EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000064030 (Gene tree)
Gene ID: 78428
Gene Symbol: Pym1
Alias: A030010B05Rik|PYM Protein|Pym|Wibg
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 18676 bases
Position: chr10:128747889-128766564
Accession: 1925678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000067623	Mago-bind	PF09282.10	1.6e-13	1	1
ENSMUSP00000129789	Mago-bind	PF09282.10	3.8e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000218218	-	1143	XM_006514322	ENSMUSP00000151691	62 (aa)	XP_006514385	A0A1W2P7L0
ENSMUST00000163377	-	1158	-	ENSMUSP00000129789	203 (aa)	-	Q8CHP5
ENSMUST00000065210	-	1156	-	ENSMUSP00000067623	202 (aa)	-	Q8CHP5

Gene Model

Click here to download ENSMUSG00000064030's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000064030's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000064030	Pym1	94	91.623	ENSG00000170473	PYM1	94	91.623	Homo_sapiens
ENSMUSG00000064030	Pym1	99	57.277	ENSAPOG00000023045	pym1	93	58.209	Acanthochromis_polyacanthus
ENSMUSG00000064030	Pym1	93	86.170	ENSAMEG00000003091	PYM1	93	86.170	Ailuropoda_melanoleuca
ENSMUSG00000064030	Pym1	99	56.279	ENSACIG00000012769	pym1	94	57.895	Amphilophus_citrinellus
ENSMUSG00000064030	Pym1	99	56.872	ENSAOCG00000021358	pym1	94	58.128	Amphiprion_ocellaris
ENSMUSG00000064030	Pym1	99	56.872	ENSAPEG00000022679	pym1	94	58.128	Amphiprion_percula
ENSMUSG00000064030	Pym1	99	56.542	ENSATEG00000024022	pym1	93	59.000	Anabas_testudineus
ENSMUSG00000064030	Pym1	94	66.010	ENSACAG00000005714	PYM1	94	66.502	Anolis_carolinensis
ENSMUSG00000064030	Pym1	94	90.576	ENSANAG00000036967	PYM1	94	90.576	Aotus_nancymaae
ENSMUSG00000064030	Pym1	100	55.046	ENSAMXG00000007650	pym1	92	59.113	Astyanax_mexicanus
ENSMUSG00000064030	Pym1	94	89.005	ENSBTAG00000031146	PYM1	94	89.005	Bos_taurus
ENSMUSG00000064030	Pym1	94	90.576	ENSCJAG00000041077	PYM1	94	90.576	Callithrix_jacchus
ENSMUSG00000064030	Pym1	94	91.099	ENSCAFG00000000076	PYM1	94	91.099	Canis_familiaris
ENSMUSG00000064030	Pym1	94	91.099	ENSCAFG00020026099	PYM1	94	91.099	Canis_lupus_dingo
ENSMUSG00000064030	Pym1	94	87.958	ENSCHIG00000026207	PYM1	94	87.958	Capra_hircus
ENSMUSG00000064030	Pym1	94	89.005	ENSTSYG00000000787	PYM1	94	89.005	Carlito_syrichta
ENSMUSG00000064030	Pym1	88	89.944	ENSCAPG00000010374	PYM1	94	89.944	Cavia_aperea
ENSMUSG00000064030	Pym1	94	90.576	ENSCPOG00000031546	PYM1	94	90.576	Cavia_porcellus
ENSMUSG00000064030	Pym1	94	91.099	ENSCCAG00000026187	PYM1	94	91.099	Cebus_capucinus
ENSMUSG00000064030	Pym1	94	91.099	ENSCATG00000018801	PYM1	94	91.099	Cercocebus_atys
