EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000070828 (Gene tree)
Gene ID: 665902
Gene Symbol: Zscan4f
Alias: C330039H09Rik
Full Name: zinc finger and SCAN domain containing 4F
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4404 bases
Position: chr7:11397915-11402318
Accession: 3708485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000120149	zf-C2H2	PF00096.26	4.1e-13	1	3
ENSMUSP00000120149	zf-C2H2	PF00096.26	4.1e-13	2	3
ENSMUSP00000120149	zf-C2H2	PF00096.26	4.1e-13	3	3
ENSMUSP00000120149	zf-met	PF12874.7	5.3e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145237	-	1829	-	ENSMUSP00000120149	506 (aa)	-	Q3URS2
ENSMUST00000141491	-	521	-	ENSMUSP00000122083	77 (aa)	-	L7N266

Gene Model

Click here to download ENSMUSG00000070828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000070828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000070828	Zscan4f	100	98.024	ENSMUSG00000109969	Zscan4-ps3	100	98.024
ENSMUSG00000070828	Zscan4f	100	99.407	ENSMUSG00000054272	Zscan4c	100	99.407
ENSMUSG00000070828	Zscan4f	100	94.466	ENSMUSG00000090714	Zscan4d	100	94.466
ENSMUSG00000070828	Zscan4f	100	99.209	ENSMUSG00000110190	Zscan4-ps2	100	99.209

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000070828	Zscan4f	93	43.969	ENSCHIG00000017999	-	94	43.969	Capra_hircus
ENSMUSG00000070828	Zscan4f	98	48.081	ENSRNOG00000059074	LOC691661	96	48.081	Rattus_norvegicus
ENSMUSG00000070828	Zscan4f	99	67.936	ENSRNOG00000028214	Zscan4f	99	67.936	Rattus_norvegicus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000781	chromosome, telomeric region	-	IEA	Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function