575	-	1735	XM_006540732	ENSMUSP00000074160	448 (aa)	XP_006540795	Q62376
ENSMUST00000210374	-	623	-	-	- (aa)	-	-
ENSMUST00000211178	-	2922	-	-	- (aa)	-	-
ENSMUST00000209858	-	618	XM_006540733	ENSMUSP00000147636	168 (aa)	XP_006540796	A0A1B0GRR8
ENSMUST00000209237	-	601	-	-	- (aa)	-	-
ENSMUST00000210970	-	212	-	-	- (aa)	-	-
ENSMUST00000211378	-	616	-	ENSMUSP00000147682	111 (aa)	-	A0A1B0GRV8
ENSMUST00000211290	-	3035	NR_126538	-	- (aa)	-	-
ENSMUST00000211121	-	620	-	ENSMUSP00000147400	109 (aa)	-	A0A1B0GR69
ENSMUST00000211366	-	4008	NR_126539	-	- (aa)	-	-
ENSMUST00000210583	-	1897	-	-	- (aa)	-	-
ENSMUST00000210514	-	451	-	ENSMUSP00000147375	86 (aa)	-	A0A1B0GR50
ENSMUST00000210661	-	618	-	-	- (aa)	-	-
ENSMUST00000211211	-	462	-	ENSMUSP00000148112	84 (aa)	-	A0A1B0GSX5

Gene Model

Click here to download ENSMUSG00000063511's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000063511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000063511	Snrnp70	52	35.000	ENSMUSG00000025977	Boll	58	32.911
ENSMUSG00000063511	Snrnp70	71	46.667	ENSMUSG00000029402	Snrnp35	61	48.649

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000063511	Snrnp70	100	100.000	ENSG00000104852	SNRNP70	100	100.000	Homo_sapiens
ENSMUSG00000063511	Snrnp70	100	91.743	ENSAPOG00000009322	snrnp70	89	88.028	Acanthochromis_polyacanthus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSAMEG00000014468	SNRNP70	100	93.096	Ailuropoda_melanoleuca
ENSMUSG00000063511	Snrnp70	100	91.743	ENSAOCG00000011672	snrnp70	50	83.482	Amphiprion_ocellaris
ENSMUSG00000063511	Snrnp70	100	97.248	ENSACAG00000013276	SNRNP70	51	97.297	Anolis_carolinensis
ENSMUSG00000063511	Snrnp70	100	100.000	ENSANAG00000036787	SNRNP70	99	97.561	Aotus_nancymaae
ENSMUSG00000063511	Snrnp70	100	100.000	ENSBTAG00000048800	-	99	97.561	Bos_taurus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCJAG00000000193	SNRNP70	99	98.814	Callithrix_jacchus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCAFG00000003711	SNRNP70	99	97.561	Canis_familiaris
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCAFG00020025470	SNRNP70	100	93.778	Canis_lupus_dingo
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCHIG00000018534	-	99	97.561	Capra_hircus
ENSMUSG00000063511	Snrnp70	100	86.992	ENSTSYG00000032350	-	99	86.992	Carlito_syrichta
ENSMUSG00000063511	Snrnp70	99	98.795	ENSCAPG00000017198	-	98	98.795	Cavia_aperea
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCPOG00000019589	SNRNP70	100	95.759	Cavia_porcellus
ENSMUSG00000063511	Snrnp70	96	97.531	ENSCCAG00000036551	SNRNP70	100	94.015	Cebus_capucinus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCATG00000016149	SNRNP70	100	94.889	Cercocebus_atys
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCLAG00000007991	SNRNP70	100	95.536	Chinchilla_lanigera
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCSAG00000002759	SNRNP70	100	92.889	Chlorocebus_sabaeus
ENSMUSG00000063511	Snrnp70	100	99.083	ENSCPBG00000014841	SNRNP70	51	99.099	Chrysemys_picta_bellii
ENSMUSG00000063511	Snrnp70	88	77.027	ENSCSAVG00000010109	-	50	70.681	Ciona_savignyi
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCANG00000036607	SNRNP70	99	99.187	Colobus_angolensis_palliatus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCGRG00001020676	Snrnp70	100	98.884	Cricetulus_griseus_chok1gshd
ENSMUSG00000063511	Snrnp70	100	100.000	ENSCGRG00000018048	Snrnp70	100	98.884	Cricetulus_griseus_crigri
