EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000070780 (Gene tree)
Gene ID
245945
Gene Symbol
Rbm47
Alias
9530077J19Rik
Full Name
RNA binding motif protein 47
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
156570 bases
Position
chr5:66016549-66173118
Accession
2384294
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000092348RRM_1PF00076.224.6e-3713
ENSMUSP00000092348RRM_1PF00076.224.6e-3723
ENSMUSP00000092348RRM_1PF00076.224.6e-3733
ENSMUSP00000092349RRM_1PF00076.227.3e-3713
ENSMUSP00000092349RRM_1PF00076.227.3e-3723
ENSMUSP00000092349RRM_1PF00076.227.3e-3733
ENSMUSP00000109353RRM_1PF00076.227.3e-3713
ENSMUSP00000109353RRM_1PF00076.227.3e-3723
ENSMUSP00000109353RRM_1PF00076.227.3e-3733
ENSMUSP00000109355RRM_1PF00076.227.3e-3713
ENSMUSP00000109355RRM_1PF00076.227.3e-3723
ENSMUSP00000109355RRM_1PF00076.227.3e-3733
ENSMUSP00000128016RRM_1PF00076.227.3e-3713
ENSMUSP00000128016RRM_1PF00076.227.3e-3723
ENSMUSP00000128016RRM_1PF00076.227.3e-3733
ENSMUSP00000144122RRM_1PF00076.227.3e-3713
ENSMUSP00000144122RRM_1PF00076.227.3e-3723
ENSMUSP00000144122RRM_1PF00076.227.3e-3733
ENSMUSP00000144325RRM_1PF00076.227.3e-3713
ENSMUSP00000144325RRM_1PF00076.227.3e-3723
ENSMUSP00000144325RRM_1PF00076.227.3e-3733
ENSMUSP00000144505RRM_1PF00076.223.8e-1511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000201561-530-ENSMUSP000001441126 (aa)-UPI0000F2230B
ENSMUST00000167950-4895-ENSMUSP00000128016590 (aa)-Q91WT8
ENSMUST00000201311-504--- (aa)--
ENSMUST00000200852-703-ENSMUSP00000144505158 (aa)-D3Z113
ENSMUST00000201670-464--- (aa)--
ENSMUST00000202794-2398--- (aa)--
ENSMUST00000202700-332-ENSMUSP0000014428713 (aa)-D3Z5E3
ENSMUST00000200775-3180-ENSMUSP00000144325590 (aa)-Q91WT8
ENSMUST00000201544-5211-ENSMUSP00000144122590 (aa)-Q91WT8
ENSMUST00000113724-2186-ENSMUSP00000109353590 (aa)-Q91WT8
ENSMUST00000113726-4703-ENSMUSP00000109355590 (aa)-Q91WT8
ENSMUST00000201605-452--- (aa)--
ENSMUST00000094756-2973XM_006503962ENSMUSP00000092348521 (aa)XP_006504025D3YXZ5
ENSMUST00000094757-4643XM_006503956ENSMUSP00000092349590 (aa)XP_006504019Q91WT8
Gene Model
Click here to download ENSMUSG00000070780's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000070780's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000070780Rbm478967.376ENSMUSG00000052595A1cf9963.192
ENSMUSG00000070780Rbm479473.649ENSMUSG00000033882Rbm466672.468
ENSMUSG00000070780Rbm478150.781ENSMUSG00000044595Dnd15841.748
ENSMUSG00000070780Rbm478858.451ENSMUSG00000032423Syncrip9846.187
ENSMUSG00000070780Rbm478859.859ENSMUSG00000066037Hnrnpr8545.815
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000070780Rbm4710093.671ENSG00000163694RBM4710094.614Homo_sapiens
ENSMUSG00000070780Rbm4710083.777ENSAPOG00000011062rbm4710082.713Acanthochromis_polyacanthus
ENSMUSG00000070780Rbm4710093.277ENSAMEG00000009672RBM4710093.613Ailuropoda_melanoleuca
ENSMUSG00000070780Rbm4710083.777ENSACIG00000011531rbm4710082.713Amphilophus_citrinellus
ENSMUSG00000070780Rbm4710083.777ENSAOCG00000022245rbm4710082.713Amphiprion_ocellaris
