EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000063800 (Gene tree)
Gene ID
230596
Gene Symbol
Prpf38a
Alias
2410002M20Rik
Full Name
PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
16165 bases
Position
chr4:108563172-108579336
Accession
1916962
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000078207PRP38PF03371.154.8e-6111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000079213-1516-ENSMUSP00000078207312 (aa)-Q4FK66
ENSMUST00000125106-2889--- (aa)--
ENSMUST00000132951-2219--- (aa)--
Gene Model
Click here to download ENSMUSG00000063800's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000063800's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000063800Prpf38a10098.718ENSG00000134748PRPF38A10098.718Homo_sapiens
ENSMUSG00000063800Prpf38a7188.235ENSAPOG00000011652prpf38a10081.470Acanthochromis_polyacanthus
ENSMUSG00000063800Prpf38a10098.718ENSAMEG00000009319PRPF38A10098.718Ailuropoda_melanoleuca
ENSMUSG00000063800Prpf38a7185.973ENSACIG00000012292prpf38a10075.000Amphilophus_citrinellus
ENSMUSG00000063800Prpf38a7188.235ENSAOCG00000018004prpf38a10081.470Amphiprion_ocellaris
ENSMUSG00000063800Prpf38a7188.235ENSAPEG00000021414prpf38a10081.470Amphiprion_percula
ENSMUSG00000063800Prpf38a7188.688ENSATEG00000004608prpf38a10081.470Anabas_testudineus
ENSMUSG00000063800Prpf38a7997.166ENSAPLG00000005827PRPF38A9997.166Anas_platyrhynchos
ENSMUSG00000063800Prpf38a10094.551ENSACAG00000008249PRPF38A10094.551Anolis_carolinensis
ENSMUSG00000063800Prpf38a10067.722ENSANAG00000029204-10062.342Aotus_nancymaae
ENSMUSG00000063800Prpf38a10098.718ENSANAG00000027839PRPF38A10098.718Aotus_nancymaae
ENSMUSG00000063800Prpf38a7185.973ENSACLG00000021595prpf38a10079.872Astatotilapia_calliptera
ENSMUSG00000063800Prpf38a10082.109ENSAMXG00000029274prpf38a10082.109Astyanax_mexicanus
ENSMUSG00000063800Prpf38a10098.718ENSBTAG00000002720PRPF38A10098.718Bos_taurus
ENSMUSG00000063800Prpf38a6361.026WBGene00008380prp-386760.185Caenorhabditis_elegans
ENSMUSG00000063800Prpf38a10098.718ENSCJAG00000021594PRPF38A10098.718Callithrix_jacchus
ENSMUSG00000063800Prpf38a10098.718ENSCAFG00000003740PRPF38A10098.718Canis_familiaris
ENSMUSG00000063800Prpf38a10098.718ENSCAFG00020010939PRPF38A10098.718Canis_lupus_dingo
ENSMUSG00000063800Prpf38a10098.718ENSCHIG00000024730PRPF38A10098.718Capra_hircus
ENSMUSG00000063800Prpf38a8697.398ENSTSYG00000031994-9597.398Carlito_syrichta
ENSMUSG00000063800Prpf38a10098.718ENSTSYG00000009868-10098.718Carlito_syrichta
ENSMUSG00000063800Prpf38a10098.718ENSCPOG00000005079PRPF38A10098.718Cavia_porcellus
ENSMUSG00000063800Prpf38a10098.397ENSCCAG00000026502PRPF38A10098.397Cebus_capucinus
ENSMUSG00000063800Prpf38a10063.782ENSCATG00000044190-10062.500Cercocebus_atys
ENSMUSG00000063800Prpf38a10098.718ENSCATG00000032296PRPF38A10098.718Cercocebus_atys
ENSMUSG00000063800Prpf38a10098.718ENSCLAG00000005816PRPF38A10098.718Chinchilla_lanigera
