EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000074682 (Gene tree)
Gene ID: 67917
Gene Symbol: Zcchc3
Alias: 2810406K24Rik
Full Name: zinc finger%2C CCHC domain containing 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 3073 bases
Position: chr2:152411955-152415027
Accession: 1915167
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000096813	zf-CCHC	PF00098.23	5.3e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000099207	-	3073	-	ENSMUSP00000096813	400 (aa)	-	Q8BPK2

Gene Model

Click here to download ENSMUSG00000074682's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000074682's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000074682	Zcchc3	100	84.444	ENSG00000247315	ZCCHC3	100	86.207	Homo_sapiens
ENSMUSG00000074682	Zcchc3	75	84.818	ENSAMEG00000013999	ZCCHC3	97	84.818	Ailuropoda_melanoleuca
ENSMUSG00000074682	Zcchc3	100	85.856	ENSANAG00000013484	ZCCHC3	100	85.856	Aotus_nancymaae
ENSMUSG00000074682	Zcchc3	64	32.472	ENSACLG00000024271	-	73	31.783	Astatotilapia_calliptera
ENSMUSG00000074682	Zcchc3	60	32.917	ENSACLG00000026211	-	50	32.780	Astatotilapia_calliptera
ENSMUSG00000074682	Zcchc3	70	32.624	ENSAMXG00000037658	-	82	32.624	Astyanax_mexicanus
ENSMUSG00000074682	Zcchc3	60	30.579	ENSAMXG00000029829	-	55	31.739	Astyanax_mexicanus
ENSMUSG00000074682	Zcchc3	52	30.806	ENSAMXG00000033087	-	63	30.806	Astyanax_mexicanus
ENSMUSG00000074682	Zcchc3	59	30.638	ENSAMXG00000035044	-	65	30.638	Astyanax_mexicanus
ENSMUSG00000074682	Zcchc3	100	86.029	ENSBTAG00000002116	ZCCHC3	100	86.029	Bos_taurus
ENSMUSG00000074682	Zcchc3	100	84.367	ENSCJAG00000020839	ZCCHC3	100	86.207	Callithrix_jacchus
ENSMUSG00000074682	Zcchc3	61	96.327	ENSCAFG00000025206	ZCCHC3	99	87.857	Canis_familiaris
ENSMUSG00000074682	Zcchc3	100	83.824	ENSCAFG00020004076	ZCCHC3	100	86.520	Canis_lupus_dingo
ENSMUSG00000074682	Zcchc3	100	83.333	ENSCHIG00000009882	ZCCHC3	100	86.029	Capra_hircus
ENSMUSG00000074682	Zcchc3	100	79.551	ENSCPOG00000023974	ZCCHC3	100	80.549	Cavia_porcellus
ENSMUSG00000074682	Zcchc3	100	83.047	ENSCCAG00000016869	ZCCHC3	100	85.504	Cebus_capucinus
ENSMUSG00000074682	Zcchc3	100	85.644	ENSCATG00000022200	ZCCHC3	100	85.679	Cercocebus_atys
ENSMUSG00000074682	Zcchc3	100	84.406	ENSCLAG00000000269	ZCCHC3	100	85.396	Chinchilla_lanigera
ENSMUSG00000074682	Zcchc3	100	85.891	ENSCSAG00000018761	ZCCHC3	100	85.926	Chlorocebus_sabaeus
ENSMUSG00000074682	Zcchc3	66	94.297	ENSCANG00000010812	ZCCHC3	95	94.297	Colobus_angolensis_palliatus
ENSMUSG00000074682	Zcchc3	88	82.286	ENSCGRG00001011895	-	95	82.286	Cricetulus_griseus_chok1gshd
ENSMUSG00000074682	Zcchc3	100	90.347	ENSCGRG00001009163	-	100	90.594	Cricetulus_griseus_chok1gshd
ENSMUSG00000074682	Zcchc3	88	82.286	ENSCGRG00000008273	-	95	82.286	Cricetulus_griseus_crigri
ENSMUSG00000074682	Zcchc3	100	83.824	ENSDNOG00000047357	ZCCHC3	100	84.804	Dasypus_novemcinctus
ENSMUSG00000074682	Zcchc3	100	82.759	ENSEASG00005003629	ZCCHC3	100	85.961	Equus_asinus_asinus
ENSMUSG00000074682	Zcchc3	100	82.512	ENSECAG00000001035	ZCCHC3	100	85.714	Equus_caballus
ENSMUSG00000074682	Zcchc3	63	35.115	ENSELUG00000017799	-	81	35.115	Esox_lucius
ENSMUSG00000074682	Zcchc3	100	82.968	ENSFCAG00000026760	ZCCHC3	100	84.915	Felis_catus
