EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000075376 (Gene tree)
Gene ID: 319817
Gene Symbol: Rc3h2
Alias: 2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164
Full Name: ring finger and CCCH-type zinc finger domains 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 52835 bases
Position: chr2:37370069-37422903
Accession: 2442789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108556	zf-CCCH	PF00642.24	3e-06	1	1
ENSMUSP00000097721	zf-CCCH	PF00642.24	3.3e-06	1	1
ENSMUSP00000108558	zf-CCCH	PF00642.24	3.3e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000112936	-	5828	-	ENSMUSP00000108558	1187 (aa)	-	P0C090
ENSMUST00000112934	-	8948	-	ENSMUSP00000108556	1125 (aa)	-	A2AVP4
ENSMUST00000205124	-	2236	-	-	- (aa)	-	-
ENSMUST00000204690	-	3479	-	-	- (aa)	-	-
ENSMUST00000143826	-	3083	-	-	- (aa)	-	-
ENSMUST00000100143	-	8799	XM_006498124	ENSMUSP00000097721	1187 (aa)	XP_006498187	P0C090
ENSMUST00000204962	-	2698	-	-	- (aa)	-	-
ENSMUST00000204959	-	575	-	-	- (aa)	-	-
ENSMUST00000124218	-	513	-	-	- (aa)	-	-
ENSMUST00000125619	-	5754	-	ENSMUSP00000145082	478 (aa)	-	A0A0N4SVF7

Gene Model

Click here to download ENSMUSG00000075376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000075376's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000075376	Rc3h2	98	80.892	ENSMUSG00000040423	Rc3h1	92	54.296

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000075376	Rc3h2	100	98.326	ENSG00000056586	RC3H2	100	98.326	Homo_sapiens
ENSMUSG00000075376	Rc3h2	95	87.389	ENSAPOG00000002117	rc3h2	93	56.856	Acanthochromis_polyacanthus
ENSMUSG00000075376	Rc3h2	100	95.634	ENSAMEG00000006498	RC3H2	100	95.634	Ailuropoda_melanoleuca
ENSMUSG00000075376	Rc3h2	93	86.486	ENSACIG00000005206	rc3h2	97	84.934	Amphilophus_citrinellus
ENSMUSG00000075376	Rc3h2	92	87.783	ENSAOCG00000007724	rc3h2	96	87.783	Amphiprion_ocellaris
ENSMUSG00000075376	Rc3h2	92	87.755	ENSAOCG00000019780	-	93	87.755	Amphiprion_ocellaris
ENSMUSG00000075376	Rc3h2	95	87.168	ENSAPEG00000007757	rc3h2	93	57.031	Amphiprion_percula
ENSMUSG00000075376	Rc3h2	94	86.253	ENSATEG00000019414	rc3h2	91	56.752	Anabas_testudineus
ENSMUSG00000075376	Rc3h2	95	98.896	ENSAPLG00000013920	RC3H2	100	90.109	Anas_platyrhynchos
ENSMUSG00000075376	Rc3h2	100	98.745	ENSANAG00000030862	RC3H2	100	98.745	Aotus_nancymaae
ENSMUSG00000075376	Rc3h2	99	82.077	ENSACLG00000023136	rc3h2	92	55.867	Astatotilapia_calliptera
ENSMUSG00000075376	Rc3h2	94	85.333	ENSAMXG00000006778	rc3h2	93	54.891	Astyanax_mexicanus
ENSMUSG00000075376	Rc3h2	100	95.038	ENSBTAG00000023867	RC3H2	100	95.038	Bos_taurus
ENSMUSG00000075376	Rc3h2	100	98.745	ENSCJAG00000020050	RC3H2	100	98.745	Callithrix_jacchus
ENSMUSG00000075376	Rc3h2	92	100.000	ENSCAFG00000032522	-	100	100.000	Canis_familiaris
ENSMUSG00000075376	Rc3h2	100	98.117	ENSCAFG00020015288	RC3H2	100	98.117	Canis_lupus_dingo
ENSMUSG00000075376	Rc3h2	100	94.954	ENSCHIG00000019319	RC3H2	100	94.954	Capra_hircus
