EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000092956	-	18099	XM_006527253	ENSMUSP00000090633	5656 (aa)	XP_006527316	E9Q616
ENSMUST00000092955	-	1046	-	ENSMUSP00000090632	150 (aa)	-	G5E8K8

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000069833	Ahnak	100	90.000	ENSG00000124942	AHNAK	100	97.674	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	20405035.	IPI	Function
GO:0005634	nucleus	21940993.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	21940993.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005886	plasma membrane	21940993.	ISS	Component
GO:0005911	cell-cell junction	8408266.	ISS	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0015629	actin cytoskeleton	21940993.	ISS	Component
GO:0030315	T-tubule	21873635.	IBA	Component
GO:0030315	T-tubule	20833135.	IDA	Component
GO:0031982	vesicle	-	ISO	Component
GO:0031982	vesicle	21940993.	ISS	Component
GO:0042383	sarcolemma	-	ISO	Component
GO:0043034	costamere	21873635.	IBA	Component
GO:0043034	costamere	20833135.	IDA	Component
GO:0043484	regulation of RNA splicing	21873635.	IBA	Process
GO:0043484	regulation of RNA splicing	21940993.	IDA	Process
GO:0044291	cell-cell contact zone	-	ISO	Component
GO:0044291	cell-cell contact zone	21940993.	ISS	Component
GO:0044548	S100 protein binding	-	ISO	Function
GO:0045121	membrane raft	-	ISO	Component
GO:0045121	membrane raft	21940993.	ISS	Component
GO:0051259	protein complex oligomerization	21940993.	IMP	Process
GO:0070062	extracellular exosome	-	ISO	Component
GO:0097493	structural molecule activity conferring elasticity	20833135.	IMP	Function
GO:1901385	regulation of voltage-gated calcium channel activity	-	ISO	Process