EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000070697 (Gene tree)
Gene ID: 65961
Gene Symbol: Utp3
Alias: 2400011K09Rik|Crlz1
Full Name: UTP3 small subunit processome component
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 1629 bases
Position: chr5:88554462-88556090
Accession: 1919230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000087896	Sas10_Utp3	PF04000.15	1.3e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000090413	-	1629	-	ENSMUSP00000087896	469 (aa)	-	Q9JI13

Gene Model

Click here to download ENSMUSG00000070697's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000070697's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000070697	Utp3	100	83.090	ENSG00000132467	UTP3	100	84.969	Homo_sapiens
ENSMUSG00000070697	Utp3	93	54.425	ENSAPOG00000018006	utp3	93	54.525	Acanthochromis_polyacanthus
ENSMUSG00000070697	Utp3	100	82.390	ENSAMEG00000019540	UTP3	100	82.809	Ailuropoda_melanoleuca
ENSMUSG00000070697	Utp3	93	49.428	ENSACIG00000010913	utp3	93	49.428	Amphilophus_citrinellus
ENSMUSG00000070697	Utp3	95	52.766	ENSAOCG00000016134	utp3	93	53.846	Amphiprion_ocellaris
ENSMUSG00000070697	Utp3	95	52.340	ENSAPEG00000003914	utp3	93	53.407	Amphiprion_percula
ENSMUSG00000070697	Utp3	93	50.333	ENSATEG00000024940	utp3	99	51.327	Anabas_testudineus
ENSMUSG00000070697	Utp3	77	56.614	ENSACAG00000012860	UTP3	99	51.489	Anolis_carolinensis
ENSMUSG00000070697	Utp3	100	84.342	ENSANAG00000031723	UTP3	100	83.716	Aotus_nancymaae
ENSMUSG00000070697	Utp3	97	51.458	ENSACLG00000015170	utp3	99	51.452	Astatotilapia_calliptera
ENSMUSG00000070697	Utp3	78	53.003	ENSAMXG00000032941	utp3	92	53.158	Astyanax_mexicanus
ENSMUSG00000070697	Utp3	100	80.544	ENSBTAG00000009310	UTP3	100	80.962	Bos_taurus
ENSMUSG00000070697	Utp3	100	82.780	ENSCJAG00000042824	UTP3	100	82.780	Callithrix_jacchus
ENSMUSG00000070697	Utp3	100	83.648	ENSCAFG00000002913	UTP3	100	83.229	Canis_familiaris
ENSMUSG00000070697	Utp3	100	78.692	ENSCAFG00020027071	UTP3	100	77.871	Canis_lupus_dingo
ENSMUSG00000070697	Utp3	100	80.962	ENSCHIG00000002276	UTP3	100	81.381	Capra_hircus
ENSMUSG00000070697	Utp3	99	81.489	ENSCPOG00000005869	UTP3	99	80.213	Cavia_porcellus
ENSMUSG00000070697	Utp3	100	85.356	ENSCCAG00000032341	UTP3	100	84.937	Cebus_capucinus
ENSMUSG00000070697	Utp3	100	85.115	ENSCATG00000016403	UTP3	100	85.115	Cercocebus_atys
ENSMUSG00000070697	Utp3	97	83.043	ENSCLAG00000017606	UTP3	100	83.158	Chinchilla_lanigera
ENSMUSG00000070697	Utp3	100	83.576	ENSCSAG00000000420	UTP3	100	83.784	Chlorocebus_sabaeus
ENSMUSG00000070697	Utp3	99	53.550	ENSCPBG00000019489	UTP3	99	53.846	Chrysemys_picta_bellii
ENSMUSG00000070697	Utp3	91	35.698	ENSCING00000007582	-	93	37.584	Ciona_intestinalis
ENSMUSG00000070697	Utp3	93	34.802	ENSCSAVG00000010608	-	94	35.650	Ciona_savignyi
ENSMUSG00000070697	Utp3	100	81.667	ENSCANG00000016915	UTP3	100	83.333	Colobus_angolensis_palliatus
ENSMUSG00000070697	Utp3	100	90.105	ENSCGRG00001001299	Utp3	100	90.105	Cricetulus_griseus_chok1gshd