ENSMUSG00000070780Rbm4710083.777ENSAPEG00000018304rbm4710082.713Amphiprion_percula
ENSMUSG00000070780Rbm4710082.051ENSATEG00000018400rbm4710080.769Anabas_testudineus
ENSMUSG00000070780Rbm4710087.342ENSAPLG00000013974RBM4710086.486Anas_platyrhynchos
ENSMUSG00000070780Rbm4710084.833ENSACAG00000011833RBM4710084.667Anolis_carolinensis
ENSMUSG00000070780Rbm4710094.304ENSANAG00000029440RBM4710093.613Aotus_nancymaae
ENSMUSG00000070780Rbm4710080.928ENSACLG00000016902rbm4710079.897Astatotilapia_calliptera
ENSMUSG00000070780Rbm4710080.412ENSAMXG00000021794rbm4710079.897Astyanax_mexicanus
ENSMUSG00000070780Rbm4710094.604ENSBTAG00000002356RBM4710094.266Bos_taurus
ENSMUSG00000070780Rbm4710094.304ENSCJAG00000019385RBM4710093.624Callithrix_jacchus
ENSMUSG00000070780Rbm479692.982ENSCAFG00000015898RBM4710091.751Canis_familiaris
ENSMUSG00000070780Rbm478694.853ENSCAFG00020010558RBM479494.203Canis_lupus_dingo
ENSMUSG00000070780Rbm4710094.604ENSCHIG00000026214RBM4710094.098Capra_hircus
ENSMUSG00000070780Rbm479082.520ENSTSYG00000033612RBM479387.611Carlito_syrichta
ENSMUSG00000070780Rbm4710086.195ENSCAPG00000008426RBM4710087.248Cavia_aperea
ENSMUSG00000070780Rbm4710094.415ENSCPOG00000014100RBM4710093.915Cavia_porcellus
ENSMUSG00000070780Rbm4710093.671ENSCCAG00000030129-10093.915Cebus_capucinus
ENSMUSG00000070780Rbm479965.816ENSCCAG00000024397-9965.136Cebus_capucinus
ENSMUSG00000070780Rbm4710093.782ENSCATG00000042064RBM4710093.782Cercocebus_atys
ENSMUSG00000070780Rbm4710093.617ENSCLAG00000001684RBM4710093.122Chinchilla_lanigera
ENSMUSG00000070780Rbm4710093.782ENSCSAG00000017060RBM4710093.782Chlorocebus_sabaeus
ENSMUSG00000070780Rbm4710091.824ENSCHOG00000011731RBM478887.640Choloepus_hoffmanni
ENSMUSG00000070780Rbm4710091.489ENSCPBG00000013831RBM4710088.462Chrysemys_picta_bellii
ENSMUSG00000070780Rbm4710094.286ENSCANG00000019997RBM4710093.782Colobus_angolensis_palliatus
ENSMUSG00000070780Rbm4710091.969ENSCGRG00001020102-10091.969Cricetulus_griseus_chok1gshd
ENSMUSG00000070780Rbm4710097.872ENSCGRG00001000623-10096.796Cricetulus_griseus_chok1gshd
ENSMUSG00000070780Rbm4710097.340ENSCGRG00000007762-10096.835Cricetulus_griseus_crigri
ENSMUSG00000070780Rbm4710091.396ENSCGRG00000014760-10091.396Cricetulus_griseus_crigri
ENSMUSG00000070780Rbm4710078.481ENSCSEG00000004545rbm4710080.000Cynoglossus_semilaevis
ENSMUSG00000070780Rbm4710081.915ENSCVAG00000020144rbm4710082.181Cyprinodon_variegatus
ENSMUSG00000070780Rbm4710076.471ENSDARG00000061985rbm4710079.241Danio_rerio
ENSMUSG00000070780Rbm4710093.038ENSDNOG00000046854RBM4710092.905Dasypus_novemcinctus
ENSMUSG00000070780Rbm4710092.295ENSDORG00000010144Rbm4710092.127Dipodomys_ordii
ENSMUSG00000070780Rbm4710092.785ENSETEG00000009194RBM4710092.785Echinops_telfairi
ENSMUSG00000070780Rbm478277.519ENSEBUG00000011912rbm479575.287Eptatretus_burgeri
ENSMUSG00000070780Rbm4710093.761ENSEASG00005008443RBM4710093.761Equus_asinus_asinus
ENSMUSG00000070780Rbm4710093.761ENSECAG00000004400RBM4710093.761Equus_caballus
ENSMUSG00000070780Rbm4710090.566ENSEEUG00000001194RBM477593.074Erinaceus_europaeus
