EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000070436 (Gene tree)
Gene ID: 12406
Gene Symbol: Serpinh1
Alias: Cbp1|Cbp2|Hsp47|J6|Serpinh2|colligin|gp46
Full Name: serine (or cysteine) peptidase inhibitor%2C clade H%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 7864
Position: chr7: 99345376-99353239
Accession: 88283
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000208749	-	828	-	ENSMUSP00000146515	203 (aa)	-	A0A140LHR4
ENSMUST00000208119	-	2173	XM_006507279	ENSMUSP00000146969	417 (aa)	XP_006507342	P19324
ENSMUST00000169437	-	2274	-	ENSMUSP00000126390	417 (aa)	-	P19324
ENSMUST00000094154	-	2215	-	ENSMUSP00000091706	417 (aa)	-	P19324
ENSMUST00000208292	-	358	-	ENSMUSP00000146373	53 (aa)	-	A0A140LHD6
ENSMUST00000207989	-	592	-	ENSMUSP00000146444	115 (aa)	-	A0A140LHK0
ENSMUST00000207849	-	2128	XM_006507278	ENSMUSP00000147064	417 (aa)	XP_006507341	P19324

Gene Model

Click here to download ENSMUSG00000070436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000070436's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000070436	Serpinh1	92	96.354	ENSG00000149257	SERPINH1	100	97.015	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003433	chondrocyte development involved in endochondral bone morphogenesis	22492985.	IMP	Process
GO:0004867	serine-type endopeptidase inhibitor activity	21873635.	IBA	Function
GO:0005515	protein binding	10862616.	IPI	Function
GO:0005518	collagen binding	-	IEA	Function
GO:0005615	extracellular space	-	IEA	Component
GO:0005737	cytoplasm	8018053.	IDA	Component
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	21606205.	IDA	Component
GO:0005783	endoplasmic reticulum	23269685.	ISO	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	-	ISO	Component
GO:0010951	negative regulation of endopeptidase activity	21873635.	IBA	Process
GO:0030199	collagen fibril organization	21873635.	IBA	Process
GO:0030199	collagen fibril organization	10995453.22492985.	IMP	Process
GO:0032964	collagen biosynthetic process	10995453.	IMP	Process
GO:0045121	membrane raft	-	ISO	Component
GO:0051082	unfolded protein binding	10862616.	IDA	Function
GO:0051604	protein maturation	10995453.	IMP	Process
GO:0062023	collagen-containing extracellular matrix	22159717.28071719.	HDA	Component