ENSMUSG00000070697	Utp3	100	89.895	ENSCGRG00000019120	Utp3	100	89.895	Cricetulus_griseus_crigri
ENSMUSG00000070697	Utp3	74	47.606	ENSCSEG00000021698	utp3	89	48.442	Cynoglossus_semilaevis
ENSMUSG00000070697	Utp3	93	51.225	ENSCVAG00000011971	utp3	93	52.116	Cyprinodon_variegatus
ENSMUSG00000070697	Utp3	93	50.562	ENSDARG00000056720	utp3	93	51.011	Danio_rerio
ENSMUSG00000070697	Utp3	100	80.672	ENSDNOG00000002962	UTP3	100	80.462	Dasypus_novemcinctus
ENSMUSG00000070697	Utp3	100	82.773	ENSDORG00000023913	Utp3	100	82.563	Dipodomys_ordii
ENSMUSG00000070697	Utp3	74	39.776	FBgn0029755	Sas10	80	40.896	Drosophila_melanogaster
ENSMUSG00000070697	Utp3	93	38.229	ENSEBUG00000015686	utp3	93	38.043	Eptatretus_burgeri
ENSMUSG00000070697	Utp3	100	83.682	ENSEASG00005016702	UTP3	100	83.682	Equus_asinus_asinus
ENSMUSG00000070697	Utp3	100	83.891	ENSECAG00000005387	UTP3	100	83.891	Equus_caballus
ENSMUSG00000070697	Utp3	93	51.121	ENSELUG00000001527	utp3	93	52.242	Esox_lucius
ENSMUSG00000070697	Utp3	100	82.121	ENSFCAG00000007268	UTP3	100	83.368	Felis_catus
ENSMUSG00000070697	Utp3	78	53.435	ENSFALG00000014560	UTP3	77	56.649	Ficedula_albicollis
ENSMUSG00000070697	Utp3	91	50.667	ENSFHEG00000018565	utp3	86	51.786	Fundulus_heteroclitus
ENSMUSG00000070697	Utp3	84	49.257	ENSGMOG00000001824	utp3	92	50.815	Gadus_morhua
ENSMUSG00000070697	Utp3	74	59.079	ENSGALG00000047103	UTP3	69	59.621	Gallus_gallus
ENSMUSG00000070697	Utp3	93	51.747	ENSGAFG00000012330	utp3	93	52.539	Gambusia_affinis
ENSMUSG00000070697	Utp3	77	55.163	ENSGACG00000007417	utp3	90	55.676	Gasterosteus_aculeatus
ENSMUSG00000070697	Utp3	99	54.656	ENSGAGG00000003975	UTP3	99	53.036	Gopherus_agassizii
ENSMUSG00000070697	Utp3	100	83.264	ENSGGOG00000025335	UTP3	100	85.565	Gorilla_gorilla
ENSMUSG00000070697	Utp3	97	51.042	ENSHBUG00000003276	utp3	99	51.452	Haplochromis_burtoni
ENSMUSG00000070697	Utp3	97	82.456	ENSHGLG00000020163	UTP3	100	80.679	Heterocephalus_glaber_female
ENSMUSG00000070697	Utp3	97	82.237	ENSHGLG00100020125	UTP3	100	80.467	Heterocephalus_glaber_male
ENSMUSG00000070697	Utp3	78	53.298	ENSHCOG00000020540	utp3	83	53.457	Hippocampus_comes
ENSMUSG00000070697	Utp3	93	49.220	ENSIPUG00000014510	Utp3	93	50.557	Ictalurus_punctatus
ENSMUSG00000070697	Utp3	100	79.202	ENSSTOG00000029126	UTP3	100	80.252	Ictidomys_tridecemlineatus
ENSMUSG00000070697	Utp3	100	80.932	ENSJJAG00000014891	Utp3	100	80.213	Jaculus_jaculus
ENSMUSG00000070697	Utp3	93	51.974	ENSKMAG00000004879	utp3	93	52.434	Kryptolebias_marmoratus
ENSMUSG00000070697	Utp3	93	51.786	ENSLBEG00000024055	utp3	93	52.980	Labrus_bergylta
ENSMUSG00000070697	Utp3	93	49.565	ENSLACG00000009975	utp3	94	49.254	Latimeria_chalumnae
ENSMUSG00000070697	Utp3	81	56.061	ENSLOCG00000001449	utp3	97	59.444	Lepisosteus_oculatus
ENSMUSG00000070697	Utp3	100	74.051	ENSLAFG00000017017	UTP3	100	73.840	Loxodonta_africana
ENSMUSG00000070697	Utp3	100	81.799	ENSMFAG00000013579	UTP3	100	84.100	Macaca_fascicularis
ENSMUSG00000070697	Utp3	100	81.590	ENSMMUG00000014229	UTP3	100	83.891	Macaca_mulatta
