EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000067860 (Gene tree)
Gene ID: 22773
Gene Symbol: Zic3
Alias: Ka
Full Name: zinc finger protein of the cerebellum 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 19037 bases
Position: chrX:58022700-58041736
Accession: 106676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000086003	zf-C2H2	PF00096.26	1.1e-22	1	4
ENSMUSP00000086003	zf-C2H2	PF00096.26	1.1e-22	2	4
ENSMUSP00000086003	zf-C2H2	PF00096.26	1.1e-22	3	4
ENSMUSP00000086003	zf-C2H2	PF00096.26	1.1e-22	4	4
ENSMUSP00000085999	zf-C2H2	PF00096.26	4.3e-21	1	4
ENSMUSP00000085999	zf-C2H2	PF00096.26	4.3e-21	2	4
ENSMUSP00000085999	zf-C2H2	PF00096.26	4.3e-21	3	4
ENSMUSP00000085999	zf-C2H2	PF00096.26	4.3e-21	4	4
ENSMUSP00000086001	zf-C2H2	PF00096.26	2.7e-20	1	4
ENSMUSP00000086001	zf-C2H2	PF00096.26	2.7e-20	2	4
ENSMUSP00000086001	zf-C2H2	PF00096.26	2.7e-20	3	4
ENSMUSP00000086001	zf-C2H2	PF00096.26	2.7e-20	4	4
ENSMUSP00000086003	zf-met	PF12874.7	0.0001	1	1
ENSMUSP00000086001	zf-met	PF12874.7	0.00099	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000088627	-	3949	XM_006527973	ENSMUSP00000085999	466 (aa)	XP_006528036	Q62521
ENSMUST00000088631	-	2980	-	ENSMUSP00000086003	246 (aa)	-	A2AWK6
ENSMUST00000137687	-	566	-	ENSMUSP00000116383	89 (aa)	-	A2AWK4
ENSMUST00000088629	-	1951	XM_011247579	ENSMUSP00000086001	456 (aa)	XP_011245881	Q62521

Gene Model

Click here to download ENSMUSG00000067860's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000067860's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000067860	Zic3	100	99.593	ENSG00000156925	ZIC3	100	98.287	Homo_sapiens
ENSMUSG00000067860	Zic3	100	99.593	ENSANAG00000019614	ZIC3	100	98.073	Aotus_nancymaae
ENSMUSG00000067860	Zic3	100	99.593	ENSCJAG00000013792	ZIC3	100	97.645	Callithrix_jacchus
ENSMUSG00000067860	Zic3	100	99.593	ENSCAFG00000018979	ZIC3	100	97.645	Canis_familiaris
ENSMUSG00000067860	Zic3	100	99.593	ENSTSYG00000003356	ZIC3	100	95.075	Carlito_syrichta
ENSMUSG00000067860	Zic3	100	98.374	ENSCPOG00000002374	ZIC3	100	98.374	Cavia_porcellus
ENSMUSG00000067860	Zic3	100	99.593	ENSCCAG00000025983	ZIC3	100	97.859	Cebus_capucinus
ENSMUSG00000067860	Zic3	100	99.593	ENSCATG00000036569	ZIC3	100	97.859	Cercocebus_atys
ENSMUSG00000067860	Zic3	100	99.593	ENSCLAG00000001934	ZIC3	100	98.498	Chinchilla_lanigera
ENSMUSG00000067860	Zic3	97	94.191	ENSCPBG00000026115	ZIC3	100	86.468	Chrysemys_picta_bellii
ENSMUSG00000067860	Zic3	100	99.593	ENSCANG00000017505	ZIC3	100	97.645	Colobus_angolensis_palliatus
ENSMUSG00000067860	Zic3	100	100.000	ENSCGRG00001024527	Zic3	100	99.571	Cricetulus_griseus_chok1gshd
ENSMUSG00000067860	Zic3	100	99.187	ENSDORG00000025481	Zic3	100	97.854	Dipodomys_ordii
ENSMUSG00000067860	Zic3	100	99.593	ENSFCAG00000025684	ZIC3	100	97.645	Felis_catus
ENSMUSG00000067860	Zic3	100	99.187	ENSFDAG00000014929	ZIC3	100	99.187	Fukomys_damarensis
ENSMUSG00000067860	Zic3	95	79.866	ENSGAGG00000004149	ZIC3	92	79.866	Gopherus_agassizii
ENSMUSG00000067860	Zic3	100	99.593	ENSGGOG00000011914	ZIC3	100	98.287	Gorilla_gorilla
ENSMUSG00000067860	Zic3	100	99.187	ENSHGLG00000006298	ZIC3	100	98.069	Heterocephalus_glaber_female
ENSMUSG00000067860	Zic3	100	60.569	ENSHGLG00100002829	ZIC3	100	77.070	Heterocephalus_glaber_male
ENSMUSG00000067860	Zic3	100	99.593	ENSJJAG00000022714	Zic3	100	99.142	Jaculus_jaculus
ENSMUSG00000067860	Zic3	100	91.093	ENSLACG00000014597	ZIC3	100	76.445	Latimeria_chalumnae
ENSMUSG00000067860	Zic3	100	97.967	ENSLAFG00000007048	ZIC3	100	92.462	Loxodonta_africana
ENSMUSG00000067860	Zic3	100	99.593	ENSMFAG00000027018	ZIC3	100	97.859	Macaca_fascicularis
ENSMUSG00000067860	Zic3	100	97.155	ENSMMUG00000002023	ZIC3	100	97.155	Macaca_mulatta
ENSMUSG00000067860	Zic3	100	99.593	ENSMNEG00000040682	ZIC3	100	97.859	Macaca_nemestrina
ENSMUSG00000067860	Zic3	100	99.593	ENSMLEG00000004378	ZIC3	100	97.859	Mandrillus_leucophaeus
ENSMUSG00000067860	Zic3	100	100.000	ENSMAUG00000009402	Zic3	100	99.785	Mesocricetus_auratus
ENSMUSG00000067860	Zic3	100	99.593	ENSMICG00000042529	ZIC3	100	98.073	Microcebus_murinus