ENSMUSG00000075376	Rc3h2	89	79.300	ENSCAPG00000017086	RC3H2	93	79.500	Cavia_aperea
ENSMUSG00000075376	Rc3h2	100	95.791	ENSCPOG00000008511	RC3H2	100	95.791	Cavia_porcellus
ENSMUSG00000075376	Rc3h2	100	98.745	ENSCCAG00000001404	RC3H2	100	98.745	Cebus_capucinus
ENSMUSG00000075376	Rc3h2	100	98.326	ENSCATG00000036655	RC3H2	100	98.326	Cercocebus_atys
ENSMUSG00000075376	Rc3h2	100	95.875	ENSCLAG00000013261	RC3H2	100	95.875	Chinchilla_lanigera
ENSMUSG00000075376	Rc3h2	89	95.104	ENSCSAG00000013416	RC3H2	100	95.104	Chlorocebus_sabaeus
ENSMUSG00000075376	Rc3h2	95	98.896	ENSCPBG00000009811	RC3H2	100	89.681	Chrysemys_picta_bellii
ENSMUSG00000075376	Rc3h2	100	98.326	ENSCANG00000043140	RC3H2	100	98.326	Colobus_angolensis_palliatus
ENSMUSG00000075376	Rc3h2	100	95.875	ENSCGRG00001010006	Rc3h2	100	95.118	Cricetulus_griseus_chok1gshd
ENSMUSG00000075376	Rc3h2	95	99.779	ENSCGRG00000009255	Rc3h2	100	96.333	Cricetulus_griseus_crigri
ENSMUSG00000075376	Rc3h2	95	86.283	ENSCSEG00000017460	rc3h2	96	55.961	Cynoglossus_semilaevis
ENSMUSG00000075376	Rc3h2	96	84.749	ENSCVAG00000012202	rc3h2	91	56.227	Cyprinodon_variegatus
ENSMUSG00000075376	Rc3h2	95	84.956	ENSDARG00000063050	rc3h2	96	54.963	Danio_rerio
ENSMUSG00000075376	Rc3h2	100	94.281	ENSDNOG00000014557	RC3H2	100	94.281	Dasypus_novemcinctus
ENSMUSG00000075376	Rc3h2	100	95.370	ENSDORG00000006398	Rc3h2	100	95.370	Dipodomys_ordii
ENSMUSG00000075376	Rc3h2	100	92.683	ENSEASG00005020897	RC3H2	100	92.683	Equus_asinus_asinus
ENSMUSG00000075376	Rc3h2	100	95.711	ENSECAG00000022176	RC3H2	100	95.711	Equus_caballus
ENSMUSG00000075376	Rc3h2	95	87.389	ENSELUG00000006105	rc3h2	93	57.298	Esox_lucius
ENSMUSG00000075376	Rc3h2	100	95.627	ENSFCAG00000007375	RC3H2	100	95.627	Felis_catus
ENSMUSG00000075376	Rc3h2	95	98.675	ENSFALG00000002011	RC3H2	100	89.941	Ficedula_albicollis
ENSMUSG00000075376	Rc3h2	100	96.212	ENSFDAG00000012477	RC3H2	100	96.212	Fukomys_damarensis
ENSMUSG00000075376	Rc3h2	94	87.082	ENSFHEG00000012272	rc3h2	93	55.467	Fundulus_heteroclitus
ENSMUSG00000075376	Rc3h2	54	87.160	ENSGMOG00000016709	-	100	53.105	Gadus_morhua
ENSMUSG00000075376	Rc3h2	95	98.896	ENSGALG00000001253	RC3H2	100	90.109	Gallus_gallus
ENSMUSG00000075376	Rc3h2	95	86.062	ENSGAFG00000007679	rc3h2	96	55.605	Gambusia_affinis
ENSMUSG00000075376	Rc3h2	92	86.878	ENSGACG00000017369	rc3h2	100	86.878	Gasterosteus_aculeatus
ENSMUSG00000075376	Rc3h2	95	99.117	ENSGAGG00000018295	RC3H2	100	89.690	Gopherus_agassizii
ENSMUSG00000075376	Rc3h2	100	98.117	ENSGGOG00000017062	RC3H2	100	98.117	Gorilla_gorilla
ENSMUSG00000075376	Rc3h2	99	84.310	ENSHBUG00000003976	rc3h2	92	56.483	Haplochromis_burtoni
ENSMUSG00000075376	Rc3h2	100	98.117	ENSHGLG00000012014	-	100	98.117	Heterocephalus_glaber_female
ENSMUSG00000075376	Rc3h2	100	95.963	ENSHGLG00100018015	RC3H2	100	95.963	Heterocephalus_glaber_male
ENSMUSG00000075376	Rc3h2	94	83.742	ENSHCOG00000003006	rc3h2	87	57.468	Hippocampus_comes
