EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000063884 (Gene tree)
Gene ID: 69956
Gene Symbol: Ptcd3
Alias: 2610034F17Rik|2810422B04Rik
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 28113
Position: chr6: 71880638-71908750
Accession: 1917206
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000205293	-	853	-	-	- (aa)	-	-
ENSMUST00000206879	-	2666	XM_011241461	ENSMUSP00000146260	284 (aa)	XP_011239763	A0A0U1RQ61
ENSMUST00000205556	-	588	-	ENSMUSP00000145813	51 (aa)	-	A0A0U1RP36
ENSMUST00000205269	-	1161	-	-	- (aa)	-	-
ENSMUST00000205420	-	320	-	-	- (aa)	-	-
ENSMUST00000205691	-	2364	-	-	- (aa)	-	-
ENSMUST00000082094	-	2581	XM_006506573	ENSMUSP00000080743	685 (aa)	XP_006506637	Q14C51
ENSMUST00000206762	-	521	-	-	- (aa)	-	-
ENSMUST00000206284	-	545	-	ENSMUSP00000145566	59 (aa)	-	A0A0U1RNH5
ENSMUST00000205761	-	2680	-	-	- (aa)	-	-
ENSMUST00000206631	-	949	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000063884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000063884's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000063884	Ptcd3	91	50.553	ENSDARG00000103856	ptcd3	93	50.801	Danio_rerio
ENSMUSG00000063884	Ptcd3	91	31.024	FBgn0033816	CG4679	93	31.360	Drosophila_melanogaster
ENSMUSG00000063884	Ptcd3	97	73.997	ENSG00000132300	PTCD3	96	74.063	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005840	ribosome	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0019843	rRNA binding	-	ISO	Function
GO:0032543	mitochondrial translation	-	ISO	Process
GO:0043024	ribosomal small subunit binding	-	ISO	Function