EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000066148 (Gene tree)
Gene ID: 70052
Gene Symbol: Prpf4
Alias: 1600015H11Rik
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 18194 bases
Position: chr4:62408797-62426990
Accession: 1917302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000081572	PRP4	PF08799.11	1.1e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000084524	-	5223	-	ENSMUSP00000081572	521 (aa)	-	Q9DAW6
ENSMUST00000148774	-	912	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000066148's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000066148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000066148	Prpf4	56	33.673	ENSMUSG00000040688	Tbl3	66	33.673
ENSMUSG00000066148	Prpf4	65	30.275	ENSMUSG00000041747	Utp15	54	30.275
ENSMUSG00000066148	Prpf4	56	32.456	ENSMUSG00000023345	Poc1a	87	31.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000066148	Prpf4	100	99.040	ENSG00000136875	PRPF4	100	99.040	Homo_sapiens
ENSMUSG00000066148	Prpf4	96	77.615	ENSAPOG00000014132	prpf4	98	77.615	Acanthochromis_polyacanthus
ENSMUSG00000066148	Prpf4	100	99.232	ENSAMEG00000013048	PRPF4	98	99.232	Ailuropoda_melanoleuca
ENSMUSG00000066148	Prpf4	96	76.984	ENSACIG00000005579	prpf4	99	76.984	Amphilophus_citrinellus
ENSMUSG00000066148	Prpf4	96	77.030	ENSAOCG00000005457	prpf4	99	77.030	Amphiprion_ocellaris
ENSMUSG00000066148	Prpf4	96	76.832	ENSAPEG00000000776	prpf4	99	76.832	Amphiprion_percula
ENSMUSG00000066148	Prpf4	96	76.786	ENSATEG00000023013	prpf4	99	76.786	Anabas_testudineus
ENSMUSG00000066148	Prpf4	100	88.676	ENSAPLG00000006534	PRPF4	97	88.676	Anas_platyrhynchos
ENSMUSG00000066148	Prpf4	100	89.675	ENSACAG00000015110	PRPF4	100	89.675	Anolis_carolinensis
ENSMUSG00000066148	Prpf4	100	99.424	ENSANAG00000022464	PRPF4	96	99.424	Aotus_nancymaae
ENSMUSG00000066148	Prpf4	96	76.786	ENSACLG00000019031	prpf4	99	76.786	Astatotilapia_calliptera
ENSMUSG00000066148	Prpf4	97	62.380	ENSAMXG00000006756	prpf4	99	73.663	Astyanax_mexicanus
ENSMUSG00000066148	Prpf4	100	98.464	ENSBTAG00000004571	PRPF4	100	98.464	Bos_taurus
ENSMUSG00000066148	Prpf4	90	44.093	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
ENSMUSG00000066148	Prpf4	100	99.234	ENSCJAG00000017856	PRPF4	100	99.234	Callithrix_jacchus
ENSMUSG00000066148	Prpf4	100	99.232	ENSCAFG00000003224	PRPF4	97	99.232	Canis_familiaris
ENSMUSG00000066148	Prpf4	100	99.232	ENSCAFG00020022637	PRPF4	100	99.232	Canis_lupus_dingo
ENSMUSG00000066148	Prpf4	100	98.659	ENSCHIG00000024648	-	100	98.659	Capra_hircus
ENSMUSG00000066148	Prpf4	100	99.040	ENSTSYG00000010366	PRPF4	100	99.040	Carlito_syrichta
ENSMUSG00000066148	Prpf4	88	88.305	ENSCAPG00000008935	PRPF4	97	88.305	Cavia_aperea
