EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000072889 (Gene tree)
Gene ID: 100978
Gene Symbol: Nfxl1
Alias: 1700012H24Rik|D430033A06Rik|LOC381696|TCF9
Full Name: nuclear transcription factor%2C X-box binding-like 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 46384
Position: chr5: 72513301-72559684
Accession: 1923646
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000146761	-	798	-	-	- (aa)	-	-
ENSMUST00000153882	-	800	-	-	- (aa)	-	-
ENSMUST00000134452	-	884	-	-	- (aa)	-	-
ENSMUST00000149393	-	1193	-	-	- (aa)	-	-
ENSMUST00000087216	-	3712	XM_011240686	ENSMUSP00000084467	918 (aa)	XP_011238988	E9Q8I7
ENSMUST00000135318	-	3579	-	ENSMUSP00000114355	500 (aa)	-	E9PZN0
ENSMUST00000074948	-	1373	-	ENSMUSP00000074481	346 (aa)	-	E9Q3K1
ENSMUST00000198977	-	4172	-	-	- (aa)	-	-
ENSMUST00000149340	-	416	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000072889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000072889's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000072889	Nfxl1	100	89.107	ENSG00000170448	NFXL1	100	88.562	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component