EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000071054 (Gene tree)
Gene ID: 224903
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 21470 bases
Position: chr17:56584825-56606294
Accession: 2146974
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000092849	RRM_5	PF13893.6	7.7e-06	1	1
ENSMUSP00000138277	RRM_5	PF13893.6	7.7e-06	1	1
ENSMUSP00000092849	RRM_1	PF00076.22	3.4e-12	1	1
ENSMUSP00000138277	RRM_1	PF00076.22	3.4e-12	1	1
ENSMUSP00000092849	SAP	PF02037.27	2.1e-10	1	1
ENSMUSP00000138277	SAP	PF02037.27	2.1e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000183318	-	423	-	-	- (aa)	-	-
ENSMUST00000182800	-	342	-	ENSMUSP00000138743	44 (aa)	-	S4R2Q5
ENSMUST00000182461	-	703	-	-	- (aa)	-	-
ENSMUST00000182951	-	774	-	ENSMUSP00000138395	169 (aa)	-	S4R1W0
ENSMUST00000182913	-	420	-	-	- (aa)	-	-
ENSMUST00000183041	-	714	-	-	- (aa)	-	-
ENSMUST00000182533	-	3122	XM_006524160	ENSMUSP00000138277	939 (aa)	XP_006524223	S4R1M2
ENSMUST00000182159	-	1998	-	-	- (aa)	-	-
ENSMUST00000182031	-	1755	-	-	- (aa)	-	-
ENSMUST00000182378	-	3628	-	-	- (aa)	-	-
ENSMUST00000095224	-	3106	-	ENSMUSP00000092849	937 (aa)	-	D3YXK2
ENSMUST00000182454	-	1073	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000071054's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000071054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000071054	Safb	100	62.038	ENSMUSG00000042625	Safb2	89	50.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000071054	Safb	100	84.362	ENSG00000160633	SAFB	100	84.362	Homo_sapiens
ENSMUSG00000071054	Safb	100	83.652	ENSAMEG00000012254	SAFB	100	82.590	Ailuropoda_melanoleuca
ENSMUSG00000071054	Safb	94	39.756	ENSACIG00000006247	safb	52	53.782	Amphilophus_citrinellus
ENSMUSG00000071054	Safb	93	42.686	ENSAOCG00000006308	safb	67	40.952	Amphiprion_ocellaris
ENSMUSG00000071054	Safb	94	61.348	ENSAPLG00000005780	-	100	60.112	Anas_platyrhynchos
ENSMUSG00000071054	Safb	90	59.212	ENSAPLG00000006355	-	65	55.633	Anas_platyrhynchos
ENSMUSG00000071054	Safb	100	83.723	ENSANAG00000028821	SAFB	100	83.723	Aotus_nancymaae
ENSMUSG00000071054	Safb	70	59.836	ENSACLG00000001926	safb	52	59.350	Astatotilapia_calliptera
ENSMUSG00000071054	Safb	100	80.213	ENSBTAG00000007875	SAFB	100	80.213	Bos_taurus
ENSMUSG00000071054	Safb	82	85.638	ENSCJAG00000017081	SAFB	100	90.149	Callithrix_jacchus
ENSMUSG00000071054	Safb	100	84.968	ENSCAFG00000018803	SAFB	87	84.968	Canis_familiaris
ENSMUSG00000071054	Safb	100	84.968	ENSCAFG00020018943	SAFB	100	84.968	Canis_lupus_dingo
ENSMUSG00000071054	Safb	100	79.787	ENSCHIG00000007262	SAFB	100	79.787	Capra_hircus
ENSMUSG00000071054	Safb	57	75.752	ENSTSYG00000001851	-	53	86.667	Carlito_syrichta
ENSMUSG00000071054	Safb	93	81.407	ENSCAPG00000012121	SAFB	100	81.407	Cavia_aperea
ENSMUSG00000071054	Safb	100	85.307	ENSCPOG00000026322	SAFB	100	85.307	Cavia_porcellus
ENSMUSG00000071054	Safb	100	84.060	ENSCCAG00000020193	SAFB	100	83.634	Cebus_capucinus
