EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000073460 (Gene tree)
Gene ID: 240023
Gene Symbol: Pnldc1
Alias: LOC240023
Full Name: poly(A)-specific ribonuclease (PARN)-like domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 21502 bases
Position: chr17:12888729-12910230
Accession: 2685159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000129377	CAF1	PF04857.20	2.8e-78	1	1
ENSMUSP00000156864	CAF1	PF04857.20	4.7e-40	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000233189	-	522	-	ENSMUSP00000156846	25 (aa)	-	-
ENSMUST00000233098	-	432	-	ENSMUSP00000156408	34 (aa)	-	-
ENSMUST00000233711	-	414	-	-	- (aa)	-	-
ENSMUST00000163394	-	2092	XM_006523325	ENSMUSP00000129377	531 (aa)	XP_006523388	B2RXZ1
ENSMUST00000233474	-	2004	XM_006523328	ENSMUSP00000156494	315 (aa)	XP_006523391	UPI0005AB95A1
ENSMUST00000233548	-	1666	-	ENSMUSP00000156659	261 (aa)	-	-
ENSMUST00000232982	-	620	-	ENSMUSP00000156864	206 (aa)	-	-

Gene Model

Click here to download ENSMUSG00000073460's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000073460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000073460	Pnldc1	97	31.077	ENSMUSG00000022685	Parn	96	32.178

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000073460	Pnldc1	66	36.496	ENSG00000140694	PARN	58	30.147	Homo_sapiens
ENSMUSG00000073460	Pnldc1	100	88.571	ENSG00000146453	PNLDC1	99	85.985	Homo_sapiens
ENSMUSG00000073460	Pnldc1	100	88.571	ENSAMEG00000015371	PNLDC1	99	86.200	Ailuropoda_melanoleuca
ENSMUSG00000073460	Pnldc1	97	30.723	ENSAMEG00000011208	PARN	51	30.723	Ailuropoda_melanoleuca
ENSMUSG00000073460	Pnldc1	77	30.258	ENSAPEG00000010661	parn	50	30.258	Amphiprion_percula
ENSMUSG00000073460	Pnldc1	95	58.869	ENSAPLG00000007014	PNLDC1	98	58.869	Anas_platyrhynchos
ENSMUSG00000073460	Pnldc1	99	62.540	ENSACAG00000013667	PNLDC1	99	59.659	Anolis_carolinensis
ENSMUSG00000073460	Pnldc1	97	31.832	ENSACAG00000004973	PARN	50	32.132	Anolis_carolinensis
ENSMUSG00000073460	Pnldc1	59	41.071	ENSANAG00000023815	-	70	41.071	Aotus_nancymaae
ENSMUSG00000073460	Pnldc1	100	88.889	ENSANAG00000034713	PNLDC1	100	86.693	Aotus_nancymaae
ENSMUSG00000073460	Pnldc1	97	30.120	ENSAMXG00000012390	parn	51	30.120	Astyanax_mexicanus
ENSMUSG00000073460	Pnldc1	95	86.879	ENSBTAG00000015166	PNLDC1	95	86.879	Bos_taurus
ENSMUSG00000073460	Pnldc1	100	86.984	ENSCJAG00000011865	PNLDC1	100	84.369	Callithrix_jacchus
ENSMUSG00000073460	Pnldc1	100	91.571	ENSCAFG00000000740	PNLDC1	100	87.947	Canis_familiaris
ENSMUSG00000073460	Pnldc1	97	30.931	ENSCAFG00000018795	PARN	51	30.931	Canis_familiaris
ENSMUSG00000073460	Pnldc1	100	91.571	ENSCAFG00020017742	PNLDC1	100	85.553	Canis_lupus_dingo
ENSMUSG00000073460	Pnldc1	97	30.931	ENSCAFG00020024126	PARN	51	30.931	Canis_lupus_dingo
ENSMUSG00000073460	Pnldc1	100	89.841	ENSCHIG00000003141	PNLDC1	100	84.053	Capra_hircus