ENSMUSG00000070780Rbm4710080.506ENSELUG00000006148rbm4710079.597Esox_lucius
ENSMUSG00000070780Rbm4710094.098ENSFCAG00000012399RBM4710093.761Felis_catus
ENSMUSG00000070780Rbm4710088.571ENSFALG00000002861RBM4710088.403Ficedula_albicollis
ENSMUSG00000070780Rbm4710091.489ENSFDAG00000016326RBM4710090.404Fukomys_damarensis
ENSMUSG00000070780Rbm479686.197ENSFHEG00000007938rbm4710074.415Fundulus_heteroclitus
ENSMUSG00000070780Rbm4710079.494ENSGMOG00000014802rbm4710078.481Gadus_morhua
ENSMUSG00000070780Rbm4710088.608ENSGALG00000014267RBM479990.691Gallus_gallus
ENSMUSG00000070780Rbm4710081.646ENSGAFG00000020571rbm479881.383Gambusia_affinis
ENSMUSG00000070780Rbm4710078.061ENSGACG00000016223rbm4710077.296Gasterosteus_aculeatus
ENSMUSG00000070780Rbm4710091.489ENSGAGG00000020051RBM4710088.629Gopherus_agassizii
ENSMUSG00000070780Rbm4710093.782ENSGGOG00000001367RBM4710093.782Gorilla_gorilla
ENSMUSG00000070780Rbm4710080.928ENSHBUG00000003520rbm4710079.897Haplochromis_burtoni
ENSMUSG00000070780Rbm4710091.772ENSHGLG00000016914RBM4710091.772Heterocephalus_glaber_female
ENSMUSG00000070780Rbm4710082.910ENSHGLG00100003071-10083.080Heterocephalus_glaber_male
ENSMUSG00000070780Rbm4710092.061ENSHGLG00100014028-10092.736Heterocephalus_glaber_male
ENSMUSG00000070780Rbm4710079.375ENSHCOG00000002074rbm479981.481Hippocampus_comes
ENSMUSG00000070780Rbm4710082.713ENSIPUG00000004743rbm4710081.649Ictalurus_punctatus
ENSMUSG00000070780Rbm4710093.456ENSSTOG00000004727RBM4710093.456Ictidomys_tridecemlineatus
ENSMUSG00000070780Rbm4710094.595ENSJJAG00000013823Rbm4710093.109Jaculus_jaculus
ENSMUSG00000070780Rbm4710083.333ENSKMAG00000000084rbm4710082.011Kryptolebias_marmoratus
ENSMUSG00000070780Rbm4710081.117ENSLBEG00000008436rbm4710080.319Labrus_bergylta
ENSMUSG00000070780Rbm4710086.170ENSLACG00000007196RBM4710083.250Latimeria_chalumnae
ENSMUSG00000070780Rbm4710086.076ENSLOCG00000012966rbm479581.818Lepisosteus_oculatus
ENSMUSG00000070780Rbm4710093.277ENSLAFG00000011998RBM4710092.605Loxodonta_africana
ENSMUSG00000070780Rbm4710093.782ENSMFAG00000037967RBM4710093.782Macaca_fascicularis
ENSMUSG00000070780Rbm4710093.782ENSMMUG00000012036RBM4710093.782Macaca_mulatta
ENSMUSG00000070780Rbm4710093.671ENSMNEG00000040774RBM4710093.782Macaca_nemestrina
ENSMUSG00000070780Rbm4710095.556ENSMLEG00000041432RBM4710095.556Mandrillus_leucophaeus
ENSMUSG00000070780Rbm4710081.491ENSMAMG00000019143rbm4710080.206Mastacembelus_armatus
ENSMUSG00000070780Rbm4710080.928ENSMZEG00005023659rbm4710079.897Maylandia_zebra
ENSMUSG00000070780Rbm4710088.294ENSMGAG00000012226RBM4710087.793Meleagris_gallopavo
ENSMUSG00000070780Rbm4710098.470ENSMAUG00000006493Rbm4710098.470Mesocricetus_auratus
ENSMUSG00000070780Rbm4710086.678ENSMICG00000026417RBM4710087.521Microcebus_murinus
ENSMUSG00000070780Rbm4710098.276ENSMOCG00000021170Rbm4710098.276Microtus_ochrogaster
ENSMUSG00000070780Rbm4710079.949ENSMMOG00000007260rbm4710078.920Mola_mola
ENSMUSG00000070780Rbm478781.119ENSMODG00000015426-9877.848Monodelphis_domestica
ENSMUSG00000070780Rbm4710084.810ENSMODG00000020561-10080.270Monodelphis_domestica