ENSMUSG00000067860	Zic3	100	100.000	ENSMOCG00000020544	Zic3	100	99.356	Microtus_ochrogaster
ENSMUSG00000067860	Zic3	100	100.000	MGP_CAROLIEiJ_G0033101	Zic3	100	100.000	Mus_caroli
ENSMUSG00000067860	Zic3	100	100.000	MGP_PahariEiJ_G0031644	Zic3	100	100.000	Mus_pahari
ENSMUSG00000067860	Zic3	100	100.000	MGP_SPRETEiJ_G0034256	Zic3	100	100.000	Mus_spretus
ENSMUSG00000067860	Zic3	100	99.593	ENSNGAG00000023346	Zic3	100	98.712	Nannospalax_galili
ENSMUSG00000067860	Zic3	100	99.187	ENSNLEG00000003005	-	100	98.221	Nomascus_leucogenys
ENSMUSG00000067860	Zic3	100	99.593	ENSODEG00000005556	ZIC3	100	98.283	Octodon_degus
ENSMUSG00000067860	Zic3	100	99.593	ENSPPAG00000030013	ZIC3	100	98.287	Pan_paniscus
ENSMUSG00000067860	Zic3	100	99.187	ENSPPRG00000010839	ZIC3	100	97.645	Panthera_pardus
ENSMUSG00000067860	Zic3	100	99.593	ENSPTRG00000043849	ZIC3	100	98.287	Pan_troglodytes
ENSMUSG00000067860	Zic3	100	99.593	ENSPANG00000011357	ZIC3	100	97.859	Papio_anubis
ENSMUSG00000067860	Zic3	100	86.640	ENSPKIG00000017705	zic3	100	73.291	Paramormyrops_kingsleyae
ENSMUSG00000067860	Zic3	100	93.574	ENSPSIG00000011896	ZIC3	99	90.753	Pelodiscus_sinensis
ENSMUSG00000067860	Zic3	100	100.000	ENSPEMG00000022168	Zic3	100	99.785	Peromyscus_maniculatus_bairdii
ENSMUSG00000067860	Zic3	100	99.187	ENSPCOG00000021557	ZIC3	100	97.645	Propithecus_coquereli
ENSMUSG00000067860	Zic3	100	100.000	ENSRNOG00000000861	Zic3	100	99.571	Rattus_norvegicus
ENSMUSG00000067860	Zic3	100	99.593	ENSRBIG00000030660	ZIC3	100	97.645	Rhinopithecus_bieti
ENSMUSG00000067860	Zic3	100	99.593	ENSRROG00000028410	ZIC3	100	97.645	Rhinopithecus_roxellana
ENSMUSG00000067860	Zic3	100	99.593	ENSSBOG00000024684	ZIC3	100	98.287	Saimiri_boliviensis_boliviensis
ENSMUSG00000067860	Zic3	100	85.425	ENSSFOG00015011731	zic3	100	74.464	Scleropages_formosus
ENSMUSG00000067860	Zic3	100	86.235	ENSSFOG00015008079	zic3	100	68.670	Scleropages_formosus
ENSMUSG00000067860	Zic3	95	90.171	ENSTGUG00000002155	ZIC3	100	82.741	Taeniopygia_guttata
ENSMUSG00000067860	Zic3	100	99.593	ENSVVUG00000021378	ZIC3	100	97.645	Vulpes_vulpes
ENSMUSG00000067860	Zic3	99	87.045	ENSXETG00000024458	zic3	100	76.972	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	18298960.	IDA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	11053430.	IDA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	11053430.	IDA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0001947	heart looping	16496285.	IGI	Process
GO:0001947	heart looping	15384171.16496285.	IMP	Process
GO:0001947	heart looping	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	11053430.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005515	protein binding	15207726.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11238441.15207726.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	15207726.	IDA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007368	determination of left/right symmetry	16496285.	IGI	Process
GO:0007368	determination of left/right symmetry	15384171.16496285.	IMP	Process
GO:0007368	determination of left/right symmetry	-	ISO	Process
GO:0007389	pattern specification process	11959836.	IMP	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0007417	central nervous system development	21873635.	IBA	Process
GO:0009952	anterior/posterior pattern specification	16496285.	IGI	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0030324	lung development	-	ISO	Process
GO:0035469	determination of pancreatic left/right asymmetry	-	ISO	Process
GO:0035545	determination of left/right asymmetry in nervous system	11959836.	IMP	Process
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0045893	positive regulation of transcription, DNA-templated	11053430.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	11053430.16496285.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071907	determination of digestive tract left/right asymmetry	-	ISO	Process
GO:0071910	determination of liver left/right asymmetry	-	ISO	Process