ENSMUSG00000066148	Prpf4	100	98.656	ENSCPOG00000010747	-	100	98.656	Cavia_porcellus
ENSMUSG00000066148	Prpf4	100	92.131	ENSCPOG00000014729	-	100	92.131	Cavia_porcellus
ENSMUSG00000066148	Prpf4	100	99.232	ENSCCAG00000028990	PRPF4	100	99.232	Cebus_capucinus
ENSMUSG00000066148	Prpf4	100	99.040	ENSCATG00000021552	PRPF4	100	99.040	Cercocebus_atys
ENSMUSG00000066148	Prpf4	100	98.848	ENSCLAG00000013448	PRPF4	100	98.848	Chinchilla_lanigera
ENSMUSG00000066148	Prpf4	87	95.354	ENSCHOG00000007233	PRPF4	100	95.354	Choloepus_hoffmanni
ENSMUSG00000066148	Prpf4	99	90.874	ENSCPBG00000019136	PRPF4	74	90.874	Chrysemys_picta_bellii
ENSMUSG00000066148	Prpf4	96	59.055	ENSCING00000001299	-	97	58.416	Ciona_intestinalis
ENSMUSG00000066148	Prpf4	96	57.341	ENSCSAVG00000009178	-	100	58.658	Ciona_savignyi
ENSMUSG00000066148	Prpf4	100	99.232	ENSCANG00000003246	PRPF4	100	99.232	Colobus_angolensis_palliatus
ENSMUSG00000066148	Prpf4	100	99.808	ENSCGRG00001016992	Prpf4	100	99.808	Cricetulus_griseus_chok1gshd
ENSMUSG00000066148	Prpf4	100	99.808	ENSCGRG00000017560	Prpf4	100	99.808	Cricetulus_griseus_crigri
ENSMUSG00000066148	Prpf4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
ENSMUSG00000066148	Prpf4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
ENSMUSG00000066148	Prpf4	100	98.659	ENSDNOG00000013203	PRPF4	100	98.659	Dasypus_novemcinctus
ENSMUSG00000066148	Prpf4	100	99.040	ENSDORG00000026275	Prpf4	100	99.040	Dipodomys_ordii
ENSMUSG00000066148	Prpf4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSMUSG00000066148	Prpf4	100	96.941	ENSETEG00000020389	PRPF4	100	96.941	Echinops_telfairi
ENSMUSG00000066148	Prpf4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSMUSG00000066148	Prpf4	100	99.424	ENSEASG00005022678	PRPF4	100	99.424	Equus_asinus_asinus
ENSMUSG00000066148	Prpf4	100	99.562	ENSECAG00000007072	PRPF4	100	99.424	Equus_caballus
ENSMUSG00000066148	Prpf4	100	78.166	ENSEEUG00000007480	PRPF4	100	78.166	Erinaceus_europaeus
ENSMUSG00000066148	Prpf4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
ENSMUSG00000066148	Prpf4	100	99.234	ENSFCAG00000005514	PRPF4	100	99.234	Felis_catus
ENSMUSG00000066148	Prpf4	98	88.117	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
ENSMUSG00000066148	Prpf4	100	98.656	ENSFDAG00000005839	PRPF4	100	98.656	Fukomys_damarensis
ENSMUSG00000066148	Prpf4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSMUSG00000066148	Prpf4	98	89.824	ENSGALG00000008857	PRPF4	96	89.147	Gallus_gallus
ENSMUSG00000066148	Prpf4	65	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
ENSMUSG00000066148	Prpf4	96	69.841	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
ENSMUSG00000066148	Prpf4	99	91.068	ENSGAGG00000025029	PRPF4	95	91.068	Gopherus_agassizii