ENSMUSG00000070697	Utp3	100	81.799	ENSMNEG00000005112	UTP3	100	84.100	Macaca_nemestrina
ENSMUSG00000070697	Utp3	100	82.427	ENSMLEG00000022236	UTP3	100	84.728	Mandrillus_leucophaeus
ENSMUSG00000070697	Utp3	93	51.549	ENSMAMG00000015467	utp3	93	51.435	Mastacembelus_armatus
ENSMUSG00000070697	Utp3	97	51.458	ENSMZEG00005014455	utp3	99	51.452	Maylandia_zebra
ENSMUSG00000070697	Utp3	72	48.634	ENSMGAG00000009998	UTP3	88	50.286	Meleagris_gallopavo
ENSMUSG00000070697	Utp3	100	88.136	ENSMAUG00000017935	Utp3	100	88.559	Mesocricetus_auratus
ENSMUSG00000070697	Utp3	100	86.229	ENSMOCG00000005434	Utp3	100	85.805	Microtus_ochrogaster
ENSMUSG00000070697	Utp3	88	50.824	ENSMMOG00000010804	utp3	80	53.887	Mola_mola
ENSMUSG00000070697	Utp3	93	68.202	ENSMODG00000019084	UTP3	99	68.602	Monodelphis_domestica
ENSMUSG00000070697	Utp3	92	50.220	ENSMALG00000003443	utp3	93	52.088	Monopterus_albus
ENSMUSG00000070697	Utp3	100	97.034	MGP_CAROLIEiJ_G0027375	Utp3	100	97.034	Mus_caroli
ENSMUSG00000070697	Utp3	75	96.023	MGP_PahariEiJ_G0017153	-	76	94.366	Mus_pahari
ENSMUSG00000070697	Utp3	100	99.360	MGP_SPRETEiJ_G0028372	Utp3	100	99.360	Mus_spretus
ENSMUSG00000070697	Utp3	100	80.713	ENSMPUG00000019074	UTP3	100	80.713	Mustela_putorius_furo
ENSMUSG00000070697	Utp3	100	84.664	ENSMLUG00000003722	UTP3	100	85.084	Myotis_lucifugus
ENSMUSG00000070697	Utp3	100	86.567	ENSNGAG00000012521	Utp3	100	85.288	Nannospalax_galili
ENSMUSG00000070697	Utp3	97	51.767	ENSNBRG00000020374	utp3	99	51.660	Neolamprologus_brichardi
ENSMUSG00000070697	Utp3	100	83.054	ENSNLEG00000018563	UTP3	100	85.146	Nomascus_leucogenys
ENSMUSG00000070697	Utp3	97	82.895	ENSODEG00000018723	UTP3	100	81.104	Octodon_degus
ENSMUSG00000070697	Utp3	97	51.967	ENSONIG00000003918	utp3	99	52.165	Oreochromis_niloticus
ENSMUSG00000070697	Utp3	75	90.541	ENSOANG00000013694	-	100	90.541	Ornithorhynchus_anatinus
ENSMUSG00000070697	Utp3	100	78.526	ENSOCUG00000010003	UTP3	100	78.737	Oryctolagus_cuniculus
ENSMUSG00000070697	Utp3	93	52.889	ENSORLG00000004019	utp3	93	52.125	Oryzias_latipes
ENSMUSG00000070697	Utp3	93	53.524	ENSORLG00020020306	utp3	93	52.784	Oryzias_latipes_hni
ENSMUSG00000070697	Utp3	93	52.434	ENSORLG00015016052	utp3	93	51.893	Oryzias_latipes_hsok
ENSMUSG00000070697	Utp3	93	51.778	ENSOMEG00000022073	utp3	93	52.222	Oryzias_melastigma
ENSMUSG00000070697	Utp3	100	81.458	ENSOGAG00000012878	UTP3	100	81.551	Otolemur_garnettii
ENSMUSG00000070697	Utp3	100	80.962	ENSOARG00000007800	UTP3	100	81.381	Ovis_aries
ENSMUSG00000070697	Utp3	100	83.090	ENSPPAG00000019684	UTP3	100	85.177	Pan_paniscus
ENSMUSG00000070697	Utp3	100	83.613	ENSPPRG00000015468	UTP3	100	84.034	Panthera_pardus
ENSMUSG00000070697	Utp3	100	83.193	ENSPTIG00000006703	UTP3	100	83.613	Panthera_tigris_altaica
ENSMUSG00000070697	Utp3	100	84.519	ENSPANG00000008263	UTP3	100	84.519	Papio_anubis
ENSMUSG00000070697	Utp3	93	49.446	ENSPKIG00000012883	utp3	93	50.554	Paramormyrops_kingsleyae
ENSMUSG00000070697	Utp3	77	60.052	ENSPSIG00000000105	UTP3	62	60.052	Pelodiscus_sinensis