ENSMUSG00000073460	Pnldc1	100	86.032	ENSTSYG00000005606	PNLDC1	100	83.239	Carlito_syrichta
ENSMUSG00000073460	Pnldc1	61	41.071	ENSTSYG00000011320	TOE1	76	41.071	Carlito_syrichta
ENSMUSG00000073460	Pnldc1	100	63.158	ENSCAPG00000011893	PNLDC1	100	63.158	Cavia_aperea
ENSMUSG00000073460	Pnldc1	100	83.142	ENSCPOG00000019565	PNLDC1	100	80.451	Cavia_porcellus
ENSMUSG00000073460	Pnldc1	100	88.571	ENSCCAG00000026232	PNLDC1	100	85.687	Cebus_capucinus
ENSMUSG00000073460	Pnldc1	59	41.071	ENSCCAG00000030245	TOE1	70	41.071	Cebus_capucinus
ENSMUSG00000073460	Pnldc1	66	36.496	ENSCATG00000041368	PARN	58	30.120	Cercocebus_atys
ENSMUSG00000073460	Pnldc1	100	89.524	ENSCATG00000033196	PNLDC1	100	85.876	Cercocebus_atys
ENSMUSG00000073460	Pnldc1	100	88.254	ENSCLAG00000003228	PNLDC1	99	85.985	Chinchilla_lanigera
ENSMUSG00000073460	Pnldc1	92	89.003	ENSCSAG00000012478	PNLDC1	98	84.676	Chlorocebus_sabaeus
ENSMUSG00000073460	Pnldc1	99	66.349	ENSCPBG00000004050	PNLDC1	100	65.625	Chrysemys_picta_bellii
ENSMUSG00000073460	Pnldc1	92	89.655	ENSCANG00000043076	PNLDC1	97	85.573	Colobus_angolensis_palliatus
ENSMUSG00000073460	Pnldc1	97	30.769	ENSCGRG00001012096	Parn	51	31.902	Cricetulus_griseus_chok1gshd
ENSMUSG00000073460	Pnldc1	100	70.794	ENSCGRG00001011981	-	99	69.303	Cricetulus_griseus_chok1gshd
ENSMUSG00000073460	Pnldc1	100	88.123	ENSCGRG00001007470	-	99	86.064	Cricetulus_griseus_chok1gshd
ENSMUSG00000073460	Pnldc1	100	74.921	ENSCGRG00000003103	-	99	71.751	Cricetulus_griseus_crigri
ENSMUSG00000073460	Pnldc1	100	88.123	ENSCGRG00000010221	-	99	86.064	Cricetulus_griseus_crigri
ENSMUSG00000073460	Pnldc1	97	30.769	ENSCGRG00000004939	Parn	51	31.902	Cricetulus_griseus_crigri
ENSMUSG00000073460	Pnldc1	66	34.307	ENSDARG00000102634	parn	77	34.286	Danio_rerio
ENSMUSG00000073460	Pnldc1	100	86.392	ENSDNOG00000013709	PNLDC1	100	85.338	Dasypus_novemcinctus
ENSMUSG00000073460	Pnldc1	99	88.498	ENSDORG00000011517	Pnldc1	99	88.498	Dipodomys_ordii
ENSMUSG00000073460	Pnldc1	66	31.111	ENSDORG00000027812	-	59	31.111	Dipodomys_ordii
ENSMUSG00000073460	Pnldc1	94	81.224	ENSETEG00000007587	PNLDC1	99	76.113	Echinops_telfairi
ENSMUSG00000073460	Pnldc1	99	32.188	ENSEBUG00000008118	PNLDC1	97	30.246	Eptatretus_burgeri
ENSMUSG00000073460	Pnldc1	100	90.038	ENSEASG00005019029	PNLDC1	100	79.259	Equus_asinus_asinus
ENSMUSG00000073460	Pnldc1	100	90.038	ENSECAG00000012898	PNLDC1	100	87.006	Equus_caballus
ENSMUSG00000073460	Pnldc1	70	83.258	ENSEEUG00000005717	-	86	75.000	Erinaceus_europaeus
ENSMUSG00000073460	Pnldc1	100	90.805	ENSFCAG00000002848	PNLDC1	100	87.759	Felis_catus
ENSMUSG00000073460	Pnldc1	66	36.496	ENSFALG00000003911	PARN	50	30.247	Ficedula_albicollis
ENSMUSG00000073460	Pnldc1	94	57.654	ENSFALG00000012081	PNLDC1	99	57.654	Ficedula_albicollis
ENSMUSG00000073460	Pnldc1	100	89.206	ENSFDAG00000021334	PNLDC1	100	86.441	Fukomys_damarensis