ENSMUSG00000075376	Rc3h2	95	83.407	ENSIPUG00000021433	rc3h2	96	53.413	Ictalurus_punctatus
ENSMUSG00000075376	Rc3h2	100	95.960	ENSSTOG00000010655	RC3H2	100	95.960	Ictidomys_tridecemlineatus
ENSMUSG00000075376	Rc3h2	100	95.714	ENSJJAG00000022376	Rc3h2	100	95.714	Jaculus_jaculus
ENSMUSG00000075376	Rc3h2	95	85.841	ENSKMAG00000010936	rc3h2	91	56.486	Kryptolebias_marmoratus
ENSMUSG00000075376	Rc3h2	95	93.598	ENSLOCG00000002894	rc3h2	94	62.324	Lepisosteus_oculatus
ENSMUSG00000075376	Rc3h2	95	99.558	ENSLAFG00000003521	RC3H2	100	94.197	Loxodonta_africana
ENSMUSG00000075376	Rc3h2	100	98.326	ENSMFAG00000035621	RC3H2	100	100.000	Macaca_fascicularis
ENSMUSG00000075376	Rc3h2	100	98.326	ENSMMUG00000021134	RC3H2	100	98.326	Macaca_mulatta
ENSMUSG00000075376	Rc3h2	100	96.025	ENSMNEG00000031599	RC3H2	100	96.025	Macaca_nemestrina
ENSMUSG00000075376	Rc3h2	100	98.326	ENSMLEG00000033809	RC3H2	100	98.326	Mandrillus_leucophaeus
ENSMUSG00000075376	Rc3h2	92	87.528	ENSMAMG00000009119	rc3h2	93	87.528	Mastacembelus_armatus
ENSMUSG00000075376	Rc3h2	99	84.310	ENSMZEG00005017019	rc3h2	92	56.560	Maylandia_zebra
ENSMUSG00000075376	Rc3h2	95	98.462	ENSMGAG00000007984	RC3H2	100	90.042	Meleagris_gallopavo
ENSMUSG00000075376	Rc3h2	95	84.768	ENSMAUG00000003117	Rc3h2	95	90.263	Mesocricetus_auratus
ENSMUSG00000075376	Rc3h2	100	97.908	ENSMICG00000003227	RC3H2	100	97.908	Microcebus_murinus
ENSMUSG00000075376	Rc3h2	100	96.380	ENSMOCG00000009592	Rc3h2	100	96.380	Microtus_ochrogaster
ENSMUSG00000075376	Rc3h2	96	85.996	ENSMMOG00000021305	rc3h2	96	86.534	Mola_mola
ENSMUSG00000075376	Rc3h2	95	98.896	ENSMODG00000019725	RC3H2	79	92.602	Monodelphis_domestica
ENSMUSG00000075376	Rc3h2	92	86.364	ENSMALG00000017885	rc3h2	92	86.364	Monopterus_albus
ENSMUSG00000075376	Rc3h2	100	99.582	MGP_CAROLIEiJ_G0023516	Rc3h2	100	99.582	Mus_caroli
ENSMUSG00000075376	Rc3h2	100	99.582	MGP_PahariEiJ_G0024969	Rc3h2	100	99.582	Mus_pahari
ENSMUSG00000075376	Rc3h2	100	99.791	MGP_SPRETEiJ_G0024436	Rc3h2	100	99.791	Mus_spretus
ENSMUSG00000075376	Rc3h2	100	95.458	ENSMPUG00000014141	RC3H2	100	95.458	Mustela_putorius_furo
ENSMUSG00000075376	Rc3h2	95	99.338	ENSMLUG00000013992	RC3H2	100	94.286	Myotis_lucifugus
ENSMUSG00000075376	Rc3h2	100	95.816	ENSNGAG00000009763	-	100	95.816	Nannospalax_galili
ENSMUSG00000075376	Rc3h2	99	84.310	ENSNBRG00000009276	rc3h2	92	56.244	Neolamprologus_brichardi
ENSMUSG00000075376	Rc3h2	100	98.326	ENSNLEG00000017204	RC3H2	100	98.326	Nomascus_leucogenys
ENSMUSG00000075376	Rc3h2	63	99.209	ENSMEUG00000001299	-	68	99.209	Notamacropus_eugenii
ENSMUSG00000075376	Rc3h2	79	98.138	ENSOPRG00000000135	RC3H2	93	90.875	Ochotona_princeps
ENSMUSG00000075376	Rc3h2	100	98.117	ENSODEG00000005918	-	100	98.117	Octodon_degus
ENSMUSG00000075376	Rc3h2	99	84.310	ENSONIG00000003945	rc3h2	100	58.621	Oreochromis_niloticus
ENSMUSG00000075376	Rc3h2	95	99.117	ENSOANG00000008194	RC3H2	100	92.130	Ornithorhynchus_anatinus