ENSMUSG00000066148	Prpf4	100	99.040	ENSGGOG00000006943	PRPF4	100	99.040	Gorilla_gorilla
ENSMUSG00000066148	Prpf4	96	76.587	ENSHBUG00000000562	prpf4	99	76.587	Haplochromis_burtoni
ENSMUSG00000066148	Prpf4	100	80.038	ENSHGLG00000003838	-	100	80.038	Heterocephalus_glaber_female
ENSMUSG00000066148	Prpf4	100	81.453	ENSHGLG00000016628	-	100	82.218	Heterocephalus_glaber_female
ENSMUSG00000066148	Prpf4	100	98.656	ENSHGLG00000015191	PRPF4	100	98.656	Heterocephalus_glaber_female
ENSMUSG00000066148	Prpf4	100	80.038	ENSHGLG00100005571	-	100	80.038	Heterocephalus_glaber_male
ENSMUSG00000066148	Prpf4	97	79.010	ENSIPUG00000017956	PRPF4	99	79.010	Ictalurus_punctatus
ENSMUSG00000066148	Prpf4	100	98.848	ENSSTOG00000027833	PRPF4	100	98.848	Ictidomys_tridecemlineatus
ENSMUSG00000066148	Prpf4	100	99.040	ENSJJAG00000008838	Prpf4	100	99.040	Jaculus_jaculus
ENSMUSG00000066148	Prpf4	96	76.389	ENSKMAG00000013236	prpf4	99	76.389	Kryptolebias_marmoratus
ENSMUSG00000066148	Prpf4	96	75.697	ENSLBEG00000020611	prpf4	99	75.697	Labrus_bergylta
ENSMUSG00000066148	Prpf4	99	80.539	ENSLACG00000016317	PRPF4	99	80.539	Latimeria_chalumnae
ENSMUSG00000066148	Prpf4	97	81.980	ENSLOCG00000000581	prpf4	99	81.980	Lepisosteus_oculatus
ENSMUSG00000066148	Prpf4	100	98.659	ENSLAFG00000018225	PRPF4	100	98.659	Loxodonta_africana
ENSMUSG00000066148	Prpf4	100	98.848	ENSMFAG00000039397	PRPF4	100	98.848	Macaca_fascicularis
ENSMUSG00000066148	Prpf4	100	99.040	ENSMMUG00000005844	PRPF4	100	99.040	Macaca_mulatta
ENSMUSG00000066148	Prpf4	100	88.676	ENSMNEG00000033737	PRPF4	100	88.676	Macaca_nemestrina
ENSMUSG00000066148	Prpf4	100	99.040	ENSMLEG00000040284	PRPF4	100	99.040	Mandrillus_leucophaeus
ENSMUSG00000066148	Prpf4	97	75.937	ENSMAMG00000020141	prpf4	99	75.937	Mastacembelus_armatus
ENSMUSG00000066148	Prpf4	96	76.786	ENSMZEG00005023205	prpf4	99	76.786	Maylandia_zebra
ENSMUSG00000066148	Prpf4	99	88.077	ENSMGAG00000001796	PRPF4	97	88.077	Meleagris_gallopavo
ENSMUSG00000066148	Prpf4	100	99.232	ENSMAUG00000018022	Prpf4	100	99.232	Mesocricetus_auratus
ENSMUSG00000066148	Prpf4	100	98.273	ENSMICG00000015022	PRPF4	100	98.084	Microcebus_murinus
ENSMUSG00000066148	Prpf4	100	99.232	ENSMOCG00000018273	Prpf4	100	99.232	Microtus_ochrogaster
ENSMUSG00000066148	Prpf4	97	75.050	ENSMMOG00000021177	prpf4	99	75.050	Mola_mola
ENSMUSG00000066148	Prpf4	100	94.455	ENSMODG00000004444	-	100	94.455	Monodelphis_domestica
ENSMUSG00000066148	Prpf4	100	95.029	ENSMODG00000025096	-	97	95.029	Monodelphis_domestica
ENSMUSG00000066148	Prpf4	96	76.389	ENSMALG00000013624	prpf4	99	76.389	Monopterus_albus
ENSMUSG00000066148	Prpf4	100	100.000	MGP_CAROLIEiJ_G0026078	Prpf4	100	100.000	Mus_caroli