ENSMUSG00000073460	Pnldc1	99	59.365	ENSGALG00000011624	PNLDC1	82	59.857	Gallus_gallus
ENSMUSG00000073460	Pnldc1	99	66.667	ENSGAGG00000015276	PNLDC1	100	67.149	Gopherus_agassizii
ENSMUSG00000073460	Pnldc1	100	88.571	ENSGGOG00000014077	PNLDC1	100	85.499	Gorilla_gorilla
ENSMUSG00000073460	Pnldc1	100	89.524	ENSHGLG00000006889	PNLDC1	100	87.006	Heterocephalus_glaber_female
ENSMUSG00000073460	Pnldc1	100	89.524	ENSHGLG00100018275	PNLDC1	100	87.006	Heterocephalus_glaber_male
ENSMUSG00000073460	Pnldc1	95	30.124	ENSHCOG00000008683	parn	54	30.124	Hippocampus_comes
ENSMUSG00000073460	Pnldc1	97	30.422	ENSSTOG00000007519	PARN	51	30.422	Ictidomys_tridecemlineatus
ENSMUSG00000073460	Pnldc1	100	90.159	ENSSTOG00000005595	PNLDC1	99	89.205	Ictidomys_tridecemlineatus
ENSMUSG00000073460	Pnldc1	100	88.889	ENSJJAG00000009937	Pnldc1	99	83.365	Jaculus_jaculus
ENSMUSG00000073460	Pnldc1	95	30.061	ENSLACG00000004207	PARN	76	30.061	Latimeria_chalumnae
ENSMUSG00000073460	Pnldc1	100	85.714	ENSLAFG00000030189	PNLDC1	92	85.714	Loxodonta_africana
ENSMUSG00000073460	Pnldc1	100	89.524	ENSMFAG00000041296	PNLDC1	100	85.876	Macaca_fascicularis
ENSMUSG00000073460	Pnldc1	100	89.524	ENSMMUG00000004181	PNLDC1	100	85.876	Macaca_mulatta
ENSMUSG00000073460	Pnldc1	100	89.206	ENSMNEG00000034271	PNLDC1	100	85.687	Macaca_nemestrina
ENSMUSG00000073460	Pnldc1	66	36.496	ENSMLEG00000031743	PARN	51	30.120	Mandrillus_leucophaeus
ENSMUSG00000073460	Pnldc1	100	89.841	ENSMLEG00000044059	PNLDC1	100	82.674	Mandrillus_leucophaeus
ENSMUSG00000073460	Pnldc1	95	58.498	ENSMGAG00000012470	PNLDC1	97	58.498	Meleagris_gallopavo
ENSMUSG00000073460	Pnldc1	99	68.927	ENSMAUG00000012298	Pnldc1	100	68.927	Mesocricetus_auratus
ENSMUSG00000073460	Pnldc1	66	36.496	ENSMICG00000016053	PARN	51	31.024	Microcebus_murinus
ENSMUSG00000073460	Pnldc1	100	87.937	ENSMICG00000008021	PNLDC1	100	85.876	Microcebus_murinus
ENSMUSG00000073460	Pnldc1	100	96.552	ENSMOCG00000014287	Pnldc1	100	93.433	Microtus_ochrogaster
ENSMUSG00000073460	Pnldc1	97	30.769	ENSMOCG00000022211	Parn	66	31.902	Microtus_ochrogaster
ENSMUSG00000073460	Pnldc1	100	75.238	ENSMODG00000007420	PNLDC1	99	76.091	Monodelphis_domestica
ENSMUSG00000073460	Pnldc1	97	30.030	ENSMODG00000004915	PARN	66	30.030	Monodelphis_domestica
ENSMUSG00000073460	Pnldc1	100	98.467	MGP_CAROLIEiJ_G0021045	Pnldc1	100	98.305	Mus_caroli
ENSMUSG00000073460	Pnldc1	97	31.077	MGP_CAROLIEiJ_G0020466	Parn	51	32.209	Mus_caroli
ENSMUSG00000073460	Pnldc1	100	97.701	MGP_PahariEiJ_G0023361	Pnldc1	100	96.610	Mus_pahari
ENSMUSG00000073460	Pnldc1	97	30.462	MGP_PahariEiJ_G0016172	Parn	51	31.595	Mus_pahari
ENSMUSG00000073460	Pnldc1	97	31.077	MGP_SPRETEiJ_G0021361	Parn	51	32.209	Mus_spretus
ENSMUSG00000073460	Pnldc1	100	98.305	MGP_SPRETEiJ_G0021975	Pnldc1	100	98.305	Mus_spretus