ENSMUSG00000071054	Safb	100	84.255	ENSCATG00000029994	SAFB	100	84.255	Cercocebus_atys
ENSMUSG00000071054	Safb	100	84.501	ENSCLAG00000007734	SAFB	100	85.987	Chinchilla_lanigera
ENSMUSG00000071054	Safb	100	84.149	ENSCSAG00000009949	SAFB	100	84.149	Chlorocebus_sabaeus
ENSMUSG00000071054	Safb	87	95.238	ENSCHOG00000003208	SAFB	93	95.238	Choloepus_hoffmanni
ENSMUSG00000071054	Safb	91	57.332	ENSCPBG00000010936	-	63	54.003	Chrysemys_picta_bellii
ENSMUSG00000071054	Safb	92	60.596	ENSCPBG00000010928	-	99	59.450	Chrysemys_picta_bellii
ENSMUSG00000071054	Safb	100	79.104	ENSCANG00000019754	-	100	79.104	Colobus_angolensis_palliatus
ENSMUSG00000071054	Safb	96	93.035	ENSCANG00000004774	-	99	93.035	Colobus_angolensis_palliatus
ENSMUSG00000071054	Safb	100	95.421	ENSCGRG00001002254	Safb	100	94.888	Cricetulus_griseus_chok1gshd
ENSMUSG00000071054	Safb	90	92.571	ENSCGRG00000011529	Safb	96	92.000	Cricetulus_griseus_crigri
ENSMUSG00000071054	Safb	75	46.004	ENSCSEG00000019870	safb	65	39.052	Cynoglossus_semilaevis
ENSMUSG00000071054	Safb	71	50.694	ENSCVAG00000002226	safb	50	55.372	Cyprinodon_variegatus
ENSMUSG00000071054	Safb	91	42.369	ENSDARG00000020467	safb	60	62.500	Danio_rerio
ENSMUSG00000071054	Safb	100	82.040	ENSDNOG00000015746	SAFB	95	80.236	Dasypus_novemcinctus
ENSMUSG00000071054	Safb	100	80.485	ENSDORG00000016200	Safb	100	79.895	Dipodomys_ordii
ENSMUSG00000071054	Safb	74	85.507	ENSETEG00000018679	SAFB	85	85.507	Echinops_telfairi
ENSMUSG00000071054	Safb	100	82.540	ENSEASG00005023019	SAFB	100	81.587	Equus_asinus_asinus
ENSMUSG00000071054	Safb	100	84.239	ENSECAG00000018659	SAFB	89	84.026	Equus_caballus
ENSMUSG00000071054	Safb	96	40.276	ENSELUG00000022327	safb	57	58.065	Esox_lucius
ENSMUSG00000071054	Safb	100	84.878	ENSFCAG00000011835	SAFB	100	84.878	Felis_catus
ENSMUSG00000071054	Safb	100	62.120	ENSFALG00000013882	-	92	60.358	Ficedula_albicollis
ENSMUSG00000071054	Safb	91	54.696	ENSFALG00000013881	-	64	53.925	Ficedula_albicollis
ENSMUSG00000071054	Safb	100	78.500	ENSFDAG00000020306	SAFB	99	82.418	Fukomys_damarensis
ENSMUSG00000071054	Safb	100	61.870	ENSGALG00000013365	-	100	60.947	Gallus_gallus
ENSMUSG00000071054	Safb	71	57.544	ENSGAGG00000017702	-	94	58.242	Gopherus_agassizii
ENSMUSG00000071054	Safb	96	59.368	ENSGAGG00000008424	-	67	56.143	Gopherus_agassizii
ENSMUSG00000071054	Safb	100	84.149	ENSGGOG00000015109	SAFB	100	84.149	Gorilla_gorilla
ENSMUSG00000071054	Safb	97	37.097	ENSHBUG00000009218	safb	52	51.667	Haplochromis_burtoni
ENSMUSG00000071054	Safb	100	86.873	ENSHGLG00000015883	SAFB	100	86.873	Heterocephalus_glaber_female
ENSMUSG00000071054	Safb	100	91.133	ENSHGLG00100004228	SAFB	100	90.338	Heterocephalus_glaber_male
ENSMUSG00000071054	Safb	55	52.612	ENSIPUG00000024869	safb2	63	44.861	Ictalurus_punctatus
ENSMUSG00000071054	Safb	93	87.185	ENSSTOG00000002783	SAFB	100	87.071	Ictidomys_tridecemlineatus
