EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000078427 (Gene tree)
Gene ID: 66118
Gene Symbol: Sarnp
Alias: 1110005A23Rik
Full Name: SAP domain containing ribonucleoprotein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 60297 bases
Position: chr10:128817333-128877629
Accession: 1913368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000100863	SAP	PF02037.27	1.2e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000105230	-	918	XM_006513949	ENSMUSP00000100863	210 (aa)	-	Q9D1J3
ENSMUST00000220381	-	1084	-	ENSMUSP00000151317	147 (aa)	-	A0A1W2P6N2
ENSMUST00000218622	-	427	-	-	- (aa)	-	-
ENSMUST00000219512	-	953	XM_011243523	ENSMUSP00000151656	127 (aa)	XP_011241825	A0A1W2P7G2
ENSMUST00000220150	-	423	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000078427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078427's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000078427	Sarnp	100	100.000	ENSMUSG00000051255	Gm6563	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078427	Sarnp	100	95.714	ENSG00000205323	SARNP	100	95.714	Homo_sapiens
ENSMUSG00000078427	Sarnp	95	55.479	ENSAPOG00000005247	sarnp	78	58.883	Acanthochromis_polyacanthus
ENSMUSG00000078427	Sarnp	100	95.714	ENSAMEG00000011769	SARNP	100	95.714	Ailuropoda_melanoleuca
ENSMUSG00000078427	Sarnp	98	58.605	ENSAPEG00000016710	sarnp	99	59.070	Amphiprion_percula
ENSMUSG00000078427	Sarnp	98	59.906	ENSATEG00000024594	sarnp	99	59.906	Anabas_testudineus
ENSMUSG00000078427	Sarnp	99	82.212	ENSACAG00000015446	SARNP	98	82.212	Anolis_carolinensis
ENSMUSG00000078427	Sarnp	100	83.333	ENSANAG00000025021	-	100	85.714	Aotus_nancymaae
ENSMUSG00000078427	Sarnp	100	94.762	ENSANAG00000027405	-	100	94.762	Aotus_nancymaae
ENSMUSG00000078427	Sarnp	98	57.870	ENSACLG00000016479	sarnp	99	57.870	Astatotilapia_calliptera
ENSMUSG00000078427	Sarnp	98	60.377	ENSAMXG00000004834	sarnp	99	61.792	Astyanax_mexicanus
ENSMUSG00000078427	Sarnp	97	90.278	ENSBTAG00000032446	-	100	76.056	Bos_taurus
ENSMUSG00000078427	Sarnp	100	95.714	ENSBTAG00000020662	SARNP	100	95.714	Bos_taurus
ENSMUSG00000078427	Sarnp	100	94.286	ENSCJAG00000007853	-	100	94.286	Callithrix_jacchus
ENSMUSG00000078427	Sarnp	95	95.500	ENSCAFG00000023714	SARNP	95	95.500	Canis_familiaris
ENSMUSG00000078427	Sarnp	100	83.099	ENSCAFG00020026107	SARNP	100	83.099	Canis_lupus_dingo
ENSMUSG00000078427	Sarnp	99	85.990	ENSCHIG00000013335	-	98	85.990	Capra_hircus
ENSMUSG00000078427	Sarnp	100	76.190	ENSCHIG00000017443	-	100	78.571	Capra_hircus
ENSMUSG00000078427	Sarnp	100	97.143	ENSTSYG00000009225	SARNP	100	97.143	Carlito_syrichta
ENSMUSG00000078427	Sarnp	100	96.190	ENSCPOG00000011755	-	100	96.190	Cavia_porcellus
ENSMUSG00000078427	Sarnp	100	83.810	ENSCCAG00000004296	-	95	83.495	Cebus_capucinus
ENSMUSG00000078427	Sarnp	100	74.762	ENSCCAG00000030892	-	98	74.762	Cebus_capucinus
ENSMUSG00000078427	Sarnp	100	95.714	ENSCCAG00000019247	-	100	95.714	Cebus_capucinus