ENSMUSG00000075376	Rc3h2	100	95.539	ENSOCUG00000008804	RC3H2	100	95.539	Oryctolagus_cuniculus
ENSMUSG00000075376	Rc3h2	94	87.361	ENSORLG00000010018	rc3h2	92	56.050	Oryzias_latipes
ENSMUSG00000075376	Rc3h2	94	87.361	ENSORLG00020013257	rc3h2	92	56.317	Oryzias_latipes_hni
ENSMUSG00000075376	Rc3h2	94	87.361	ENSORLG00015001525	rc3h2	92	56.228	Oryzias_latipes_hsok
ENSMUSG00000075376	Rc3h2	94	87.361	ENSOMEG00000023540	rc3h2	93	56.300	Oryzias_melastigma
ENSMUSG00000075376	Rc3h2	100	94.962	ENSOGAG00000010678	RC3H2	100	94.962	Otolemur_garnettii
ENSMUSG00000075376	Rc3h2	100	94.878	ENSOARG00000013965	RC3H2	100	94.878	Ovis_aries
ENSMUSG00000075376	Rc3h2	100	98.117	ENSPPAG00000036013	RC3H2	100	98.117	Pan_paniscus
ENSMUSG00000075376	Rc3h2	100	95.550	ENSPPRG00000008698	RC3H2	100	95.550	Panthera_pardus
ENSMUSG00000075376	Rc3h2	100	95.550	ENSPTIG00000014257	RC3H2	100	95.550	Panthera_tigris_altaica
ENSMUSG00000075376	Rc3h2	100	98.117	ENSPTRG00000021339	RC3H2	100	98.117	Pan_troglodytes
ENSMUSG00000075376	Rc3h2	100	94.142	ENSPANG00000025840	RC3H2	100	94.142	Papio_anubis
ENSMUSG00000075376	Rc3h2	95	89.183	ENSPKIG00000021910	rc3h2	91	60.727	Paramormyrops_kingsleyae
ENSMUSG00000075376	Rc3h2	95	98.896	ENSPSIG00000005393	RC3H2	100	90.025	Pelodiscus_sinensis
ENSMUSG00000075376	Rc3h2	93	86.682	ENSPMGG00000023963	rc3h2	94	86.682	Periophthalmus_magnuspinnatus
ENSMUSG00000075376	Rc3h2	100	96.549	ENSPEMG00000023441	Rc3h2	100	96.549	Peromyscus_maniculatus_bairdii
ENSMUSG00000075376	Rc3h2	95	99.117	ENSPCIG00000025559	RC3H2	100	92.295	Phascolarctos_cinereus
ENSMUSG00000075376	Rc3h2	95	86.283	ENSPFOG00000019699	rc3h2	100	58.350	Poecilia_formosa
ENSMUSG00000075376	Rc3h2	95	85.841	ENSPLAG00000005799	rc3h2	89	77.885	Poecilia_latipinna
ENSMUSG00000075376	Rc3h2	95	86.283	ENSPMEG00000014187	rc3h2	93	55.467	Poecilia_mexicana
ENSMUSG00000075376	Rc3h2	95	86.283	ENSPREG00000008979	rc3h2	92	55.289	Poecilia_reticulata
ENSMUSG00000075376	Rc3h2	87	87.747	ENSPCAG00000010154	RC3H2	86	87.747	Procavia_capensis
ENSMUSG00000075376	Rc3h2	99	82.077	ENSPNYG00000012063	rc3h2	92	55.867	Pundamilia_nyererei
ENSMUSG00000075376	Rc3h2	95	86.504	ENSPNAG00000017502	rc3h2	88	59.142	Pygocentrus_nattereri
ENSMUSG00000075376	Rc3h2	100	98.484	ENSRNOG00000009196	Rc3h2	100	98.484	Rattus_norvegicus
ENSMUSG00000075376	Rc3h2	100	98.326	ENSRBIG00000032579	RC3H2	100	98.326	Rhinopithecus_bieti
ENSMUSG00000075376	Rc3h2	100	98.326	ENSRROG00000043784	RC3H2	100	98.326	Rhinopithecus_roxellana
ENSMUSG00000075376	Rc3h2	100	98.536	ENSSBOG00000029100	RC3H2	100	98.536	Saimiri_boliviensis_boliviensis
ENSMUSG00000075376	Rc3h2	95	99.117	ENSSHAG00000007498	RC3H2	100	91.890	Sarcophilus_harrisii
ENSMUSG00000075376	Rc3h2	92	90.023	ENSSFOG00015000964	rc3h2	91	90.023	Scleropages_formosus
ENSMUSG00000075376	Rc3h2	95	86.283	ENSSMAG00000020048	rc3h2	93	56.667	Scophthalmus_maximus
ENSMUSG00000075376	Rc3h2	95	87.168	ENSSDUG00000016022	rc3h2	93	57.093	Seriola_dumerili
