EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000069867 (Gene tree)
Gene ID: 382035
Gene Symbol: Pabpn1l
Alias: LOC382035|ePABP2
Full Name: poly(A)binding protein nuclear 1-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 3269 bases
Position: chr8:122619471-122622739
Accession: 2685954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000090747	RRM_1	PF00076.22	2.2e-15	1	1
ENSMUSP00000148736	RRM_1	PF00076.22	2.4e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000093059	-	1148	-	ENSMUSP00000090747	273 (aa)	-	Q5XFR0
ENSMUST00000212966	-	1113	-	ENSMUSP00000148736	288 (aa)	-	B7ZP52

Gene Model

Click here to download ENSMUSG00000069867's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG
mmu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000069867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000069867	Pabpn1l	51	54.422	ENSMUSG00000022194	Pabpn1	92	51.899
ENSMUSG00000069867	Pabpn1l	51	54.422	ENSMUSG00000092232	Gm20521	58	46.305

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000069867	Pabpn1l	100	66.308	ENSG00000205022	PABPN1L	100	66.308	Homo_sapiens
ENSMUSG00000069867	Pabpn1l	53	55.102	ENSAPOG00000000685	PABPN1L	65	48.077	Acanthochromis_polyacanthus
ENSMUSG00000069867	Pabpn1l	53	53.741	ENSACIG00000021400	PABPN1L	85	54.375	Amphilophus_citrinellus
ENSMUSG00000069867	Pabpn1l	58	52.201	ENSATEG00000011646	PABPN1L	75	48.223	Anabas_testudineus
ENSMUSG00000069867	Pabpn1l	71	54.592	ENSACAG00000013250	PABPN1L	100	54.592	Anolis_carolinensis
ENSMUSG00000069867	Pabpn1l	100	62.094	ENSANAG00000038178	PABPN1L	100	63.538	Aotus_nancymaae
ENSMUSG00000069867	Pabpn1l	58	50.617	ENSACLG00000025147	PABPN1L	76	45.755	Astatotilapia_calliptera
ENSMUSG00000069867	Pabpn1l	58	54.430	ENSAMXG00000010873	PABPN1L	71	51.323	Astyanax_mexicanus
ENSMUSG00000069867	Pabpn1l	51	72.662	ENSBTAG00000006727	-	85	72.662	Bos_taurus
ENSMUSG00000069867	Pabpn1l	100	62.724	ENSBTAG00000023752	-	100	63.799	Bos_taurus
ENSMUSG00000069867	Pabpn1l	100	61.818	ENSCJAG00000045284	PABPN1L	100	64.493	Callithrix_jacchus
ENSMUSG00000069867	Pabpn1l	100	62.105	ENSCHIG00000013987	PABPN1L	100	62.105	Capra_hircus
ENSMUSG00000069867	Pabpn1l	95	62.313	ENSCAPG00000007240	PABPN1L	100	62.687	Cavia_aperea
ENSMUSG00000069867	Pabpn1l	100	63.504	ENSCPOG00000025951	PABPN1L	100	63.869	Cavia_porcellus
ENSMUSG00000069867	Pabpn1l	100	61.232	ENSCCAG00000027631	PABPN1L	100	63.899	Cebus_capucinus
ENSMUSG00000069867	Pabpn1l	100	65.091	ENSCATG00000031060	PABPN1L	100	66.667	Cercocebus_atys
ENSMUSG00000069867	Pabpn1l	100	64.964	ENSCLAG00000000704	PABPN1L	100	64.964	Chinchilla_lanigera
ENSMUSG00000069867	Pabpn1l	100	63.014	ENSCSAG00000002881	PABPN1L	100	63.699	Chlorocebus_sabaeus
ENSMUSG00000069867	Pabpn1l	60	57.229	ENSCPBG00000023441	PABPN1L	61	53.807	Chrysemys_picta_bellii
ENSMUSG00000069867	Pabpn1l	100	62.319	ENSCANG00000039336	PABPN1L	100	64.621	Colobus_angolensis_palliatus
ENSMUSG00000069867	Pabpn1l	100	77.818	ENSCGRG00001013211	Pabpn1l	100	80.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000069867	Pabpn1l	100	77.818	ENSCGRG00000015868	Pabpn1l	100	80.000	Cricetulus_griseus_crigri
ENSMUSG00000069867	Pabpn1l	100	50.896	ENSDNOG00000034677	PABPN1L	100	55.830	Dasypus_novemcinctus
ENSMUSG00000069867	Pabpn1l	100	64.029	ENSEASG00005000777	PABPN1L	100	64.029	Equus_asinus_asinus