ENSMUSG00000078427	Sarnp	100	95.714	ENSCATG00000045088	SARNP	100	95.714	Cercocebus_atys
ENSMUSG00000078427	Sarnp	100	86.190	ENSCATG00000042076	-	98	86.190	Cercocebus_atys
ENSMUSG00000078427	Sarnp	100	96.190	ENSCLAG00000007774	-	100	96.190	Chinchilla_lanigera
ENSMUSG00000078427	Sarnp	100	95.714	ENSCSAG00000005303	SARNP	98	95.714	Chlorocebus_sabaeus
ENSMUSG00000078427	Sarnp	94	91.414	ENSCHOG00000005081	SARNP	100	91.414	Choloepus_hoffmanni
ENSMUSG00000078427	Sarnp	99	86.124	ENSCPBG00000012618	SARNP	99	86.124	Chrysemys_picta_bellii
ENSMUSG00000078427	Sarnp	99	34.211	ENSCING00000015811	-	99	38.158	Ciona_intestinalis
ENSMUSG00000078427	Sarnp	100	95.238	ENSCANG00000027918	-	100	95.238	Colobus_angolensis_palliatus
ENSMUSG00000078427	Sarnp	100	98.571	ENSCGRG00001018129	-	100	98.571	Cricetulus_griseus_chok1gshd
ENSMUSG00000078427	Sarnp	98	73.430	ENSCGRG00001022403	-	78	73.659	Cricetulus_griseus_chok1gshd
ENSMUSG00000078427	Sarnp	100	79.524	ENSCGRG00001013880	-	100	79.524	Cricetulus_griseus_chok1gshd
ENSMUSG00000078427	Sarnp	100	79.524	ENSCGRG00000004298	-	100	79.524	Cricetulus_griseus_crigri
ENSMUSG00000078427	Sarnp	100	98.571	ENSCGRG00000015182	-	100	98.571	Cricetulus_griseus_crigri
ENSMUSG00000078427	Sarnp	99	79.426	ENSCGRG00000000109	-	76	80.000	Cricetulus_griseus_crigri
ENSMUSG00000078427	Sarnp	98	56.221	ENSCVAG00000010924	sarnp	99	57.143	Cyprinodon_variegatus
ENSMUSG00000078427	Sarnp	98	61.165	ENSDARG00000059357	sarnp	99	62.136	Danio_rerio
ENSMUSG00000078427	Sarnp	100	95.714	ENSDNOG00000014518	SARNP	100	95.714	Dasypus_novemcinctus
ENSMUSG00000078427	Sarnp	100	96.190	ENSDORG00000001065	-	100	96.190	Dipodomys_ordii
ENSMUSG00000078427	Sarnp	99	52.315	ENSEBUG00000016080	sarnp	98	52.315	Eptatretus_burgeri
ENSMUSG00000078427	Sarnp	100	97.143	ENSECAG00000000708	SARNP	100	97.143	Equus_caballus
ENSMUSG00000078427	Sarnp	98	58.879	ENSELUG00000020983	sarnp	99	58.962	Esox_lucius
ENSMUSG00000078427	Sarnp	98	55.405	ENSELUG00000006786	HCC1	98	55.405	Esox_lucius
ENSMUSG00000078427	Sarnp	100	95.714	ENSFCAG00000037076	SARNP	100	95.714	Felis_catus
ENSMUSG00000078427	Sarnp	90	76.064	ENSFALG00000000679	SARNP	73	76.064	Ficedula_albicollis
ENSMUSG00000078427	Sarnp	100	96.667	ENSFDAG00000007766	SARNP	100	96.667	Fukomys_damarensis
ENSMUSG00000078427	Sarnp	98	55.760	ENSFHEG00000012192	sarnp	99	56.682	Fundulus_heteroclitus
ENSMUSG00000078427	Sarnp	98	53.589	ENSGMOG00000011467	sarnp	98	53.589	Gadus_morhua
ENSMUSG00000078427	Sarnp	99	84.689	ENSGALG00000030342	SARNP	99	84.689	Gallus_gallus
ENSMUSG00000078427	Sarnp	98	56.221	ENSGAFG00000019183	sarnp	99	57.143	Gambusia_affinis
ENSMUSG00000078427	Sarnp	98	54.338	ENSGACG00000011615	sarnp	99	54.839	Gasterosteus_aculeatus
ENSMUSG00000078427	Sarnp	100	95.714	ENSGGOG00000013217	SARNP	100	95.714	Gorilla_gorilla
ENSMUSG00000078427	Sarnp	100	80.000	ENSGGOG00000041309	-	100	82.381	Gorilla_gorilla
ENSMUSG00000078427	Sarnp	98	58.333	ENSHBUG00000008761	sarnp	99	58.333	Haplochromis_burtoni