ENSMUSG00000073460	Pnldc1	100	90.476	ENSMPUG00000004920	PNLDC1	99	87.524	Mustela_putorius_furo
ENSMUSG00000073460	Pnldc1	97	30.723	ENSMPUG00000014464	PARN	51	30.723	Mustela_putorius_furo
ENSMUSG00000073460	Pnldc1	97	30.514	ENSMLUG00000005414	PARN	66	30.514	Myotis_lucifugus
ENSMUSG00000073460	Pnldc1	100	87.937	ENSMLUG00000000747	PNLDC1	100	86.064	Myotis_lucifugus
ENSMUSG00000073460	Pnldc1	100	95.556	ENSNGAG00000017714	Pnldc1	99	94.162	Nannospalax_galili
ENSMUSG00000073460	Pnldc1	66	31.111	ENSNGAG00000024082	-	63	30.070	Nannospalax_galili
ENSMUSG00000073460	Pnldc1	95	85.667	ENSNLEG00000011282	PNLDC1	99	83.527	Nomascus_leucogenys
ENSMUSG00000073460	Pnldc1	60	62.813	ENSMEUG00000011926	-	64	62.813	Notamacropus_eugenii
ENSMUSG00000073460	Pnldc1	74	61.207	ENSMEUG00000014042	-	100	65.625	Notamacropus_eugenii
ENSMUSG00000073460	Pnldc1	79	86.364	ENSOPRG00000003813	PNLDC1	79	86.364	Ochotona_princeps
ENSMUSG00000073460	Pnldc1	100	88.889	ENSODEG00000008047	PNLDC1	100	87.006	Octodon_degus
ENSMUSG00000073460	Pnldc1	60	30.978	ENSOANG00000029996	-	87	30.851	Ornithorhynchus_anatinus
ENSMUSG00000073460	Pnldc1	100	62.975	ENSOANG00000012199	PNLDC1	99	58.979	Ornithorhynchus_anatinus
ENSMUSG00000073460	Pnldc1	95	30.982	ENSOCUG00000000322	PARN	50	30.982	Oryctolagus_cuniculus
ENSMUSG00000073460	Pnldc1	100	88.889	ENSOCUG00000013867	PNLDC1	100	87.006	Oryctolagus_cuniculus
ENSMUSG00000073460	Pnldc1	66	30.370	ENSORLG00000024893	-	62	30.282	Oryzias_latipes
ENSMUSG00000073460	Pnldc1	66	35.036	ENSOMEG00000019555	parn	61	30.986	Oryzias_melastigma
ENSMUSG00000073460	Pnldc1	100	90.476	ENSOGAG00000007331	PNLDC1	99	87.121	Otolemur_garnettii
ENSMUSG00000073460	Pnldc1	97	31.024	ENSOGAG00000014626	PARN	66	31.818	Otolemur_garnettii
ENSMUSG00000073460	Pnldc1	100	89.524	ENSOARG00000004585	PNLDC1	100	84.181	Ovis_aries
ENSMUSG00000073460	Pnldc1	100	88.571	ENSPPAG00000026651	PNLDC1	100	85.311	Pan_paniscus
ENSMUSG00000073460	Pnldc1	100	91.111	ENSPPRG00000012854	PNLDC1	100	87.759	Panthera_pardus
ENSMUSG00000073460	Pnldc1	99	86.538	ENSPTIG00000011501	PNLDC1	99	82.576	Panthera_tigris_altaica
ENSMUSG00000073460	Pnldc1	100	88.571	ENSPTRG00000018762	PNLDC1	100	85.311	Pan_troglodytes
ENSMUSG00000073460	Pnldc1	100	89.841	ENSPANG00000022009	PNLDC1	100	86.064	Papio_anubis
ENSMUSG00000073460	Pnldc1	97	31.928	ENSPSIG00000014804	PARN	51	32.229	Pelodiscus_sinensis
ENSMUSG00000073460	Pnldc1	63	41.071	ENSPSIG00000010299	TOE1	69	41.071	Pelodiscus_sinensis
ENSMUSG00000073460	Pnldc1	89	62.821	ENSPSIG00000011419	PNLDC1	86	64.479	Pelodiscus_sinensis
ENSMUSG00000073460	Pnldc1	100	96.190	ENSPEMG00000016301	Pnldc1	99	95.104	Peromyscus_maniculatus_bairdii
ENSMUSG00000073460	Pnldc1	97	31.563	ENSPMAG00000003956	parn	62	32.153	Petromyzon_marinus
ENSMUSG00000073460	Pnldc1	83	77.904	ENSPCIG00000023412	PNLDC1	100	77.904	Phascolarctos_cinereus