ENSMUSG00000075376	Rc3h2	95	87.168	ENSSLDG00000016070	rc3h2	93	56.830	Seriola_lalandi_dorsalis
ENSMUSG00000075376	Rc3h2	95	99.338	ENSSARG00000012329	RC3H2	100	93.535	Sorex_araneus
ENSMUSG00000075376	Rc3h2	95	97.788	ENSSPUG00000001457	RC3H2	100	87.124	Sphenodon_punctatus
ENSMUSG00000075376	Rc3h2	96	86.304	ENSSPAG00000005233	rc3h2	93	56.545	Stegastes_partitus
ENSMUSG00000075376	Rc3h2	100	98.117	ENSSSCG00000005575	RC3H2	98	98.117	Sus_scrofa
ENSMUSG00000075376	Rc3h2	95	98.896	ENSTGUG00000006889	-	100	90.109	Taeniopygia_guttata
ENSMUSG00000075376	Rc3h2	92	86.199	ENSTRUG00000003364	rc3h2	100	86.199	Takifugu_rubripes
ENSMUSG00000075376	Rc3h2	97	82.937	ENSTNIG00000004942	rc3h2	100	58.977	Tetraodon_nigroviridis
ENSMUSG00000075376	Rc3h2	95	98.013	ENSTBEG00000009622	RC3H2	86	100.000	Tupaia_belangeri
ENSMUSG00000075376	Rc3h2	95	98.896	ENSTTRG00000016954	RC3H2	94	96.405	Tursiops_truncatus
ENSMUSG00000075376	Rc3h2	100	95.879	ENSUAMG00000015355	RC3H2	100	95.879	Ursus_americanus
ENSMUSG00000075376	Rc3h2	100	98.326	ENSUMAG00000003161	RC3H2	100	98.326	Ursus_maritimus
ENSMUSG00000075376	Rc3h2	100	95.046	ENSVPAG00000005994	RC3H2	100	95.046	Vicugna_pacos
ENSMUSG00000075376	Rc3h2	100	95.290	ENSVVUG00000009519	RC3H2	100	95.290	Vulpes_vulpes
ENSMUSG00000075376	Rc3h2	94	86.414	ENSXCOG00000005002	rc3h2	99	84.165	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000209	protein polyubiquitination	-	ISO	Process
GO:0001782	B cell homeostasis	23583643.	IGI	Process
GO:0003677	DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0003729	mRNA binding	23583643.	IDA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005515	protein binding	23583643.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0009791	post-embryonic development	23583643.	IMP	Process
GO:0009986	cell surface	-	ISO	Component
GO:0010468	regulation of gene expression	23583643.	IDA	Process
GO:0010608	posttranscriptional regulation of gene expression	23583643.	IDA	Process
GO:0016020	membrane	-	ISO	Component
GO:0016567	protein ubiquitination	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0035264	multicellular organism growth	23583643.	IMP	Process
GO:0035613	RNA stem-loop binding	-	ISO	Function
GO:0042098	T cell proliferation	23583643.	IGI	Process
GO:0043029	T cell homeostasis	23583643.	IGI	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048286	lung alveolus development	23583643.	IMP	Process
GO:0048535	lymph node development	23583643.	IGI	Process
GO:0048536	spleen development	23583643.	IGI	Process
GO:0050852	T cell receptor signaling pathway	25282160.	IMP	Process
GO:0060173	limb development	23583643.	IMP	Process
GO:0061470	T follicular helper cell differentiation	23583643.	IGI	Process
GO:1901224	positive regulation of NIK/NF-kappaB signaling	23583643.	IDA	Process
GO:2000320	negative regulation of T-helper 17 cell differentiation	25282160.	IMP	Process
GO:2000628	regulation of miRNA metabolic process	25697406.	IMP	Process