ENSMUSG00000069867	Pabpn1l	100	64.388	ENSECAG00000000378	PABPN1L	100	64.388	Equus_caballus
ENSMUSG00000069867	Pabpn1l	100	58.759	ENSEEUG00000004747	PABPN1L	100	58.759	Erinaceus_europaeus
ENSMUSG00000069867	Pabpn1l	54	55.405	ENSELUG00000018385	PABPN1L	67	49.198	Esox_lucius
ENSMUSG00000069867	Pabpn1l	100	63.799	ENSFCAG00000010465	PABPN1L	100	63.799	Felis_catus
ENSMUSG00000069867	Pabpn1l	72	52.792	ENSFALG00000003319	PABPN1L	79	52.792	Ficedula_albicollis
ENSMUSG00000069867	Pabpn1l	100	67.518	ENSFDAG00000021067	PABPN1L	100	67.518	Fukomys_damarensis
ENSMUSG00000069867	Pabpn1l	59	49.383	ENSFHEG00000018295	PABPN1L	76	48.113	Fundulus_heteroclitus
ENSMUSG00000069867	Pabpn1l	53	60.135	ENSGALG00000006242	PABPN1L	84	60.135	Gallus_gallus
ENSMUSG00000069867	Pabpn1l	65	53.552	ENSGAGG00000010613	PABPN1L	61	53.514	Gopherus_agassizii
ENSMUSG00000069867	Pabpn1l	100	65.455	ENSGGOG00000012670	PABPN1L	100	67.029	Gorilla_gorilla
ENSMUSG00000069867	Pabpn1l	58	50.617	ENSHBUG00000002388	PABPN1L	76	46.226	Haplochromis_burtoni
ENSMUSG00000069867	Pabpn1l	96	66.412	ENSHGLG00000014207	PABPN1L	100	66.412	Heterocephalus_glaber_female
ENSMUSG00000069867	Pabpn1l	96	66.412	ENSHGLG00100005230	PABPN1L	100	66.412	Heterocephalus_glaber_male
ENSMUSG00000069867	Pabpn1l	100	64.516	ENSSTOG00000020814	PABPN1L	100	64.516	Ictidomys_tridecemlineatus
ENSMUSG00000069867	Pabpn1l	100	68.727	ENSJJAG00000006433	Pabpn1l	100	68.727	Jaculus_jaculus
ENSMUSG00000069867	Pabpn1l	71	60.714	ENSLAFG00000025902	-	86	56.164	Loxodonta_africana
ENSMUSG00000069867	Pabpn1l	100	64.364	ENSMFAG00000002924	PABPN1L	100	65.942	Macaca_fascicularis
ENSMUSG00000069867	Pabpn1l	100	64.000	ENSMMUG00000012438	PABPN1L	100	65.580	Macaca_mulatta
ENSMUSG00000069867	Pabpn1l	100	64.364	ENSMNEG00000044808	PABPN1L	100	65.942	Macaca_nemestrina
ENSMUSG00000069867	Pabpn1l	100	65.091	ENSMLEG00000032667	PABPN1L	100	66.667	Mandrillus_leucophaeus
ENSMUSG00000069867	Pabpn1l	58	50.617	ENSMZEG00005002186	PABPN1L	76	45.755	Maylandia_zebra
ENSMUSG00000069867	Pabpn1l	100	78.545	ENSMAUG00000014032	Pabpn1l	100	80.228	Mesocricetus_auratus
ENSMUSG00000069867	Pabpn1l	100	65.818	ENSMICG00000028179	PABPN1L	100	65.818	Microcebus_murinus
ENSMUSG00000069867	Pabpn1l	100	78.022	ENSMOCG00000007955	Pabpn1l	100	78.022	Microtus_ochrogaster
ENSMUSG00000069867	Pabpn1l	99	52.364	ENSMODG00000003873	-	99	53.285	Monodelphis_domestica
ENSMUSG00000069867	Pabpn1l	64	48.851	ENSMALG00000016926	PABPN1L	76	45.972	Monopterus_albus
ENSMUSG00000069867	Pabpn1l	100	97.802	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	97.802	Mus_caroli
ENSMUSG00000069867	Pabpn1l	100	93.407	MGP_PahariEiJ_G0023268	Pabpn1l	100	93.407	Mus_pahari
ENSMUSG00000069867	Pabpn1l	100	98.168	MGP_SPRETEiJ_G0032788	Pabpn1l	100	98.168	Mus_spretus
ENSMUSG00000069867	Pabpn1l	82	54.008	ENSMLUG00000003228	PABPN1L	78	54.008	Myotis_lucifugus
ENSMUSG00000069867	Pabpn1l	100	75.912	ENSNGAG00000023992	Pabpn1l	100	75.912	Nannospalax_galili
ENSMUSG00000069867	Pabpn1l	58	50.311	ENSNBRG00000017078	PABPN1L	78	47.716	Neolamprologus_brichardi
ENSMUSG00000069867	Pabpn1l	100	67.148	ENSOPRG00000005597	PABPN1L	100	67.148	Ochotona_princeps
ENSMUSG00000069867	Pabpn1l	100	59.170	ENSODEG00000004649	PABPN1L	100	59.170	Octodon_degus