ENSMUSG00000063800Prpf38a7896.875ENSCHOG00000008388PRPF38A7796.875Choloepus_hoffmanni
ENSMUSG00000063800Prpf38a10097.436ENSCPBG00000014791PRPF38A10097.436Chrysemys_picta_bellii
ENSMUSG00000063800Prpf38a6771.905ENSCSAVG00000009580-7866.102Ciona_savignyi
ENSMUSG00000063800Prpf38a9698.662ENSCANG00000032608PRPF38A10098.662Colobus_angolensis_palliatus
ENSMUSG00000063800Prpf38a10099.038ENSCGRG00001018502-10099.038Cricetulus_griseus_chok1gshd
ENSMUSG00000063800Prpf38a7484.416ENSCGRG00001002557-7884.416Cricetulus_griseus_chok1gshd
ENSMUSG00000063800Prpf38a10099.038ENSCGRG00000014868Prpf38a10099.038Cricetulus_griseus_crigri
ENSMUSG00000063800Prpf38a7187.330ENSCSEG00000001269prpf38a7986.580Cynoglossus_semilaevis
ENSMUSG00000063800Prpf38a7190.045ENSCVAG00000012305prpf38a10082.109Cyprinodon_variegatus
ENSMUSG00000063800Prpf38a10081.470ENSDARG00000039213prpf38a10081.470Danio_rerio
ENSMUSG00000063800Prpf38a10098.718ENSDNOG00000042326PRPF38A10098.718Dasypus_novemcinctus
ENSMUSG00000063800Prpf38a8482.510ENSDORG00000023691-7886.784Dipodomys_ordii
ENSMUSG00000063800Prpf38a10085.256ENSDORG00000023857-10098.958Dipodomys_ordii
ENSMUSG00000063800Prpf38a8482.510ENSDORG00000025371-7886.784Dipodomys_ordii
ENSMUSG00000063800Prpf38a6374.112FBgn0050342Prp385775.000Drosophila_melanogaster
ENSMUSG00000063800Prpf38a7681.092ENSEBUG00000012588prpf38a7581.116Eptatretus_burgeri
ENSMUSG00000063800Prpf38a10098.718ENSEASG00005014427PRPF38A10098.718Equus_asinus_asinus
ENSMUSG00000063800Prpf38a10098.718ENSECAG00000022628PRPF38A10098.718Equus_caballus
ENSMUSG00000063800Prpf38a7186.425ENSELUG00000021094prpf38a10080.192Esox_lucius
ENSMUSG00000063800Prpf38a10098.718ENSFCAG00000002518PRPF38A10098.718Felis_catus
ENSMUSG00000063800Prpf38a8796.310ENSFALG00000005598-10096.310Ficedula_albicollis
ENSMUSG00000063800Prpf38a9984.566ENSFALG00000003612-7789.610Ficedula_albicollis
ENSMUSG00000063800Prpf38a10098.397ENSFDAG00000011287PRPF38A10098.397Fukomys_damarensis
ENSMUSG00000063800Prpf38a8478.409ENSFHEG00000014317prpf38a7888.312Fundulus_heteroclitus
ENSMUSG00000063800Prpf38a5393.976ENSGMOG00000011384prpf38a5493.976Gadus_morhua
ENSMUSG00000063800Prpf38a10097.756ENSGALG00000010627PRPF38A10097.756Gallus_gallus
ENSMUSG00000063800Prpf38a7190.045ENSGAFG00000012422prpf38a10082.109Gambusia_affinis
ENSMUSG00000063800Prpf38a7185.650ENSGACG00000005423prpf38a10079.048Gasterosteus_aculeatus
ENSMUSG00000063800Prpf38a10097.756ENSGAGG00000020547PRPF38A10097.756Gopherus_agassizii
ENSMUSG00000063800Prpf38a10098.718ENSGGOG00000003940PRPF38A10098.718Gorilla_gorilla
ENSMUSG00000063800Prpf38a6190.476ENSHBUG00000020572prpf38a8090.426Haplochromis_burtoni
ENSMUSG00000063800Prpf38a10098.718ENSHGLG00000000475PRPF38A10098.718Heterocephalus_glaber_female
ENSMUSG00000063800Prpf38a10082.692ENSHGLG00000007918-10082.372Heterocephalus_glaber_female
