EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000067367 (Gene tree)
Gene ID: 17089
Gene Symbol: Lyar
Alias: -
Full Name: Ly1 antibody reactive clone
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 13837
Position: chr5: 38220470-38234306
Accession: 107470
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154975	-	898	-	ENSMUSP00000118337	40 (aa)	-	D6RDT2
ENSMUST00000132190	-	885	-	ENSMUSP00000121320	191 (aa)	-	D3Z345
ENSMUST00000130721	-	873	-	ENSMUSP00000122153	190 (aa)	-	D3Z7N3
ENSMUST00000155300	-	744	-	ENSMUSP00000122486	131 (aa)	-	D3Z5X8
ENSMUST00000202506	-	554	-	ENSMUSP00000144609	45 (aa)	-	A0A0J9YVD4
ENSMUST00000123207	-	557	-	ENSMUSP00000121204	99 (aa)	-	D3YU83
ENSMUST00000114106	-	1504	XM_006503763	ENSMUSP00000109741	388 (aa)	XP_006503826	Q08288
ENSMUST00000146401	-	674	-	ENSMUSP00000114506	40 (aa)	-	D6RDT2
ENSMUST00000087514	-	1563	XM_006503759	ENSMUSP00000084791	388 (aa)	XP_006503822	Q08288
ENSMUST00000131492	-	722	-	-	- (aa)	-	-
ENSMUST00000152066	-	504	-	ENSMUSP00000118035	49 (aa)	-	D3Z009

Gene Model

Click here to download ENSMUSG00000067367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000067367's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000067367	Lyar	100	97.500	ENSG00000145220	LYAR	100	93.671	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	25092918.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001750	photoreceptor outer segment	25735755.	IDA	Component
GO:0003677	DNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	8491376.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0042995	cell projection	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048821	erythrocyte development	-	ISO	Process
GO:0050766	positive regulation of phagocytosis	25735755.	IDA	Process