EuRBPDB

Description
Ensembl ID
ENSMUSG00000068699 (Gene tree)
Gene ID
68794
Gene Symbol
Flnc
Alias
1110055E19Rik|Fln2|actin binding protein 280
Full Name
filamin C%2C gamma
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
28628
Position
chr6: 29433256-29461883
Accession
95557
RBP type
non-canonical RBP
Summary
-
RNA binding proteome (RBPome)
PID
Title
Method
Time
Author
Doi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
adrenal_glandbrainforestomachheartkidneylarge_intestineliverlungmuscleovarysmall_intestinespleenstomachtestisthymusuterusvesicular_gland010203040506070
adrenal_glandbrainforestomachheartkidneylarge_intestineliverlungmuscleovarysmall_intestinespleenstomachtestisthymusuterusvesicular_glandTPM
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSMUST00000148404-1151--- (aa)--
ENSMUST00000101617-8939-ENSMUSP000000991392693 (aa)-Q8VHX6
ENSMUST00000065090-9038-ENSMUSP000000641632726 (aa)-Q8VHX6
Gene Model
Pathways
Pathway ID
Pathway Name
Source
mmu04010MAPK signaling pathwayKEGG
mmu04510Focal adhesionKEGG
mmu05132Salmonella infectionKEGG
mmu05205Proteoglycans in cancerKEGG
Protein-Protein Interaction (PPI)
Orthologs identified by RBPome
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSMUSG00000068699Flnc8586.207ENSG00000196924FLNA10086.207Homo_sapiens
ENSMUSG00000068699Flnc8985.294ENSMUSG00000031328Flna10085.294Mus_musculus
Gene Ontology
Go ID
Go_term
PubmedID
Evidence
Category
GO:0003779actin binding8088838.TASFunction
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005856cytoskeleton-IEAComponent
GO:0005886plasma membrane-ISOComponent
GO:0008092cytoskeletal protein binding-ISOFunction
GO:0015629actin cytoskeleton8088838.TASComponent
GO:0016020membrane-IEAComponent
GO:0016528sarcoplasm-ISOComponent
GO:0030029actin filament-based process8088838.TASProcess
GO:0030506ankyrin binding-ISOFunction
GO:0042383sarcolemma-ISOComponent
GO:0042802identical protein binding-ISOFunction
GO:0048747muscle fiber development16914736.IDAProcess
GO:0051015actin filament binding-IEAFunction