ENSMUSG00000071054	Safb	100	88.055	ENSJJAG00000009021	Safb	100	87.949	Jaculus_jaculus
ENSMUSG00000071054	Safb	66	47.161	ENSLACG00000018090	SAFB	66	48.125	Latimeria_chalumnae
ENSMUSG00000071054	Safb	97	45.312	ENSLOCG00000003613	safb	74	44.697	Lepisosteus_oculatus
ENSMUSG00000071054	Safb	99	81.750	ENSLAFG00000003840	SAFB	100	80.896	Loxodonta_africana
ENSMUSG00000071054	Safb	100	84.166	ENSMFAG00000003885	SAFB	100	83.741	Macaca_fascicularis
ENSMUSG00000071054	Safb	100	84.255	ENSMMUG00000017970	SAFB	100	84.255	Macaca_mulatta
ENSMUSG00000071054	Safb	100	80.765	ENSMNEG00000035637	SAFB	100	79.766	Macaca_nemestrina
ENSMUSG00000071054	Safb	100	79.025	ENSMLEG00000038637	SAFB	100	77.463	Mandrillus_leucophaeus
ENSMUSG00000071054	Safb	89	42.165	ENSMZEG00005009120	safb	52	59.350	Maylandia_zebra
ENSMUSG00000071054	Safb	97	60.217	ENSMGAG00000001101	-	100	59.457	Meleagris_gallopavo
ENSMUSG00000071054	Safb	89	56.206	ENSMGAG00000001051	-	100	57.210	Meleagris_gallopavo
ENSMUSG00000071054	Safb	52	97.325	ENSMAUG00000005013	Safb	100	97.325	Mesocricetus_auratus
ENSMUSG00000071054	Safb	100	80.978	ENSMICG00000008739	-	100	80.234	Microcebus_murinus
ENSMUSG00000071054	Safb	85	69.489	ENSMICG00000046795	-	98	85.106	Microcebus_murinus
ENSMUSG00000071054	Safb	100	94.894	ENSMOCG00000014040	Safb	100	94.362	Microtus_ochrogaster
ENSMUSG00000071054	Safb	100	68.951	ENSMODG00000001236	SAFB	100	69.263	Monodelphis_domestica
ENSMUSG00000071054	Safb	93	40.416	ENSMALG00000020330	safb	68	39.843	Monopterus_albus
ENSMUSG00000071054	Safb	100	99.361	MGP_CAROLIEiJ_G0021780	Safb	100	99.361	Mus_caroli
ENSMUSG00000071054	Safb	100	98.617	MGP_PahariEiJ_G0020769	Safb	100	98.617	Mus_pahari
ENSMUSG00000071054	Safb	100	84.574	ENSMPUG00000006123	SAFB	94	84.574	Mustela_putorius_furo
ENSMUSG00000071054	Safb	100	83.617	ENSMLUG00000001081	SAFB	100	83.617	Myotis_lucifugus
ENSMUSG00000071054	Safb	100	87.460	ENSNGAG00000019882	Safb	100	87.460	Nannospalax_galili
ENSMUSG00000071054	Safb	96	84.257	ENSNLEG00000013551	SAFB	100	84.146	Nomascus_leucogenys
ENSMUSG00000071054	Safb	89	78.177	ENSOPRG00000011561	-	100	78.897	Ochotona_princeps
ENSMUSG00000071054	Safb	100	87.049	ENSODEG00000014838	SAFB	100	87.049	Octodon_degus
ENSMUSG00000071054	Safb	91	75.733	ENSOCUG00000014628	SAFB	63	76.190	Oryctolagus_cuniculus
ENSMUSG00000071054	Safb	100	79.365	ENSOGAG00000027769	SAFB	100	78.624	Otolemur_garnettii
ENSMUSG00000071054	Safb	100	76.915	ENSOARG00000007662	-	100	75.000	Ovis_aries
ENSMUSG00000071054	Safb	79	72.999	ENSOARG00000007856	-	100	72.727	Ovis_aries
ENSMUSG00000071054	Safb	100	84.166	ENSPPAG00000035129	SAFB	100	83.741	Pan_paniscus
ENSMUSG00000071054	Safb	100	84.878	ENSPPRG00000017197	SAFB	100	84.878	Panthera_pardus
ENSMUSG00000071054	Safb	100	84.166	ENSPTRG00000010335	SAFB	100	83.741	Pan_troglodytes
ENSMUSG00000071054	Safb	100	84.060	ENSPANG00000007770	SAFB	100	83.634	Papio_anubis