ENSMUSG00000069867	Pabpn1l	98	51.625	ENSOANG00000013901	PABPN1L	98	53.704	Ornithorhynchus_anatinus
ENSMUSG00000069867	Pabpn1l	75	48.325	ENSORLG00000026560	PABPN1L	76	48.325	Oryzias_latipes
ENSMUSG00000069867	Pabpn1l	75	48.325	ENSORLG00020015068	PABPN1L	76	48.325	Oryzias_latipes_hni
ENSMUSG00000069867	Pabpn1l	75	48.325	ENSORLG00015000397	PABPN1L	76	48.325	Oryzias_latipes_hsok
ENSMUSG00000069867	Pabpn1l	83	44.105	ENSOMEG00000017896	PABPN1L	59	44.105	Oryzias_melastigma
ENSMUSG00000069867	Pabpn1l	100	63.273	ENSOGAG00000000433	PABPN1L	100	63.273	Otolemur_garnettii
ENSMUSG00000069867	Pabpn1l	100	61.111	ENSOARG00000013682	PABPN1L	100	62.092	Ovis_aries
ENSMUSG00000069867	Pabpn1l	100	65.950	ENSPPAG00000028866	PABPN1L	100	66.308	Pan_paniscus
ENSMUSG00000069867	Pabpn1l	100	63.799	ENSPPRG00000015106	PABPN1L	100	63.799	Panthera_pardus
ENSMUSG00000069867	Pabpn1l	93	59.922	ENSPTIG00000015606	PABPN1L	100	59.922	Panthera_tigris_altaica
ENSMUSG00000069867	Pabpn1l	100	65.950	ENSPTRG00000031120	PABPN1L	100	66.308	Pan_troglodytes
ENSMUSG00000069867	Pabpn1l	100	64.727	ENSPANG00000026039	PABPN1L	100	66.304	Papio_anubis
ENSMUSG00000069867	Pabpn1l	70	51.429	ENSPSIG00000003404	PABPN1L	100	53.171	Pelodiscus_sinensis
ENSMUSG00000069867	Pabpn1l	100	77.737	ENSPEMG00000016624	Pabpn1l	100	77.737	Peromyscus_maniculatus_bairdii
ENSMUSG00000069867	Pabpn1l	52	64.336	ENSPCIG00000007038	-	99	64.336	Phascolarctos_cinereus
ENSMUSG00000069867	Pabpn1l	100	65.468	ENSPPYG00000007655	PABPN1L	100	66.078	Pongo_abelii
ENSMUSG00000069867	Pabpn1l	100	64.727	ENSPCOG00000024077	PABPN1L	100	65.091	Propithecus_coquereli
ENSMUSG00000069867	Pabpn1l	100	64.184	ENSPVAG00000002716	PABPN1L	100	65.248	Pteropus_vampyrus
ENSMUSG00000069867	Pabpn1l	58	50.617	ENSPNYG00000004803	PABPN1L	76	45.755	Pundamilia_nyererei
ENSMUSG00000069867	Pabpn1l	100	85.714	ENSRNOG00000029558	Pabpn1l	100	85.714	Rattus_norvegicus
ENSMUSG00000069867	Pabpn1l	100	65.455	ENSRBIG00000030740	PABPN1L	100	67.029	Rhinopithecus_bieti
ENSMUSG00000069867	Pabpn1l	99	64.234	ENSRROG00000035483	-	99	65.455	Rhinopithecus_roxellana
ENSMUSG00000069867	Pabpn1l	100	66.304	ENSRROG00000032240	-	100	66.304	Rhinopithecus_roxellana
ENSMUSG00000069867	Pabpn1l	100	62.681	ENSSBOG00000018410	PABPN1L	100	63.899	Saimiri_boliviensis_boliviensis
ENSMUSG00000069867	Pabpn1l	99	48.980	ENSSHAG00000010001	-	99	48.980	Sarcophilus_harrisii
ENSMUSG00000069867	Pabpn1l	59	48.148	ENSSDUG00000006986	PABPN1L	76	46.445	Seriola_dumerili
ENSMUSG00000069867	Pabpn1l	59	48.148	ENSSLDG00000021845	PABPN1L	76	46.445	Seriola_lalandi_dorsalis
ENSMUSG00000069867	Pabpn1l	90	52.653	ENSSARG00000005178	-	97	52.653	Sorex_araneus
ENSMUSG00000069867	Pabpn1l	70	56.477	ENSSPUG00000007031	PABPN1L	85	56.345	Sphenodon_punctatus
ENSMUSG00000069867	Pabpn1l	75	44.231	ENSSPAG00000017978	PABPN1L	76	45.498	Stegastes_partitus
ENSMUSG00000069867	Pabpn1l	100	57.401	ENSSSCG00000036367	PABPN1L	100	63.768	Sus_scrofa
ENSMUSG00000069867	Pabpn1l	64	46.409	ENSTRUG00000024725	PABPN1L	74	47.312	Takifugu_rubripes
ENSMUSG00000069867	Pabpn1l	100	60.791	ENSTTRG00000004691	PABPN1L	100	63.441	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	15083517.	ISA	Component
GO:0008143	poly(A) binding	15083517.	ISA	Function
GO:0008150	biological_process	-	ND	Process