EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000155824	-	2853	-	-	- (aa)	-	-
ENSMUST00000213200	-	1450	-	ENSMUSP00000150020	156 (aa)	-	A0A1L1SST0
ENSMUST00000090749	-	746	-	ENSMUSP00000149662	40 (aa)	-	A0A1L1SRX5
ENSMUST00000137829	-	677	-	-	- (aa)	-	-
ENSMUST00000132846	-	1170	-	ENSMUSP00000117987	164 (aa)	-	P17742
ENSMUST00000135789	-	355	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04217	Necroptosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000071866	Ppia	100	96.341	ENSG00000196262	PPIA	99	98.077	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000413	protein peptidyl-prolyl isomerization	-	ISO	Process
GO:0003755	peptidyl-prolyl cis-trans isomerase activity	21873635.	IBA	Function
GO:0003755	peptidyl-prolyl cis-trans isomerase activity	-	ISO	Function
GO:0005515	protein binding	16352598.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005615	extracellular space	24006456.	HDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006457	protein folding	-	IEA	Process
GO:0016018	cyclosporin A binding	21873635.	IBA	Function
GO:0016018	cyclosporin A binding	-	ISO	Function
GO:0016853	isomerase activity	-	IEA	Function
GO:0030182	neuron differentiation	16352598.	IMP	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0034389	lipid droplet organization	-	ISO	Process
GO:0042026	protein refolding	21873635.	IBA	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045069	regulation of viral genome replication	-	ISO	Process
GO:0045070	positive regulation of viral genome replication	-	ISO	Process
GO:0050714	positive regulation of protein secretion	-	ISO	Process
GO:0051082	unfolded protein binding	21873635.	IBA	Function