ENSMUSG00000063800Prpf38a10098.718ENSHGLG00100008935PRPF38A10098.718Heterocephalus_glaber_male
ENSMUSG00000063800Prpf38a10082.692ENSHGLG00100003928-10082.372Heterocephalus_glaber_male
ENSMUSG00000063800Prpf38a8769.373ENSHCOG00000020781prpf38a5990.957Hippocampus_comes
ENSMUSG00000063800Prpf38a7487.069ENSIPUG00000005757prpf38a7587.069Ictalurus_punctatus
ENSMUSG00000063800Prpf38a10098.718ENSSTOG00000015610PRPF38A10098.718Ictidomys_tridecemlineatus
ENSMUSG00000063800Prpf38a10098.077ENSJJAG00000015811Prpf38a10098.077Jaculus_jaculus
ENSMUSG00000063800Prpf38a7189.593ENSKMAG00000006588prpf38a10081.789Kryptolebias_marmoratus
ENSMUSG00000063800Prpf38a9678.859ENSLBEG00000020585prpf38a10079.233Labrus_bergylta
ENSMUSG00000063800Prpf38a10091.987ENSLACG00000011495PRPF38A10091.987Latimeria_chalumnae
ENSMUSG00000063800Prpf38a10079.872ENSLOCG00000006262prpf38a10081.150Lepisosteus_oculatus
ENSMUSG00000063800Prpf38a10098.718ENSLAFG00000025862PRPF38A10098.718Loxodonta_africana
ENSMUSG00000063800Prpf38a10098.718ENSMFAG00000039449PRPF38A10098.718Macaca_fascicularis
ENSMUSG00000063800Prpf38a8797.794ENSMMUG00000014333PRPF38A9897.794Macaca_mulatta
ENSMUSG00000063800Prpf38a10098.718ENSMNEG00000031221PRPF38A10098.718Macaca_nemestrina
ENSMUSG00000063800Prpf38a10064.103ENSMNEG00000040242-10063.141Macaca_nemestrina
ENSMUSG00000063800Prpf38a10098.718ENSMLEG00000041105PRPF38A10098.718Mandrillus_leucophaeus
ENSMUSG00000063800Prpf38a7187.783ENSMAMG00000015431prpf38a10081.150Mastacembelus_armatus
ENSMUSG00000063800Prpf38a7185.973ENSMZEG00005017838prpf38a10079.872Maylandia_zebra
ENSMUSG00000063800Prpf38a9697.659ENSMGAG00000011176PRPF38A10097.659Meleagris_gallopavo
ENSMUSG00000063800Prpf38a8593.939ENSMAUG00000018029-8793.939Mesocricetus_auratus
ENSMUSG00000063800Prpf38a10098.718ENSMICG00000014193PRPF38A10098.718Microcebus_murinus
ENSMUSG00000063800Prpf38a10099.038ENSMOCG00000013080Prpf38a10099.038Microtus_ochrogaster
ENSMUSG00000063800Prpf38a8381.395ENSMMOG00000016972prpf38a10074.841Mola_mola
ENSMUSG00000063800Prpf38a10097.125ENSMODG00000000644PRPF38A10097.125Monodelphis_domestica
ENSMUSG00000063800Prpf38a7187.783ENSMALG00000019363prpf38a9781.150Monopterus_albus
ENSMUSG00000063800Prpf38a100100.000MGP_CAROLIEiJ_G0026269Prpf38a100100.000Mus_caroli
ENSMUSG00000063800Prpf38a100100.000MGP_PahariEiJ_G0028602Prpf38a100100.000Mus_pahari
ENSMUSG00000063800Prpf38a10099.679MGP_SPRETEiJ_G0027238Prpf38a100100.000Mus_spretus
ENSMUSG00000063800Prpf38a10098.718ENSMPUG00000006896PRPF38A10098.718Mustela_putorius_furo
ENSMUSG00000063800Prpf38a10099.038ENSNGAG00000011884Prpf38a10099.038Nannospalax_galili
ENSMUSG00000063800Prpf38a7184.615ENSNBRG00000004013prpf38a7483.983Neolamprologus_brichardi
ENSMUSG00000063800Prpf38a9772.517ENSNLEG00000012592-9972.517Nomascus_leucogenys
ENSMUSG00000063800Prpf38a10066.667ENSNLEG00000033398-9466.667Nomascus_leucogenys
ENSMUSG00000063800Prpf38a9398.616ENSNLEG00000017999PRPF38A9398.616Nomascus_leucogenys