ENSMUSG00000064030	Pym1	94	85.864	ENSCLAG00000007964	PYM1	94	85.864	Chinchilla_lanigera
ENSMUSG00000064030	Pym1	89	90.556	ENSCSAG00000005291	PYM1	93	90.055	Chlorocebus_sabaeus
ENSMUSG00000064030	Pym1	98	40.476	ENSCING00000006448	-	94	40.500	Ciona_intestinalis
ENSMUSG00000064030	Pym1	98	38.942	ENSCSAVG00000009805	-	89	38.889	Ciona_savignyi
ENSMUSG00000064030	Pym1	94	91.099	ENSCANG00000020338	-	94	91.099	Colobus_angolensis_palliatus
ENSMUSG00000064030	Pym1	98	84.264	ENSCANG00000019757	-	87	86.316	Colobus_angolensis_palliatus
ENSMUSG00000064030	Pym1	94	78.421	ENSCGRG00001004231	-	93	80.628	Cricetulus_griseus_chok1gshd
ENSMUSG00000064030	Pym1	94	94.737	ENSCGRG00001018051	-	94	94.737	Cricetulus_griseus_chok1gshd
ENSMUSG00000064030	Pym1	94	94.737	ENSCGRG00000012495	-	94	94.737	Cricetulus_griseus_crigri
ENSMUSG00000064030	Pym1	94	78.421	ENSCGRG00000018933	-	93	80.628	Cricetulus_griseus_crigri
ENSMUSG00000064030	Pym1	94	56.000	ENSCSEG00000021531	pym1	93	56.853	Cynoglossus_semilaevis
ENSMUSG00000064030	Pym1	94	57.214	ENSCVAG00000017360	pym1	79	58.511	Cyprinodon_variegatus
ENSMUSG00000064030	Pym1	99	58.291	ENSDARG00000046024	pym1	92	56.373	Danio_rerio
ENSMUSG00000064030	Pym1	94	87.435	ENSDNOG00000048414	PYM1	86	87.435	Dasypus_novemcinctus
ENSMUSG00000064030	Pym1	94	91.099	ENSDORG00000029448	Pym1	94	91.099	Dipodomys_ordii
ENSMUSG00000064030	Pym1	97	33.182	FBgn0034918	Pym	92	33.816	Drosophila_melanogaster
ENSMUSG00000064030	Pym1	89	83.799	ENSETEG00000004461	-	94	83.799	Echinops_telfairi
ENSMUSG00000064030	Pym1	93	86.170	ENSEASG00005002271	PYM1	85	86.170	Equus_asinus_asinus
ENSMUSG00000064030	Pym1	94	90.576	ENSECAG00000011870	PYM1	94	90.576	Equus_caballus
ENSMUSG00000064030	Pym1	96	57.789	ENSELUG00000024250	pym1	94	58.163	Esox_lucius
ENSMUSG00000064030	Pym1	94	90.052	ENSFCAG00000013967	PYM1	94	90.052	Felis_catus
ENSMUSG00000064030	Pym1	94	90.052	ENSFDAG00000006314	PYM1	94	90.052	Fukomys_damarensis
ENSMUSG00000064030	Pym1	93	56.281	ENSFHEG00000005884	pym1	93	56.281	Fundulus_heteroclitus
ENSMUSG00000064030	Pym1	94	57.360	ENSGMOG00000007239	pym1	93	57.360	Gadus_morhua
ENSMUSG00000064030	Pym1	94	70.256	ENSGALG00000046169	PYM1	94	70.558	Gallus_gallus
ENSMUSG00000064030	Pym1	99	57.746	ENSGAFG00000003280	pym1	93	57.711	Gambusia_affinis
ENSMUSG00000064030	Pym1	100	52.683	ENSGACG00000010703	pym1	92	55.208	Gasterosteus_aculeatus
ENSMUSG00000064030	Pym1	92	63.235	ENSGAGG00000001973	PYM1	88	63.235	Gopherus_agassizii
ENSMUSG00000064030	Pym1	94	91.099	ENSGGOG00000043246	PYM1	94	91.099	Gorilla_gorilla