ENSMUSG00000073460	Pnldc1	99	87.580	ENSPPYG00000017148	PNLDC1	100	80.827	Pongo_abelii
ENSMUSG00000073460	Pnldc1	100	84.127	ENSPCAG00000014169	PNLDC1	99	77.505	Procavia_capensis
ENSMUSG00000073460	Pnldc1	100	89.206	ENSPCOG00000025722	PNLDC1	100	86.441	Propithecus_coquereli
ENSMUSG00000073460	Pnldc1	95	31.173	ENSPVAG00000002547	PARN	50	31.173	Pteropus_vampyrus
ENSMUSG00000073460	Pnldc1	100	90.794	ENSPVAG00000005325	PNLDC1	73	90.390	Pteropus_vampyrus
ENSMUSG00000073460	Pnldc1	100	97.778	ENSRNOG00000023140	Pnldc1	100	97.175	Rattus_norvegicus
ENSMUSG00000073460	Pnldc1	97	31.385	ENSRNOG00000002912	Parn	79	40.741	Rattus_norvegicus
ENSMUSG00000073460	Pnldc1	100	89.524	ENSRBIG00000033806	PNLDC1	100	86.064	Rhinopithecus_bieti
ENSMUSG00000073460	Pnldc1	92	90.000	ENSRROG00000043919	PNLDC1	97	85.968	Rhinopithecus_roxellana
ENSMUSG00000073460	Pnldc1	100	88.889	ENSSBOG00000019135	PNLDC1	100	85.876	Saimiri_boliviensis_boliviensis
ENSMUSG00000073460	Pnldc1	59	41.071	ENSSBOG00000026044	-	70	41.071	Saimiri_boliviensis_boliviensis
ENSMUSG00000073460	Pnldc1	100	76.508	ENSSHAG00000015192	PNLDC1	97	76.923	Sarcophilus_harrisii
ENSMUSG00000073460	Pnldc1	95	30.154	ENSSHAG00000008493	PARN	72	30.154	Sarcophilus_harrisii
ENSMUSG00000073460	Pnldc1	90	65.734	ENSSPUG00000004627	PNLDC1	100	64.602	Sphenodon_punctatus
ENSMUSG00000073460	Pnldc1	66	37.226	ENSSPUG00000007719	PARN	51	30.514	Sphenodon_punctatus
ENSMUSG00000073460	Pnldc1	93	88.776	ENSSSCG00000004046	PNLDC1	99	84.314	Sus_scrofa
ENSMUSG00000073460	Pnldc1	91	58.763	ENSTGUG00000011418	PNLDC1	99	58.763	Taeniopygia_guttata
ENSMUSG00000073460	Pnldc1	66	36.957	ENSTGUG00000004971	PARN	50	30.462	Taeniopygia_guttata
ENSMUSG00000073460	Pnldc1	96	74.706	ENSTBEG00000009131	PNLDC1	98	74.706	Tupaia_belangeri
ENSMUSG00000073460	Pnldc1	100	88.506	ENSTTRG00000010409	PNLDC1	73	83.161	Tursiops_truncatus
ENSMUSG00000073460	Pnldc1	95	30.247	ENSTTRG00000002843	PARN	51	30.247	Tursiops_truncatus
ENSMUSG00000073460	Pnldc1	99	76.415	ENSUAMG00000015783	PNLDC1	99	73.985	Ursus_americanus
ENSMUSG00000073460	Pnldc1	70	30.645	ENSUAMG00000008283	PARN	52	30.645	Ursus_americanus
ENSMUSG00000073460	Pnldc1	91	86.111	ENSUMAG00000011903	PNLDC1	99	79.297	Ursus_maritimus
ENSMUSG00000073460	Pnldc1	97	30.723	ENSUMAG00000004527	PARN	51	30.723	Ursus_maritimus
ENSMUSG00000073460	Pnldc1	100	91.571	ENSVVUG00000006586	PNLDC1	99	87.269	Vulpes_vulpes
ENSMUSG00000073460	Pnldc1	97	31.024	ENSVVUG00000019509	PARN	51	31.024	Vulpes_vulpes
ENSMUSG00000073460	Pnldc1	97	30.606	ENSXETG00000010994	parn	62	30.606	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	27515512.	IDA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	27515512.	IDA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	27515512.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function