ENSMUSG00000063800Prpf38a10094.231ENSMEUG00000003860PRPF38A10094.231Notamacropus_eugenii
ENSMUSG00000063800Prpf38a7798.750ENSOPRG00000008985PRPF38A10098.750Ochotona_princeps
ENSMUSG00000063800Prpf38a10098.718ENSODEG00000005869PRPF38A10098.718Octodon_degus
ENSMUSG00000063800Prpf38a7186.425ENSONIG00000007816prpf38a10080.192Oreochromis_niloticus
ENSMUSG00000063800Prpf38a10064.650ENSOANG00000009541-10064.650Ornithorhynchus_anatinus
ENSMUSG00000063800Prpf38a10098.718ENSOCUG00000000963PRPF38A10098.718Oryctolagus_cuniculus
ENSMUSG00000063800Prpf38a9682.000ENSORLG00000013485prpf38a9982.051Oryzias_latipes
ENSMUSG00000063800Prpf38a9682.000ENSORLG00020002130prpf38a9982.051Oryzias_latipes_hni
ENSMUSG00000063800Prpf38a9681.667ENSORLG00015021393prpf38a9981.731Oryzias_latipes_hsok
ENSMUSG00000063800Prpf38a9681.544ENSOMEG00000016333prpf38a10081.470Oryzias_melastigma
ENSMUSG00000063800Prpf38a10098.718ENSOGAG00000005423PRPF38A10098.718Otolemur_garnettii
ENSMUSG00000063800Prpf38a10098.718ENSOARG00000005373PRPF38A10098.718Ovis_aries
ENSMUSG00000063800Prpf38a10076.923ENSPPAG00000033867-10076.923Pan_paniscus
ENSMUSG00000063800Prpf38a10098.718ENSPPAG00000030905PRPF38A10098.718Pan_paniscus
ENSMUSG00000063800Prpf38a10098.718ENSPPRG00000013268PRPF38A10098.718Panthera_pardus
ENSMUSG00000063800Prpf38a10098.718ENSPTIG00000015419PRPF38A10098.718Panthera_tigris_altaica
ENSMUSG00000063800Prpf38a10098.718ENSPTRG00000000739PRPF38A10098.718Pan_troglodytes
ENSMUSG00000063800Prpf38a10098.718ENSPANG00000015483PRPF38A10098.718Papio_anubis
ENSMUSG00000063800Prpf38a10078.526ENSPKIG00000011439prpf38a10079.808Paramormyrops_kingsleyae
ENSMUSG00000063800Prpf38a10097.115ENSPSIG00000017487PRPF38A10097.115Pelodiscus_sinensis
ENSMUSG00000063800Prpf38a7088.940ENSPMGG00000021352prpf38a9978.317Periophthalmus_magnuspinnatus
ENSMUSG00000063800Prpf38a10092.063ENSPEMG00000011212-10091.429Peromyscus_maniculatus_bairdii
ENSMUSG00000063800Prpf38a10099.038ENSPEMG00000023277-10099.038Peromyscus_maniculatus_bairdii
ENSMUSG00000063800Prpf38a10096.805ENSPCIG00000022369-10096.805Phascolarctos_cinereus
ENSMUSG00000063800Prpf38a8381.081ENSPFOG00000004248prpf38a10082.109Poecilia_formosa
ENSMUSG00000063800Prpf38a9276.712ENSPLAG00000010328prpf38a10082.109Poecilia_latipinna
ENSMUSG00000063800Prpf38a8478.947ENSPMEG00000011804prpf38a10082.109Poecilia_mexicana
ENSMUSG00000063800Prpf38a9573.333ENSPREG00000002835prpf38a5893.617Poecilia_reticulata
ENSMUSG00000063800Prpf38a10090.221ENSPPYG00000001348PRPF38A10090.221Pongo_abelii
ENSMUSG00000063800Prpf38a10098.077ENSPCAG00000013328PRPF38A10098.077Procavia_capensis
ENSMUSG00000063800Prpf38a10098.718ENSPCOG00000016387-10098.718Propithecus_coquereli
ENSMUSG00000063800Prpf38a10075.641ENSPCOG00000020709-7679.654Propithecus_coquereli
ENSMUSG00000063800Prpf38a10098.718ENSPVAG00000009803PRPF38A10098.718Pteropus_vampyrus