ENSMUSG00000064030	Pym1	93	57.000	ENSHBUG00000012719	pym1	94	57.635	Haplochromis_burtoni
ENSMUSG00000064030	Pym1	94	90.576	ENSHGLG00000017155	PYM1	94	90.576	Heterocephalus_glaber_female
ENSMUSG00000064030	Pym1	94	90.576	ENSHGLG00100015341	PYM1	94	90.576	Heterocephalus_glaber_male
ENSMUSG00000064030	Pym1	99	59.615	ENSHCOG00000007987	pym1	80	60.204	Hippocampus_comes
ENSMUSG00000064030	Pym1	100	57.143	ENSIPUG00000005975	wibga	93	57.921	Ictalurus_punctatus
ENSMUSG00000064030	Pym1	94	92.147	ENSSTOG00000014206	PYM1	94	92.147	Ictidomys_tridecemlineatus
ENSMUSG00000064030	Pym1	94	90.052	ENSJJAG00000013338	Pym1	94	90.052	Jaculus_jaculus
ENSMUSG00000064030	Pym1	99	55.157	ENSKMAG00000006351	pym1	93	55.450	Kryptolebias_marmoratus
ENSMUSG00000064030	Pym1	99	56.250	ENSLBEG00000015707	pym1	93	56.633	Labrus_bergylta
ENSMUSG00000064030	Pym1	93	56.219	ENSLACG00000014398	PYM1	93	56.219	Latimeria_chalumnae
ENSMUSG00000064030	Pym1	94	89.005	ENSLAFG00000002369	PYM1	94	89.005	Loxodonta_africana
ENSMUSG00000064030	Pym1	94	91.099	ENSMFAG00000003048	PYM1	94	91.099	Macaca_fascicularis
ENSMUSG00000064030	Pym1	94	91.099	ENSMMUG00000011002	PYM1	94	91.099	Macaca_mulatta
ENSMUSG00000064030	Pym1	94	91.099	ENSMNEG00000034677	PYM1	94	91.099	Macaca_nemestrina
ENSMUSG00000064030	Pym1	94	91.099	ENSMLEG00000007971	PYM1	94	91.099	Mandrillus_leucophaeus
ENSMUSG00000064030	Pym1	99	56.621	ENSMAMG00000001588	pym1	93	57.971	Mastacembelus_armatus
ENSMUSG00000064030	Pym1	93	56.500	ENSMZEG00005026458	pym1	94	57.143	Maylandia_zebra
ENSMUSG00000064030	Pym1	94	93.684	ENSMAUG00000007318	Pym1	94	93.684	Mesocricetus_auratus
ENSMUSG00000064030	Pym1	94	89.529	ENSMICG00000032962	PYM1	94	89.529	Microcebus_murinus
ENSMUSG00000064030	Pym1	94	92.105	ENSMOCG00000010208	Pym1	94	92.105	Microtus_ochrogaster
ENSMUSG00000064030	Pym1	99	58.049	ENSMMOG00000009301	pym1	94	57.868	Mola_mola
ENSMUSG00000064030	Pym1	99	55.714	ENSMALG00000013496	pym1	93	56.716	Monopterus_albus
ENSMUSG00000064030	Pym1	100	98.030	MGP_CAROLIEiJ_G0015953	Pym1	100	98.030	Mus_caroli
ENSMUSG00000064030	Pym1	100	96.040	MGP_PahariEiJ_G0031131	Pym1	100	96.040	Mus_pahari
ENSMUSG00000064030	Pym1	100	99.507	MGP_SPRETEiJ_G0016778	Pym1	100	99.507	Mus_spretus
ENSMUSG00000064030	Pym1	94	90.576	ENSMPUG00000000931	PYM1	94	90.576	Mustela_putorius_furo
ENSMUSG00000064030	Pym1	94	83.246	ENSMLUG00000003586	PYM1	90	87.293	Myotis_lucifugus
ENSMUSG00000064030	Pym1	89	91.111	ENSNGAG00000019207	Pym1	87	91.111	Nannospalax_galili