ENSMUSG00000066148	Prpf4	100	99.808	MGP_PahariEiJ_G0028413	Prpf4	100	99.808	Mus_pahari
ENSMUSG00000066148	Prpf4	100	100.000	MGP_SPRETEiJ_G0027042	Prpf4	100	100.000	Mus_spretus
ENSMUSG00000066148	Prpf4	100	99.232	ENSMPUG00000007883	PRPF4	100	99.232	Mustela_putorius_furo
ENSMUSG00000066148	Prpf4	100	96.929	ENSMLUG00000008626	-	97	96.929	Myotis_lucifugus
ENSMUSG00000066148	Prpf4	100	98.848	ENSMLUG00000015309	-	97	98.848	Myotis_lucifugus
ENSMUSG00000066148	Prpf4	100	93.666	ENSNGAG00000000468	Prpf4	100	93.666	Nannospalax_galili
ENSMUSG00000066148	Prpf4	96	76.984	ENSNBRG00000007972	prpf4	99	76.984	Neolamprologus_brichardi
ENSMUSG00000066148	Prpf4	100	99.424	ENSNLEG00000016647	PRPF4	100	99.424	Nomascus_leucogenys
ENSMUSG00000066148	Prpf4	99	95.136	ENSMEUG00000013256	PRPF4	100	95.136	Notamacropus_eugenii
ENSMUSG00000066148	Prpf4	100	98.467	ENSOPRG00000005302	PRPF4	100	98.467	Ochotona_princeps
ENSMUSG00000066148	Prpf4	100	99.040	ENSODEG00000018147	PRPF4	100	99.040	Octodon_degus
ENSMUSG00000066148	Prpf4	99	75.096	ENSONIG00000012671	prpf4	99	76.786	Oreochromis_niloticus
ENSMUSG00000066148	Prpf4	100	99.232	ENSOCUG00000005046	PRPF4	100	99.232	Oryctolagus_cuniculus
ENSMUSG00000066148	Prpf4	96	74.701	ENSORLG00000019641	prpf4	99	74.701	Oryzias_latipes
ENSMUSG00000066148	Prpf4	96	74.701	ENSORLG00020019438	prpf4	99	74.701	Oryzias_latipes_hni
ENSMUSG00000066148	Prpf4	96	74.526	ENSOMEG00000020941	prpf4	99	74.526	Oryzias_melastigma
ENSMUSG00000066148	Prpf4	100	94.050	ENSOGAG00000007802	PRPF4	98	94.050	Otolemur_garnettii
ENSMUSG00000066148	Prpf4	100	98.848	ENSOARG00000006319	PRPF4	97	98.848	Ovis_aries
ENSMUSG00000066148	Prpf4	100	99.040	ENSPPAG00000041797	PRPF4	100	99.040	Pan_paniscus
ENSMUSG00000066148	Prpf4	100	99.424	ENSPPRG00000014360	PRPF4	100	99.424	Panthera_pardus
ENSMUSG00000066148	Prpf4	100	99.424	ENSPTIG00000009574	PRPF4	100	99.424	Panthera_tigris_altaica
ENSMUSG00000066148	Prpf4	100	99.040	ENSPTRG00000021274	PRPF4	100	98.851	Pan_troglodytes
ENSMUSG00000066148	Prpf4	100	98.848	ENSPANG00000025776	PRPF4	96	98.848	Papio_anubis
ENSMUSG00000066148	Prpf4	97	81.386	ENSPKIG00000017259	prpf4	99	81.386	Paramormyrops_kingsleyae
ENSMUSG00000066148	Prpf4	100	89.443	ENSPSIG00000010713	PRPF4	90	90.998	Pelodiscus_sinensis
ENSMUSG00000066148	Prpf4	99	58.545	ENSPMGG00000000997	prpf4	99	58.652	Periophthalmus_magnuspinnatus
ENSMUSG00000066148	Prpf4	100	99.808	ENSPEMG00000024115	Prpf4	100	99.808	Peromyscus_maniculatus_bairdii
ENSMUSG00000066148	Prpf4	99	95.136	ENSPCIG00000003821	PRPF4	99	95.136	Phascolarctos_cinereus
ENSMUSG00000066148	Prpf4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSMUSG00000066148	Prpf4	82	69.659	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSMUSG00000066148	Prpf4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSMUSG00000066148	Prpf4	98	98.633	ENSPCAG00000002561	PRPF4	99	98.633	Procavia_capensis