ENSMUSG00000074682	Zcchc3	82	96.970	ENSGGOG00000044213	ZCCHC3	100	96.970	Gorilla_gorilla
ENSMUSG00000074682	Zcchc3	59	32.377	ENSHBUG00000005879	-	88	32.510	Haplochromis_burtoni
ENSMUSG00000074682	Zcchc3	100	82.673	ENSHGLG00000019351	ZCCHC3	100	83.911	Heterocephalus_glaber_female
ENSMUSG00000074682	Zcchc3	65	85.768	ENSHGLG00100009699	ZCCHC3	83	81.250	Heterocephalus_glaber_male
ENSMUSG00000074682	Zcchc3	52	37.799	ENSIPUG00000000506	-	54	37.799	Ictalurus_punctatus
ENSMUSG00000074682	Zcchc3	100	82.683	ENSJJAG00000020375	Zcchc3	100	83.171	Jaculus_jaculus
ENSMUSG00000074682	Zcchc3	59	37.607	ENSLACG00000002864	-	78	37.607	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	58	37.931	ENSLACG00000012103	-	68	37.931	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	59	35.593	ENSLACG00000003445	-	58	35.593	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	57	40.708	ENSLACG00000022202	-	56	40.708	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	55	39.726	ENSLACG00000012216	-	91	33.569	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	59	38.034	ENSLACG00000002300	-	70	38.034	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	53	38.571	ENSLACG00000022551	-	54	38.571	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	53	38.389	ENSLACG00000003328	-	75	38.389	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	58	37.826	ENSLACG00000002973	-	60	37.826	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	53	36.667	ENSLACG00000000032	-	59	36.667	Latimeria_chalumnae
ENSMUSG00000074682	Zcchc3	66	30.403	ENSLOCG00000000227	-	85	30.403	Lepisosteus_oculatus
ENSMUSG00000074682	Zcchc3	56	33.186	ENSLOCG00000017623	-	90	33.186	Lepisosteus_oculatus
ENSMUSG00000074682	Zcchc3	67	91.176	ENSLAFG00000030593	ZCCHC3	100	92.647	Loxodonta_africana
ENSMUSG00000074682	Zcchc3	100	85.891	ENSMFAG00000044780	ZCCHC3	100	86.173	Macaca_fascicularis
ENSMUSG00000074682	Zcchc3	100	85.891	ENSMMUG00000038935	ZCCHC3	100	86.173	Macaca_mulatta
ENSMUSG00000074682	Zcchc3	100	85.891	ENSMNEG00000000405	ZCCHC3	100	86.173	Macaca_nemestrina
ENSMUSG00000074682	Zcchc3	50	31.707	ENSMZEG00005025871	-	51	31.163	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	57	31.169	ENSMZEG00005000211	-	56	31.169	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	64	32.171	ENSMZEG00005000499	-	73	32.171	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	54	31.532	ENSMZEG00005008237	-	62	31.532	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	58	32.906	ENSMZEG00005021211	-	59	32.906	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	50	31.707	ENSMZEG00005025868	-	51	31.163	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	50	31.707	ENSMZEG00005025869	-	51	31.163	Maylandia_zebra
ENSMUSG00000074682	Zcchc3	100	85.644	ENSMICG00000031267	ZCCHC3	100	85.644	Microcebus_murinus
ENSMUSG00000074682	Zcchc3	100	92.750	ENSMOCG00000002870	Zcchc3	100	92.750	Microtus_ochrogaster
ENSMUSG00000074682	Zcchc3	59	32.911	ENSMMOG00000004516	-	71	33.333	Mola_mola
ENSMUSG00000074682	Zcchc3	100	98.250	MGP_CAROLIEiJ_G0024454	Zcchc3	100	98.250	Mus_caroli
ENSMUSG00000074682	Zcchc3	100	98.000	MGP_PahariEiJ_G0025898	Zcchc3	100	98.000	Mus_pahari