ENSMUSG00000070697	Utp3	93	48.975	ENSPMGG00000023527	utp3	95	46.606	Periophthalmus_magnuspinnatus
ENSMUSG00000070697	Utp3	100	90.446	ENSPEMG00000019223	Utp3	100	91.083	Peromyscus_maniculatus_bairdii
ENSMUSG00000070697	Utp3	93	50.998	ENSPFOG00000014528	utp3	96	52.155	Poecilia_formosa
ENSMUSG00000070697	Utp3	93	49.670	ENSPLAG00000005600	utp3	96	52.034	Poecilia_latipinna
ENSMUSG00000070697	Utp3	93	49.889	ENSPMEG00000019359	utp3	96	51.724	Poecilia_mexicana
ENSMUSG00000070697	Utp3	93	49.002	ENSPREG00000005341	utp3	96	52.052	Poecilia_reticulata
ENSMUSG00000070697	Utp3	100	85.386	ENSPPYG00000014810	UTP3	100	85.177	Pongo_abelii
ENSMUSG00000070697	Utp3	100	78.170	ENSPCAG00000012879	UTP3	100	78.170	Procavia_capensis
ENSMUSG00000070697	Utp3	100	80.167	ENSPVAG00000004333	UTP3	100	81.211	Pteropus_vampyrus
ENSMUSG00000070697	Utp3	93	50.682	ENSPNYG00000017771	utp3	93	50.682	Pundamilia_nyererei
ENSMUSG00000070697	Utp3	93	51.435	ENSPNAG00000000182	utp3	93	52.423	Pygocentrus_nattereri
ENSMUSG00000070697	Utp3	100	91.915	ENSRNOG00000003599	Utp3	100	91.915	Rattus_norvegicus
ENSMUSG00000070697	Utp3	100	85.325	ENSRBIG00000030025	UTP3	100	85.325	Rhinopithecus_bieti
ENSMUSG00000070697	Utp3	100	85.325	ENSRROG00000006709	UTP3	100	85.325	Rhinopithecus_roxellana
ENSMUSG00000070697	Utp3	100	84.342	ENSSBOG00000019914	UTP3	100	84.342	Saimiri_boliviensis_boliviensis
ENSMUSG00000070697	Utp3	91	67.342	ENSSHAG00000018226	UTP3	99	66.046	Sarcophilus_harrisii
ENSMUSG00000070697	Utp3	93	48.546	ENSSFOG00015007775	utp3	93	49.664	Scleropages_formosus
ENSMUSG00000070697	Utp3	93	51.556	ENSSMAG00000015156	utp3	93	51.794	Scophthalmus_maximus
ENSMUSG00000070697	Utp3	93	49.666	ENSSDUG00000014843	utp3	93	51.214	Seriola_dumerili
ENSMUSG00000070697	Utp3	74	53.659	ENSSPUG00000007404	UTP3	74	54.743	Sphenodon_punctatus
ENSMUSG00000070697	Utp3	93	53.363	ENSSPAG00000007106	utp3	93	54.566	Stegastes_partitus
ENSMUSG00000070697	Utp3	100	82.316	ENSSSCG00000028466	UTP3	100	82.526	Sus_scrofa
ENSMUSG00000070697	Utp3	93	50.790	ENSTRUG00000014591	utp3	95	51.322	Takifugu_rubripes
ENSMUSG00000070697	Utp3	95	47.588	ENSTNIG00000014783	utp3	96	52.055	Tetraodon_nigroviridis
ENSMUSG00000070697	Utp3	100	82.664	ENSTTRG00000008390	UTP3	100	82.664	Tursiops_truncatus
ENSMUSG00000070697	Utp3	100	81.551	ENSUAMG00000008914	UTP3	100	82.180	Ursus_americanus
ENSMUSG00000070697	Utp3	100	80.842	ENSUMAG00000003743	UTP3	100	82.600	Ursus_maritimus
ENSMUSG00000070697	Utp3	79	79.733	ENSVVUG00000004285	UTP3	91	78.933	Vulpes_vulpes
ENSMUSG00000070697	Utp3	91	55.708	ENSXETG00000026859	utp3	92	55.581	Xenopus_tropicalis
ENSMUSG00000070697	Utp3	93	51.562	ENSXMAG00000017071	utp3	93	52.009	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005515	protein binding	11404095.	IPI	Function
GO:0005634	nucleus	11404095.	IPI	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007420	brain development	11404095.	IDA	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component