ENSMUSG00000071054	Safb	99	58.230	ENSPSIG00000009367	-	63	55.627	Pelodiscus_sinensis
ENSMUSG00000071054	Safb	100	58.642	ENSPSIG00000011679	-	64	56.826	Pelodiscus_sinensis
ENSMUSG00000071054	Safb	100	95.421	ENSPEMG00000020428	Safb	100	94.888	Peromyscus_maniculatus_bairdii
ENSMUSG00000071054	Safb	57	78.598	ENSPCIG00000009504	-	100	78.967	Phascolarctos_cinereus
ENSMUSG00000071054	Safb	100	84.542	ENSPPYG00000009428	SAFB	100	84.542	Pongo_abelii
ENSMUSG00000071054	Safb	100	78.252	ENSPCAG00000006475	SAFB	100	78.145	Procavia_capensis
ENSMUSG00000071054	Safb	100	76.907	ENSPCOG00000014090	SAFB	100	76.165	Propithecus_coquereli
ENSMUSG00000071054	Safb	100	77.103	ENSPVAG00000004913	SAFB	100	77.423	Pteropus_vampyrus
ENSMUSG00000071054	Safb	100	96.596	ENSRNOG00000050543	Safb	100	96.596	Rattus_norvegicus
ENSMUSG00000071054	Safb	96	79.104	ENSRBIG00000042509	SAFB	100	75.177	Rhinopithecus_bieti
ENSMUSG00000071054	Safb	100	84.166	ENSRROG00000029278	SAFB	100	83.741	Rhinopithecus_roxellana
ENSMUSG00000071054	Safb	100	84.149	ENSSBOG00000026291	SAFB	100	84.149	Saimiri_boliviensis_boliviensis
ENSMUSG00000071054	Safb	94	40.713	ENSSMAG00000009316	safb	64	42.654	Scophthalmus_maximus
ENSMUSG00000071054	Safb	93	78.449	ENSSARG00000010475	SAFB	100	78.107	Sorex_araneus
ENSMUSG00000071054	Safb	59	50.361	ENSSPUG00000009747	-	67	49.545	Sphenodon_punctatus
ENSMUSG00000071054	Safb	54	49.071	ENSSPUG00000009820	-	64	50.462	Sphenodon_punctatus
ENSMUSG00000071054	Safb	100	83.667	ENSSSCG00000013522	SAFB	99	83.375	Sus_scrofa
ENSMUSG00000071054	Safb	96	60.960	ENSTGUG00000000502	-	97	60.449	Taeniopygia_guttata
ENSMUSG00000071054	Safb	75	85.606	ENSTBEG00000013124	-	74	88.636	Tupaia_belangeri
ENSMUSG00000071054	Safb	92	92.063	ENSTTRG00000013588	SAFB	92	92.063	Tursiops_truncatus
ENSMUSG00000071054	Safb	78	84.218	ENSUAMG00000024543	SAFB	99	84.332	Ursus_americanus
ENSMUSG00000071054	Safb	83	91.489	ENSUMAG00000009734	SAFB	88	91.489	Ursus_maritimus
ENSMUSG00000071054	Safb	71	92.188	ENSVPAG00000012043	SAFB	78	92.188	Vicugna_pacos
ENSMUSG00000071054	Safb	100	84.787	ENSVVUG00000013720	SAFB	87	84.787	Vulpes_vulpes
ENSMUSG00000071054	Safb	67	47.302	ENSXETG00000008755	safb	64	70.455	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	19403048.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	19403048.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	17931718.19403048.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0030520	intracellular estrogen receptor signaling pathway	21873635.	IBA	Process
GO:0030520	intracellular estrogen receptor signaling pathway	15798188.	IMP	Process
GO:0040008	regulation of growth	15798188.	IMP	Process
GO:0042445	hormone metabolic process	15798188.	IMP	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	19403048.	IMP	Process
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process
GO:0050684	regulation of mRNA processing	-	ISO	Process