EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131035	-	16716	-	ENSMUSP00000115063	5151 (aa)	-	A0A171EBL2
ENSMUST00000093902	-	16716	XM_006534630	ENSMUSP00000091429	5152 (aa)	XP_006534693	E9Q555
ENSMUST00000172235	-	2422	-	ENSMUSP00000130027	312 (aa)	-	Q3U0U2

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000070327	Rnf213	100	72.930	ENSG00000173821	RNF213	100	66.495	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001525	angiogenesis	26126547.	IMP	Process
GO:0001525	angiogenesis	-	ISO	Process
GO:0002040	sprouting angiogenesis	21873635.	IBA	Process
GO:0002040	sprouting angiogenesis	-	ISO	Process
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006511	ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0016567	protein ubiquitination	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0051865	protein autoubiquitination	-	ISO	Process
GO:2000051	negative regulation of non-canonical Wnt signaling pathway	21873635.	IBA	Process
GO:2000051	negative regulation of non-canonical Wnt signaling pathway	-	ISO	Process