EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000063550 (Gene tree)
Gene ID: 269966
Gene Symbol: Nup98
Alias: Nup96
Full Name: nucleoporin 98
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 90779
Position: chr7: 102119398-102210176
Accession: 109404
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000211235	-	3748	-	ENSMUSP00000147486	1170 (aa)	-	B2RQL0
ENSMUST00000211764	-	689	-	ENSMUSP00000147807	230 (aa)	-	A0A1B0GS62
ENSMUST00000211022	-	3132	-	ENSMUSP00000147454	967 (aa)	-	A0A1B0GRB5
ENSMUST00000211005	-	3961	-	ENSMUSP00000147445	984 (aa)	-	A0A1B0GRA7
ENSMUST00000210682	-	6694	XM_006507895	ENSMUSP00000148115	1816 (aa)	XP_006507958	A0A1B0GSX7
ENSMUST00000209242	-	3198	-	-	- (aa)	-	-
ENSMUST00000211375	-	2823	-	-	- (aa)	-	-
ENSMUST00000070165	-	4052	-	ENSMUSP00000068530	1187 (aa)	-	A0A140T8J8

Gene Model

Click here to download ENSMUSG00000063550's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000063550's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000063550	Nup98	99	94.937	ENSG00000110713	NUP98	99	95.289	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000776	kinetochore	-	ISO	Component
GO:0000973	posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	21873635.	IBA	Process
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	15615787.	IDA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006260	DNA replication	-	ISO	Process
GO:0006405	RNA export from nucleus	21873635.	IBA	Process
GO:0006508	proteolysis	-	IEA	Process
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006606	protein import into nucleus	-	ISO	Process
GO:0008139	nuclear localization sequence binding	21873635.	IBA	Function
GO:0008139	nuclear localization sequence binding	-	ISO	Function
GO:0008233	peptidase activity	-	IEA	Function
GO:0008236	serine-type peptidase activity	-	IEA	Function
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISO	Function
GO:0031080	nuclear pore outer ring	-	ISO	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0034398	telomere tethering at nuclear periphery	21873635.	IBA	Process
GO:0034399	nuclear periphery	-	ISO	Component
GO:0042277	peptide binding	-	ISO	Function
GO:0042405	nuclear inclusion body	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0044614	nuclear pore cytoplasmic filaments	21873635.	IBA	Component
GO:0044615	nuclear pore nuclear basket	-	ISO	Component
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0051292	nuclear pore complex assembly	-	ISO	Process
GO:1990841	promoter-specific chromatin binding	-	ISO	Function
GO:1990904	ribonucleoprotein complex	-	ISO	Component