EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000074817 (Gene tree)
Gene ID: 56522
Gene Symbol: Papolb
Alias: Papola-ps|Papt|Plap-ps|TPAP
Full Name: poly (A) polymerase beta (testis specific)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 4239 bases
Position: chr5:142525838-142530076
Accession: 1932115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000100595	PAP_RNA-bind	PF04926.15	1.5e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000099400	-	4239	-	ENSMUSP00000100595	642 (aa)	-	A1L349

Gene Model

Click here to download ENSMUSG00000074817's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000074817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000074817	Papolb	86	68.421	ENSMUSG00000020273	Papolg	95	78.973
ENSMUSG00000074817	Papolb	99	85.848	ENSMUSG00000021111	Papola	93	85.848

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000074817	Papolb	97	87.019	ENSG00000218823	PAPOLB	98	87.019	Homo_sapiens
ENSMUSG00000074817	Papolb	97	82.372	ENSANAG00000033074	PAPOLB	98	82.372	Aotus_nancymaae
ENSMUSG00000074817	Papolb	99	87.500	ENSBTAG00000052734	PAPOLB	94	87.500	Bos_taurus
ENSMUSG00000074817	Papolb	79	86.957	ENSCPOG00000021527	PAPOLB	99	79.894	Cavia_porcellus
ENSMUSG00000074817	Papolb	99	86.137	ENSCLAG00000004689	PAPOLB	100	86.137	Chinchilla_lanigera
ENSMUSG00000074817	Papolb	98	83.703	ENSDNOG00000033378	PAPOLB	90	83.703	Dasypus_novemcinctus
ENSMUSG00000074817	Papolb	95	90.538	ENSDORG00000001140	Papolb	99	89.223	Dipodomys_ordii
ENSMUSG00000074817	Papolb	97	87.581	ENSEASG00005021531	PAPOLB	93	86.094	Equus_asinus_asinus
ENSMUSG00000074817	Papolb	93	79.466	ENSHGLG00000002987	-	98	79.466	Heterocephalus_glaber_female
ENSMUSG00000074817	Papolb	99	93.281	ENSJJAG00000012212	Papolb	92	93.281	Jaculus_jaculus
ENSMUSG00000074817	Papolb	86	90.364	ENSMFAG00000031074	PAPOLB	99	90.364	Macaca_fascicularis
ENSMUSG00000074817	Papolb	99	86.207	ENSMMUG00000043732	PAPOLB	89	87.319	Macaca_mulatta
ENSMUSG00000074817	Papolb	100	99.844	MGP_CAROLIEiJ_G0027962	Papolb	100	99.844	Mus_caroli
ENSMUSG00000074817	Papolb	100	98.131	MGP_PahariEiJ_G0024534	Papolb	100	98.131	Mus_pahari
ENSMUSG00000074817	Papolb	100	99.844	MGP_SPRETEiJ_G0028966	Papolb	100	99.844	Mus_spretus
ENSMUSG00000074817	Papolb	99	85.491	ENSMLUG00000029802	PAPOLB	97	85.491	Myotis_lucifugus
ENSMUSG00000074817	Papolb	99	87.500	ENSODEG00000009844	PAPOLB	95	87.500	Octodon_degus
ENSMUSG00000074817	Papolb	99	84.112	ENSOCUG00000022988	PAPOLB	100	89.680	Oryctolagus_cuniculus
ENSMUSG00000074817	Papolb	99	89.704	ENSOGAG00000031103	PAPOLB	91	89.704	Otolemur_garnettii
ENSMUSG00000074817	Papolb	97	86.677	ENSPTRG00000045383	PAPOLB	91	86.677	Pan_troglodytes
ENSMUSG00000074817	Papolb	98	89.474	ENSUMAG00000007631	PAPOLB	99	89.474	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004652	polynucleotide adenylyltransferase activity	21873635.	IBA	Function
GO:0004652	polynucleotide adenylyltransferase activity	11319863.	ISA	Function
GO:0004652	polynucleotide adenylyltransferase activity	11150526.	ISS	Function
GO:0005515	protein binding	18325338.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11150526.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11150526.18325338.	IDA	Component
GO:0005783	endoplasmic reticulum	18325338.	IPI	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function
GO:0031123	RNA 3'-end processing	-	IEA	Process
GO:0043631	RNA polyadenylation	11319863.	ISA	Process
GO:0046872	metal ion binding	-	IEA	Function