ENSMUSG00000063511	Snrnp70	100	90.826	ENSCSEG00000011978	snrnp70	99	91.480	Cynoglossus_semilaevis
ENSMUSG00000063511	Snrnp70	100	90.826	ENSCVAG00000003912	snrnp70	100	90.625	Cyprinodon_variegatus
ENSMUSG00000063511	Snrnp70	100	88.991	ENSDARG00000077126	snrnp70	99	88.820	Danio_rerio
ENSMUSG00000063511	Snrnp70	100	100.000	ENSDNOG00000035849	-	99	97.561	Dasypus_novemcinctus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSDORG00000010228	Snrnp70	100	95.323	Dipodomys_ordii
ENSMUSG00000063511	Snrnp70	81	100.000	ENSETEG00000005009	SNRNP70	74	100.000	Echinops_telfairi
ENSMUSG00000063511	Snrnp70	100	100.000	ENSEASG00005004917	SNRNP70	100	95.759	Equus_asinus_asinus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSECAG00000013936	-	99	97.561	Equus_caballus
ENSMUSG00000063511	Snrnp70	90	95.192	ENSEEUG00000005666	SNRNP70	53	77.391	Erinaceus_europaeus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSFCAG00000042603	SNRNP70	55	100.000	Felis_catus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSFDAG00000013830	SNRNP70	98	100.000	Fukomys_damarensis
ENSMUSG00000063511	Snrnp70	100	89.908	ENSGMOG00000011492	snrnp70	97	91.403	Gadus_morhua
ENSMUSG00000063511	Snrnp70	100	90.826	ENSGACG00000000448	snrnp70	70	91.928	Gasterosteus_aculeatus
ENSMUSG00000063511	Snrnp70	95	80.102	ENSGAGG00000012628	SNRNP70	99	80.000	Gopherus_agassizii
ENSMUSG00000063511	Snrnp70	100	100.000	ENSGGOG00000008245	SNRNP70	99	97.561	Gorilla_gorilla
ENSMUSG00000063511	Snrnp70	100	100.000	ENSHGLG00100001651	-	99	97.561	Heterocephalus_glaber_male
ENSMUSG00000063511	Snrnp70	100	100.000	ENSSTOG00000013988	-	99	97.561	Ictidomys_tridecemlineatus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSJJAG00000002614	Snrnp70	100	95.759	Jaculus_jaculus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSLAFG00000028536	SNRNP70	100	100.000	Loxodonta_africana
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMFAG00000039824	SNRNP70	100	94.889	Macaca_fascicularis
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMMUG00000004928	SNRNP70	99	97.561	Macaca_mulatta
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMNEG00000038057	SNRNP70	100	92.444	Macaca_nemestrina
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMLEG00000030967	SNRNP70	100	94.889	Mandrillus_leucophaeus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMAUG00000020970	Snrnp70	100	98.661	Mesocricetus_auratus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMICG00000038437	SNRNP70	100	99.190	Microcebus_murinus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMOCG00000012825	Snrnp70	100	99.107	Microtus_ochrogaster
ENSMUSG00000063511	Snrnp70	100	100.000	MGP_CAROLIEiJ_G0029714	Snrnp70	100	100.000	Mus_caroli
ENSMUSG00000063511	Snrnp70	100	100.000	MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	Mus_pahari
ENSMUSG00000063511	Snrnp70	100	100.000	MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	Mus_spretus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMPUG00000003258	SNRNP70	100	95.089	Mustela_putorius_furo
ENSMUSG00000063511	Snrnp70	100	100.000	ENSMLUG00000011766	SNRNP70	100	95.536	Myotis_lucifugus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSNGAG00000021191	Snrnp70	99	100.000	Nannospalax_galili
ENSMUSG00000063511	Snrnp70	100	90.826	ENSNBRG00000003126	snrnp70	96	92.377	Neolamprologus_brichardi
ENSMUSG00000063511	Snrnp70	94	100.000	ENSNLEG00000004899	SNRNP70	98	99.177	Nomascus_leucogenys