ENSMUSG00000063800Prpf38a7185.973ENSPNYG00000005571prpf38a10079.872Pundamilia_nyererei
ENSMUSG00000063800Prpf38a10082.109ENSPNAG00000010399prpf38a10082.109Pygocentrus_nattereri
ENSMUSG00000063800Prpf38a10099.359ENSRNOG00000009451Prpf38a10099.359Rattus_norvegicus
ENSMUSG00000063800Prpf38a10062.179ENSRBIG00000034053-10077.622Rhinopithecus_bieti
ENSMUSG00000063800Prpf38a10098.718ENSRBIG00000036442PRPF38A10098.718Rhinopithecus_bieti
ENSMUSG00000063800Prpf38a9877.778ENSRROG00000040003-9977.778Rhinopithecus_roxellana
ENSMUSG00000063800Prpf38a10098.718ENSRROG00000032788PRPF38A10098.718Rhinopithecus_roxellana
ENSMUSG00000063800Prpf38a10098.718ENSSBOG00000019515PRPF38A10098.718Saimiri_boliviensis_boliviensis
ENSMUSG00000063800Prpf38a9670.066ENSSHAG00000006029-7480.543Sarcophilus_harrisii
ENSMUSG00000063800Prpf38a8796.310ENSSHAG00000006906-10096.310Sarcophilus_harrisii
ENSMUSG00000063800Prpf38a10080.192ENSSFOG00015013572prpf38a10079.233Scleropages_formosus
ENSMUSG00000063800Prpf38a7187.330ENSSMAG00000015379prpf38a7586.580Scophthalmus_maximus
ENSMUSG00000063800Prpf38a7188.688ENSSDUG00000001324prpf38a10081.789Seriola_dumerili
ENSMUSG00000063800Prpf38a7188.688ENSSLDG00000014803prpf38a10081.789Seriola_lalandi_dorsalis
ENSMUSG00000063800Prpf38a10081.731ENSSARG00000014458PRPF38A10081.731Sorex_araneus
ENSMUSG00000063800Prpf38a10094.872ENSSPUG00000013259PRPF38A10094.872Sphenodon_punctatus
ENSMUSG00000063800Prpf38a7170.136ENSSPAG00000010449prpf38a7270.130Stegastes_partitus
ENSMUSG00000063800Prpf38a10098.718ENSSSCG00000028288PRPF38A10098.718Sus_scrofa
ENSMUSG00000063800Prpf38a10093.269ENSTGUG00000008995PRPF38A10093.269Taeniopygia_guttata
ENSMUSG00000063800Prpf38a7187.783ENSTRUG00000003374prpf38a7187.013Takifugu_rubripes
ENSMUSG00000063800Prpf38a7186.099ENSTNIG00000005533prpf38a10079.683Tetraodon_nigroviridis
ENSMUSG00000063800Prpf38a10098.077ENSTBEG00000000725PRPF38A10098.077Tupaia_belangeri
ENSMUSG00000063800Prpf38a10098.718ENSTTRG00000016139PRPF38A10098.718Tursiops_truncatus
ENSMUSG00000063800Prpf38a10098.718ENSUAMG00000000625PRPF38A10098.718Ursus_americanus
ENSMUSG00000063800Prpf38a10098.718ENSUMAG00000022674PRPF38A10098.718Ursus_maritimus
ENSMUSG00000063800Prpf38a7497.835ENSVPAG00000000907PRPF38A10092.949Vicugna_pacos
ENSMUSG00000063800Prpf38a10098.718ENSVVUG00000004475PRPF38A10098.718Vulpes_vulpes
ENSMUSG00000063800Prpf38a10084.026ENSXETG00000008060prpf38a10087.859Xenopus_tropicalis
ENSMUSG00000063800Prpf38a7187.892ENSXCOG00000007393prpf38a7787.124Xiphophorus_couchianus
ENSMUSG00000063800Prpf38a7190.045ENSXMAG00000026143prpf38a10082.109Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0031965nuclear membrane-ISOComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071011precatalytic spliceosome21873635.IBAComponent
GO:0071011precatalytic spliceosome-ISOComponent

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