ENSMUSG00000070780Rbm4710091.223ENSMODG00000007003RBM4710089.882Monodelphis_domestica
ENSMUSG00000070780Rbm4710082.181ENSMALG00000005167rbm4710082.447Monopterus_albus
ENSMUSG00000070780Rbm47100100.000MGP_CAROLIEiJ_G0027258Rbm47100100.000Mus_caroli
ENSMUSG00000070780Rbm4710099.661MGP_PahariEiJ_G0017040Rbm4710099.661Mus_pahari
ENSMUSG00000070780Rbm47100100.000MGP_SPRETEiJ_G0028253Rbm47100100.000Mus_spretus
ENSMUSG00000070780Rbm4710094.595ENSMPUG00000006177RBM479494.595Mustela_putorius_furo
ENSMUSG00000070780Rbm4710091.772ENSMLUG00000000889RBM4710091.568Myotis_lucifugus
ENSMUSG00000070780Rbm4710094.304ENSNGAG00000003325Rbm4710093.423Nannospalax_galili
ENSMUSG00000070780Rbm4710081.701ENSNBRG00000015092rbm4710080.670Neolamprologus_brichardi
ENSMUSG00000070780Rbm4710093.671ENSNLEG00000017151RBM4710093.445Nomascus_leucogenys
ENSMUSG00000070780Rbm478992.199ENSMEUG00000009516-9986.215Notamacropus_eugenii
ENSMUSG00000070780Rbm478594.628ENSOPRG00000016507-7594.628Ochotona_princeps
ENSMUSG00000070780Rbm4710093.617ENSODEG00000004873RBM4710092.424Octodon_degus
ENSMUSG00000070780Rbm479685.955ENSONIG00000009061rbm4710079.540Oreochromis_niloticus
ENSMUSG00000070780Rbm4710086.477ENSOANG00000008978RBM4710086.978Ornithorhynchus_anatinus
ENSMUSG00000070780Rbm4710093.603ENSOCUG00000012034RBM4710093.098Oryctolagus_cuniculus
ENSMUSG00000070780Rbm4710082.713ENSORLG00000005847rbm4710081.383Oryzias_latipes
ENSMUSG00000070780Rbm4710082.713ENSORLG00020005154rbm4710081.383Oryzias_latipes_hni
ENSMUSG00000070780Rbm4710082.447ENSORLG00015000066rbm4710081.117Oryzias_latipes_hsok
ENSMUSG00000070780Rbm4710082.447ENSOMEG00000010730rbm4710081.383Oryzias_melastigma
ENSMUSG00000070780Rbm4710086.709ENSOGAG00000025193-10086.294Otolemur_garnettii
ENSMUSG00000070780Rbm4710094.932ENSOGAG00000029367-10094.932Otolemur_garnettii
ENSMUSG00000070780Rbm4710088.000ENSOARG00000012711RBM4710086.125Ovis_aries
ENSMUSG00000070780Rbm4710093.671ENSPPAG00000029763RBM4710093.613Pan_paniscus
ENSMUSG00000070780Rbm4710092.405ENSPPRG00000012873RBM4710094.149Panthera_pardus
ENSMUSG00000070780Rbm478591.633ENSPTIG00000017046RBM4710091.633Panthera_tigris_altaica
ENSMUSG00000070780Rbm4710093.782ENSPTRG00000016006RBM4710093.782Pan_troglodytes
ENSMUSG00000070780Rbm4710093.782ENSPANG00000005980RBM4710093.782Papio_anubis
ENSMUSG00000070780Rbm4710077.515ENSPKIG00000013431RBM479879.692Paramormyrops_kingsleyae
ENSMUSG00000070780Rbm478787.591ENSPKIG00000005037rbm4710080.052Paramormyrops_kingsleyae
ENSMUSG00000070780Rbm4710089.241ENSPSIG00000017516RBM479789.623Pelodiscus_sinensis
ENSMUSG00000070780Rbm4710083.245ENSPMGG00000018540rbm4710082.181Periophthalmus_magnuspinnatus
ENSMUSG00000070780Rbm4710098.279ENSPEMG00000011088Rbm4710098.279Peromyscus_maniculatus_bairdii
ENSMUSG00000070780Rbm479684.530ENSPFOG00000007997rbm4710078.228Poecilia_formosa
ENSMUSG00000070780Rbm4710081.013ENSPLAG00000002072rbm4710080.688Poecilia_latipinna
ENSMUSG00000070780Rbm479884.890ENSPMEG00000017492rbm4710081.383Poecilia_mexicana