ENSMUSG00000066148	Prpf4	100	98.848	ENSPCOG00000011975	PRPF4	100	98.848	Propithecus_coquereli
ENSMUSG00000066148	Prpf4	100	95.211	ENSPVAG00000004708	PRPF4	100	95.211	Pteropus_vampyrus
ENSMUSG00000066148	Prpf4	96	76.786	ENSPNYG00000008013	prpf4	99	76.786	Pundamilia_nyererei
ENSMUSG00000066148	Prpf4	97	80.594	ENSPNAG00000000697	prpf4	99	80.594	Pygocentrus_nattereri
ENSMUSG00000066148	Prpf4	100	99.808	ENSRNOG00000014777	Prpf4	100	99.808	Rattus_norvegicus
ENSMUSG00000066148	Prpf4	100	99.232	ENSRBIG00000040221	PRPF4	100	99.232	Rhinopithecus_bieti
ENSMUSG00000066148	Prpf4	100	99.232	ENSRROG00000040240	PRPF4	100	99.232	Rhinopithecus_roxellana
ENSMUSG00000066148	Prpf4	100	95.411	ENSSHAG00000017658	PRPF4	100	95.411	Sarcophilus_harrisii
ENSMUSG00000066148	Prpf4	97	82.178	ENSSFOG00015008963	prpf4	99	82.178	Scleropages_formosus
ENSMUSG00000066148	Prpf4	96	75.397	ENSSMAG00000008889	prpf4	99	75.397	Scophthalmus_maximus
ENSMUSG00000066148	Prpf4	96	73.307	ENSSDUG00000022083	prpf4	98	73.506	Seriola_dumerili
ENSMUSG00000066148	Prpf4	96	73.506	ENSSLDG00000008115	prpf4	98	73.705	Seriola_lalandi_dorsalis
ENSMUSG00000066148	Prpf4	100	90.403	ENSSPUG00000015582	PRPF4	100	90.403	Sphenodon_punctatus
ENSMUSG00000066148	Prpf4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
ENSMUSG00000066148	Prpf4	100	99.424	ENSSSCG00000024648	PRPF4	100	99.424	Sus_scrofa
ENSMUSG00000066148	Prpf4	95	90.061	ENSTGUG00000002623	PRPF4	100	90.389	Taeniopygia_guttata
ENSMUSG00000066148	Prpf4	97	75.692	ENSTRUG00000008853	prpf4	99	75.692	Takifugu_rubripes
ENSMUSG00000066148	Prpf4	97	75.050	ENSTNIG00000013250	prpf4	99	75.050	Tetraodon_nigroviridis
ENSMUSG00000066148	Prpf4	100	90.230	ENSTBEG00000000821	PRPF4	100	90.230	Tupaia_belangeri
ENSMUSG00000066148	Prpf4	82	98.993	ENSTTRG00000003246	PRPF4	85	98.993	Tursiops_truncatus
ENSMUSG00000066148	Prpf4	64	96.108	ENSUAMG00000018288	PRPF4	90	96.108	Ursus_americanus
ENSMUSG00000066148	Prpf4	100	98.464	ENSUMAG00000019375	PRPF4	100	98.464	Ursus_maritimus
ENSMUSG00000066148	Prpf4	100	98.659	ENSVPAG00000005281	PRPF4	100	98.659	Vicugna_pacos
ENSMUSG00000066148	Prpf4	100	98.095	ENSVVUG00000002476	PRPF4	100	98.095	Vulpes_vulpes
ENSMUSG00000066148	Prpf4	69	58.056	ENSXCOG00000006101	prpf4	93	59.653	Xiphophorus_couchianus
ENSMUSG00000066148	Prpf4	88	64.410	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0030621	U4 snRNA binding	21873635.	IBA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071001	U4/U6 snRNP	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0097525	spliceosomal snRNP complex	-	ISO	Component