ENSMUSG00000063511	Snrnp70	100	100.000	ENSODEG00000017499	SNRNP70	100	95.000	Octodon_degus
ENSMUSG00000063511	Snrnp70	100	90.826	ENSONIG00000007822	snrnp70	52	91.928	Oreochromis_niloticus
ENSMUSG00000063511	Snrnp70	100	99.083	ENSOANG00000005213	SNRNP70	97	99.550	Ornithorhynchus_anatinus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSOCUG00000015081	SNRNP70	50	100.000	Oryctolagus_cuniculus
ENSMUSG00000063511	Snrnp70	100	99.091	ENSOGAG00000029310	SNRNP70	100	95.323	Otolemur_garnettii
ENSMUSG00000063511	Snrnp70	100	100.000	ENSOARG00000012608	SNRNP70	93	100.000	Ovis_aries
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPPAG00000035067	SNRNP70	99	100.000	Pan_paniscus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPPRG00000005579	SNRNP70	100	95.089	Panthera_pardus
ENSMUSG00000063511	Snrnp70	100	89.189	ENSPTIG00000018250	-	99	89.189	Panthera_tigris_altaica
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPTRG00000011277	SNRNP70	100	99.602	Pan_troglodytes
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPANG00000004068	SNRNP70	100	94.889	Papio_anubis
ENSMUSG00000063511	Snrnp70	100	84.404	ENSPKIG00000019992	snrnp70	85	80.745	Paramormyrops_kingsleyae
ENSMUSG00000063511	Snrnp70	100	99.083	ENSPSIG00000015251	SNRNP70	90	85.217	Pelodiscus_sinensis
ENSMUSG00000063511	Snrnp70	100	90.826	ENSPMGG00000010153	snrnp70	78	90.798	Periophthalmus_magnuspinnatus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPEMG00000019011	Snrnp70	100	99.107	Peromyscus_maniculatus_bairdii
ENSMUSG00000063511	Snrnp70	100	79.817	ENSPMAG00000008502	snrnp70	97	83.422	Petromyzon_marinus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPCIG00000007296	SNRNP70	52	100.000	Phascolarctos_cinereus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSPPYG00000010234	SNRNP70	100	94.444	Pongo_abelii
ENSMUSG00000063511	Snrnp70	96	97.531	ENSPCOG00000023103	SNRNP70	82	91.739	Propithecus_coquereli
ENSMUSG00000063511	Snrnp70	96	97.531	ENSPVAG00000009578	SNRNP70	100	92.634	Pteropus_vampyrus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSRBIG00000042387	SNRNP70	100	94.667	Rhinopithecus_bieti
ENSMUSG00000063511	Snrnp70	100	100.000	ENSRROG00000033636	SNRNP70	100	94.889	Rhinopithecus_roxellana
ENSMUSG00000063511	Snrnp70	100	100.000	ENSSBOG00000020026	SNRNP70	99	97.561	Saimiri_boliviensis_boliviensis
ENSMUSG00000063511	Snrnp70	100	100.000	ENSSHAG00000002194	SNRNP70	52	100.000	Sarcophilus_harrisii
ENSMUSG00000063511	Snrnp70	100	99.083	ENSSPUG00000016621	SNRNP70	52	98.649	Sphenodon_punctatus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSSSCG00000023792	-	99	97.561	Sus_scrofa
ENSMUSG00000063511	Snrnp70	100	89.908	ENSTNIG00000014186	-	99	90.000	Tetraodon_nigroviridis
ENSMUSG00000063511	Snrnp70	100	100.000	ENSTTRG00000017099	SNRNP70	100	95.100	Tursiops_truncatus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSUAMG00000016147	SNRNP70	100	95.089	Ursus_americanus
ENSMUSG00000063511	Snrnp70	100	100.000	ENSUMAG00000001467	SNRNP70	99	97.561	Ursus_maritimus
ENSMUSG00000063511	Snrnp70	100	99.083	ENSVPAG00000005959	-	100	80.995	Vicugna_pacos
ENSMUSG00000063511	Snrnp70	100	100.000	ENSVVUG00000022976	SNRNP70	99	97.561	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0016607	nuclear speck	17656373.	IDA	Component
GO:0030619	U1 snRNA binding	-	ISO	Function
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	23636947.	IMP	Process
GO:1990446	U1 snRNP binding	-	ISO	Function