ENSMUSG00000070780Rbm479884.848ENSPREG00000008456rbm4710080.952Poecilia_reticulata
ENSMUSG00000070780Rbm479882.385ENSPPYG00000014688RBM4710080.405Pongo_abelii
ENSMUSG00000070780Rbm4710094.304ENSPCAG00000011879RBM478195.012Procavia_capensis
ENSMUSG00000070780Rbm4710090.863ENSPCOG00000023451RBM4710091.781Propithecus_coquereli
ENSMUSG00000070780Rbm4710092.929ENSPVAG00000003812RBM4710093.266Pteropus_vampyrus
ENSMUSG00000070780Rbm4710080.928ENSPNYG00000022868rbm4710079.897Pundamilia_nyererei
ENSMUSG00000070780Rbm4710077.059ENSPNAG00000007940rbm4710080.928Pygocentrus_nattereri
ENSMUSG00000070780Rbm4710098.983ENSRNOG00000002408Rbm4710098.983Rattus_norvegicus
ENSMUSG00000070780Rbm4710094.286ENSRBIG00000039601RBM4710093.782Rhinopithecus_bieti
ENSMUSG00000070780Rbm4710094.286ENSRROG00000044696RBM4710093.782Rhinopithecus_roxellana
ENSMUSG00000070780Rbm4710094.304ENSSBOG00000028475RBM4710094.639Saimiri_boliviensis_boliviensis
ENSMUSG00000070780Rbm4710090.957ENSSHAG00000017576RBM4710089.882Sarcophilus_harrisii
ENSMUSG00000070780Rbm4710078.481ENSSFOG00015024101RBM4710072.287Scleropages_formosus
ENSMUSG00000070780Rbm4710073.964ENSSFOG00015012445rbm4710076.658Scleropages_formosus
ENSMUSG00000070780Rbm4710079.744ENSSMAG00000009744rbm4710078.462Scophthalmus_maximus
ENSMUSG00000070780Rbm4710082.979ENSSDUG00000022684rbm4710081.649Seriola_dumerili
ENSMUSG00000070780Rbm4710084.043ENSSLDG00000003109rbm4710082.713Seriola_lalandi_dorsalis
ENSMUSG00000070780Rbm4710092.405ENSSARG00000001735RBM477593.080Sorex_araneus
ENSMUSG00000070780Rbm4710085.930ENSSPUG00000007515RBM4710088.360Sphenodon_punctatus
ENSMUSG00000070780Rbm4710084.309ENSSPAG00000001257rbm4710082.979Stegastes_partitus
ENSMUSG00000070780Rbm4710094.435ENSSSCG00000008796RBM4710093.761Sus_scrofa
ENSMUSG00000070780Rbm4710088.403ENSTGUG00000008705RBM4710088.067Taeniopygia_guttata
ENSMUSG00000070780Rbm4710082.278ENSTRUG00000014050rbm4710081.649Takifugu_rubripes
ENSMUSG00000070780Rbm4710081.491ENSTNIG00000006127rbm4710079.949Tetraodon_nigroviridis
ENSMUSG00000070780Rbm4710093.038ENSTBEG00000001607RBM477694.737Tupaia_belangeri
ENSMUSG00000070780Rbm4710093.570ENSTTRG00000002839RBM4710094.078Tursiops_truncatus
ENSMUSG00000070780Rbm4710094.088ENSUAMG00000021346RBM4710094.257Ursus_americanus
ENSMUSG00000070780Rbm479291.781ENSVPAG00000000641-5792.105Vicugna_pacos
ENSMUSG00000070780Rbm479694.211ENSVVUG00000014774RBM4710092.088Vulpes_vulpes
ENSMUSG00000070780Rbm4710084.317ENSXETG00000012802rbm4710084.317Xenopus_tropicalis
ENSMUSG00000070780Rbm4710081.646ENSXCOG00000000780rbm4710080.688Xiphophorus_couchianus
ENSMUSG00000070780Rbm4710082.447ENSXMAG00000009874rbm4710081.117Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002244hematopoietic progenitor cell differentiation24029230.IMPProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding24916387.IDAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding24916387.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus24916387.IDAComponent
GO:0016554cytidine to uridine editing24916387.IGIProcess

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