ENSMUSG00000074682	Zcchc3	100	99.250	MGP_SPRETEiJ_G0025375	Zcchc3	100	99.250	Mus_spretus
ENSMUSG00000074682	Zcchc3	100	85.500	ENSNGAG00000006074	Zcchc3	100	84.750	Nannospalax_galili
ENSMUSG00000074682	Zcchc3	50	33.171	ENSNBRG00000024091	-	56	33.171	Neolamprologus_brichardi
ENSMUSG00000074682	Zcchc3	100	80.446	ENSNLEG00000009533	ZCCHC3	100	82.222	Nomascus_leucogenys
ENSMUSG00000074682	Zcchc3	100	81.553	ENSOPRG00000005081	ZCCHC3	100	81.311	Ochotona_princeps
ENSMUSG00000074682	Zcchc3	100	84.236	ENSODEG00000010730	ZCCHC3	100	83.005	Octodon_degus
ENSMUSG00000074682	Zcchc3	100	80.693	ENSOCUG00000017024	ZCCHC3	100	80.941	Oryctolagus_cuniculus
ENSMUSG00000074682	Zcchc3	100	82.641	ENSOGAG00000025208	ZCCHC3	100	83.130	Otolemur_garnettii
ENSMUSG00000074682	Zcchc3	65	93.585	ENSOARG00000019161	ZCCHC3	100	89.726	Ovis_aries
ENSMUSG00000074682	Zcchc3	65	94.340	ENSPPAG00000010453	-	100	94.340	Pan_paniscus
ENSMUSG00000074682	Zcchc3	100	82.108	ENSPPRG00000014724	ZCCHC3	100	85.784	Panthera_pardus
ENSMUSG00000074682	Zcchc3	61	88.980	ENSPTIG00000009393	ZCCHC3	100	88.980	Panthera_tigris_altaica
ENSMUSG00000074682	Zcchc3	100	83.578	ENSPTRG00000047645	ZCCHC3	100	85.330	Pan_troglodytes
ENSMUSG00000074682	Zcchc3	100	85.891	ENSPANG00000013450	ZCCHC3	100	85.926	Papio_anubis
ENSMUSG00000074682	Zcchc3	100	84.691	ENSPEMG00000009059	Zcchc3	100	85.926	Peromyscus_maniculatus_bairdii
ENSMUSG00000074682	Zcchc3	90	81.793	ENSPCAG00000008034	ZCCHC3	100	82.114	Procavia_capensis
ENSMUSG00000074682	Zcchc3	100	85.396	ENSPCOG00000012289	ZCCHC3	100	85.396	Propithecus_coquereli
ENSMUSG00000074682	Zcchc3	100	84.767	ENSPVAG00000000182	ZCCHC3	100	84.767	Pteropus_vampyrus
ENSMUSG00000074682	Zcchc3	100	94.500	ENSRNOG00000007520	Zcchc3	100	94.500	Rattus_norvegicus
ENSMUSG00000074682	Zcchc3	100	86.139	ENSRBIG00000029757	ZCCHC3	100	85.926	Rhinopithecus_bieti
ENSMUSG00000074682	Zcchc3	100	86.139	ENSRROG00000005210	ZCCHC3	100	85.926	Rhinopithecus_roxellana
ENSMUSG00000074682	Zcchc3	100	85.714	ENSSSCG00000007211	ZCCHC3	100	83.824	Sus_scrofa
ENSMUSG00000074682	Zcchc3	100	84.559	ENSTTRG00000008511	ZCCHC3	100	85.784	Tursiops_truncatus
ENSMUSG00000074682	Zcchc3	99	79.412	ENSUAMG00000023407	ZCCHC3	99	79.412	Ursus_americanus
ENSMUSG00000074682	Zcchc3	62	93.089	ENSVPAG00000011267	-	100	93.089	Vicugna_pacos
ENSMUSG00000074682	Zcchc3	76	35.082	ENSXETG00000033341	-	94	44.295	Xenopus_tropicalis
ENSMUSG00000074682	Zcchc3	75	34.551	ENSXETG00000005590	-	100	34.884	Xenopus_tropicalis
ENSMUSG00000074682	Zcchc3	54	35.321	ENSXCOG00000010666	-	57	35.321	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002218	activation of innate immune response	30135424.30193849.	IMP	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0002376	immune system process	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009597	detection of virus	-	ISO	Process
GO:0032481	positive regulation of type I interferon production	30135424.	IMP	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051607	defense response to virus	30135424.30193849.	IMP	Process
GO:0071360	cellular response to exogenous dsRNA	30193849.	IMP	Process
GO:0071360	cellular response to exogenous dsRNA	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process