ENSMUSG00000064030	Pym1	99	57.075	ENSNBRG00000006951	pym1	93	58.500	Neolamprologus_brichardi
ENSMUSG00000064030	Pym1	94	91.623	ENSNLEG00000017588	PYM1	94	91.623	Nomascus_leucogenys
ENSMUSG00000064030	Pym1	88	78.090	ENSMEUG00000001017	PYM1	93	77.966	Notamacropus_eugenii
ENSMUSG00000064030	Pym1	94	84.896	ENSOPRG00000007797	PYM1	94	84.896	Ochotona_princeps
ENSMUSG00000064030	Pym1	94	90.576	ENSODEG00000004289	PYM1	94	90.576	Octodon_degus
ENSMUSG00000064030	Pym1	93	56.158	ENSONIG00000016740	pym1	93	57.635	Oreochromis_niloticus
ENSMUSG00000064030	Pym1	89	88.889	ENSOCUG00000025969	PYM1	81	88.889	Oryctolagus_cuniculus
ENSMUSG00000064030	Pym1	99	59.809	ENSORLG00000030592	pym1	93	60.204	Oryzias_latipes
ENSMUSG00000064030	Pym1	99	59.242	ENSORLG00020011264	pym1	93	60.101	Oryzias_latipes_hni
ENSMUSG00000064030	Pym1	99	60.577	ENSORLG00015005287	pym1	93	61.026	Oryzias_latipes_hsok
ENSMUSG00000064030	Pym1	99	60.680	ENSOMEG00000022250	pym1	93	60.825	Oryzias_melastigma
ENSMUSG00000064030	Pym1	89	90.000	ENSOGAG00000007038	PYM1	90	88.043	Otolemur_garnettii
ENSMUSG00000064030	Pym1	94	88.482	ENSOARG00000010856	PYM1	94	88.482	Ovis_aries
ENSMUSG00000064030	Pym1	94	91.623	ENSPPAG00000043630	PYM1	94	91.623	Pan_paniscus
ENSMUSG00000064030	Pym1	94	89.005	ENSPPRG00000013243	PYM1	94	89.005	Panthera_pardus
ENSMUSG00000064030	Pym1	94	89.005	ENSPTIG00000017380	PYM1	94	89.005	Panthera_tigris_altaica
ENSMUSG00000064030	Pym1	94	91.623	ENSPTRG00000005067	PYM1	94	91.623	Pan_troglodytes
ENSMUSG00000064030	Pym1	94	90.576	ENSPANG00000009562	PYM1	94	90.576	Papio_anubis
ENSMUSG00000064030	Pym1	100	61.502	ENSPKIG00000006301	pym1	93	61.616	Paramormyrops_kingsleyae
ENSMUSG00000064030	Pym1	94	61.692	ENSPSIG00000003043	PYM1	94	61.692	Pelodiscus_sinensis
ENSMUSG00000064030	Pym1	100	58.852	ENSPMGG00000023161	pym1	92	59.794	Periophthalmus_magnuspinnatus
ENSMUSG00000064030	Pym1	94	92.105	ENSPEMG00000009372	Pym1	94	92.105	Peromyscus_maniculatus_bairdii
ENSMUSG00000064030	Pym1	92	76.344	ENSPCIG00000024658	PYM1	90	76.344	Phascolarctos_cinereus
ENSMUSG00000064030	Pym1	99	59.624	ENSPFOG00000008193	pym1	93	59.701	Poecilia_formosa
ENSMUSG00000064030	Pym1	99	59.624	ENSPLAG00000009228	pym1	93	59.701	Poecilia_latipinna
ENSMUSG00000064030	Pym1	99	59.624	ENSPMEG00000001505	pym1	93	59.701	Poecilia_mexicana
ENSMUSG00000064030	Pym1	94	88.542	ENSPPYG00000004635	PYM1	93	90.055	Pongo_abelii
ENSMUSG00000064030	Pym1	94	90.052	ENSPCOG00000019706	PYM1	94	90.052	Propithecus_coquereli
ENSMUSG00000064030	Pym1	94	88.542	ENSPVAG00000011437	PYM1	92	90.556	Pteropus_vampyrus
ENSMUSG00000064030	Pym1	93	57.286	ENSPNYG00000012871	pym1	94	57.921	Pundamilia_nyererei
ENSMUSG00000064030	Pym1	99	58.257	ENSPNAG00000018833	pym1	93	59.709	Pygocentrus_nattereri
ENSMUSG00000064030	Pym1	94	70.681	ENSRNOG00000049415	AABR07055413.1	94	70.681	Rattus_norvegicus
ENSMUSG00000064030	Pym1	94	92.147	ENSRNOG00000058130	Pym1	94	92.147	Rattus_norvegicus
ENSMUSG00000064030	Pym1	94	86.387	ENSRBIG00000033362	PYM1	94	86.387	Rhinopithecus_bieti
ENSMUSG00000064030	Pym1	94	91.099	ENSRROG00000043620	PYM1	94	91.099	Rhinopithecus_roxellana
ENSMUSG00000064030	Pym1	94	91.099	ENSSBOG00000029393	PYM1	94	91.099	Saimiri_boliviensis_boliviensis
ENSMUSG00000064030	Pym1	93	79.365	ENSSHAG00000008280	PYM1	93	79.365	Sarcophilus_harrisii
ENSMUSG00000064030	Pym1	93	63.021	ENSSFOG00015021475	pym1	92	63.021	Scleropages_formosus
ENSMUSG00000064030	Pym1	99	58.294	ENSSMAG00000020912	pym1	93	59.296	Scophthalmus_maximus
ENSMUSG00000064030	Pym1	99	54.884	ENSSDUG00000001807	pym1	94	56.039	Seriola_dumerili
ENSMUSG00000064030	Pym1	99	58.537	ENSSLDG00000013730	pym1	94	59.391	Seriola_lalandi_dorsalis
ENSMUSG00000064030	Pym1	89	88.333	ENSSARG00000009569	PYM1	94	88.333	Sorex_araneus
ENSMUSG00000064030	Pym1	92	61.307	ENSSPUG00000015059	PYM1	94	61.307	Sphenodon_punctatus
ENSMUSG00000064030	Pym1	99	56.542	ENSSPAG00000020100	pym1	93	58.128	Stegastes_partitus
ENSMUSG00000064030	Pym1	94	89.529	ENSSSCG00000040825	PYM1	94	89.529	Sus_scrofa
ENSMUSG00000064030	Pym1	99	54.808	ENSTRUG00000021367	pym1	93	55.612	Takifugu_rubripes
ENSMUSG00000064030	Pym1	99	55.825	ENSTNIG00000012534	pym1	92	57.812	Tetraodon_nigroviridis
ENSMUSG00000064030	Pym1	89	84.444	ENSTBEG00000004208	PYM1	94	84.444	Tupaia_belangeri
ENSMUSG00000064030	Pym1	94	87.500	ENSTTRG00000014971	PYM1	94	88.043	Tursiops_truncatus
ENSMUSG00000064030	Pym1	94	90.576	ENSUAMG00000014521	PYM1	94	90.576	Ursus_americanus
ENSMUSG00000064030	Pym1	94	88.542	ENSUMAG00000016241	PYM1	84	88.649	Ursus_maritimus
ENSMUSG00000064030	Pym1	94	90.576	ENSVVUG00000022749	PYM1	94	90.576	Vulpes_vulpes
ENSMUSG00000064030	Pym1	94	62.564	ENSXETG00000021850	pym1	94	62.564	Xenopus_tropicalis
ENSMUSG00000064030	Pym1	99	57.820	ENSXMAG00000011649	pym1	93	57.789	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0030054	cell junction	-	ISO	Component
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0043022	ribosome binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process
GO:1903259	exon-exon junction complex disassembly	21873635.	IBA	Process
GO:1903259	exon-exon junction complex disassembly	-	ISO	Process