ENSMUSG00000078427	Sarnp	100	97.143	ENSHGLG00000016869	SARNP	100	97.143	Heterocephalus_glaber_female
ENSMUSG00000078427	Sarnp	100	97.143	ENSHGLG00100014657	SARNP	100	97.143	Heterocephalus_glaber_male
ENSMUSG00000078427	Sarnp	99	53.488	ENSHCOG00000015510	sarnp	99	54.673	Hippocampus_comes
ENSMUSG00000078427	Sarnp	98	58.654	ENSIPUG00000012503	Sarnp	99	60.766	Ictalurus_punctatus
ENSMUSG00000078427	Sarnp	100	97.143	ENSSTOG00000000283	SARNP	100	97.143	Ictidomys_tridecemlineatus
ENSMUSG00000078427	Sarnp	88	88.462	ENSJJAG00000011057	-	90	82.383	Jaculus_jaculus
ENSMUSG00000078427	Sarnp	100	90.952	ENSJJAG00000001070	-	100	90.952	Jaculus_jaculus
ENSMUSG00000078427	Sarnp	98	57.078	ENSKMAG00000013400	sarnp	99	57.798	Kryptolebias_marmoratus
ENSMUSG00000078427	Sarnp	98	54.930	ENSLBEG00000025038	sarnp	99	56.881	Labrus_bergylta
ENSMUSG00000078427	Sarnp	95	68.342	ENSLACG00000018719	SARNP	88	70.352	Latimeria_chalumnae
ENSMUSG00000078427	Sarnp	84	48.062	ENSLACG00000014810	-	96	44.565	Latimeria_chalumnae
ENSMUSG00000078427	Sarnp	98	65.258	ENSLOCG00000003621	sarnp	98	65.728	Lepisosteus_oculatus
ENSMUSG00000078427	Sarnp	100	97.143	ENSLAFG00000015053	SARNP	100	97.143	Loxodonta_africana
ENSMUSG00000078427	Sarnp	100	95.714	ENSMFAG00000045270	SARNP	100	95.714	Macaca_fascicularis
ENSMUSG00000078427	Sarnp	100	89.048	ENSMFAG00000032419	-	98	89.048	Macaca_fascicularis
ENSMUSG00000078427	Sarnp	100	95.714	ENSMMUG00000006289	-	100	95.714	Macaca_mulatta
ENSMUSG00000078427	Sarnp	100	89.048	ENSMMUG00000037731	-	100	89.048	Macaca_mulatta
ENSMUSG00000078427	Sarnp	100	77.619	ENSMNEG00000030688	-	98	77.619	Macaca_nemestrina
ENSMUSG00000078427	Sarnp	99	87.981	ENSMNEG00000041520	-	97	88.670	Macaca_nemestrina
ENSMUSG00000078427	Sarnp	100	95.714	ENSMNEG00000044633	-	100	95.714	Macaca_nemestrina
ENSMUSG00000078427	Sarnp	95	88.571	ENSMLEG00000038545	-	86	92.143	Mandrillus_leucophaeus
ENSMUSG00000078427	Sarnp	100	85.714	ENSMLEG00000037790	-	98	85.714	Mandrillus_leucophaeus
ENSMUSG00000078427	Sarnp	98	58.019	ENSMAMG00000005942	sarnp	99	58.019	Mastacembelus_armatus
ENSMUSG00000078427	Sarnp	98	58.333	ENSMZEG00005023533	sarnp	99	58.333	Maylandia_zebra
ENSMUSG00000078427	Sarnp	99	84.689	ENSMGAG00000001807	SARNP	99	84.689	Meleagris_gallopavo
ENSMUSG00000078427	Sarnp	100	97.143	ENSMAUG00000005256	-	100	97.143	Mesocricetus_auratus
ENSMUSG00000078427	Sarnp	100	96.190	ENSMICG00000010902	-	100	96.190	Microcebus_murinus
ENSMUSG00000078427	Sarnp	100	98.571	ENSMOCG00000006502	-	100	98.571	Microtus_ochrogaster
ENSMUSG00000078427	Sarnp	99	55.714	ENSMMOG00000013258	sarnp	99	55.714	Mola_mola
ENSMUSG00000078427	Sarnp	95	52.448	ENSMALG00000009106	sarnp	83	56.477	Monopterus_albus
ENSMUSG00000078427	Sarnp	100	100.000	MGP_CAROLIEiJ_G0015958	-	100	100.000	Mus_caroli
ENSMUSG00000078427	Sarnp	97	97.917	MGP_PahariEiJ_G0031126	-	100	98.985	Mus_pahari
ENSMUSG00000078427	Sarnp	100	100.000	MGP_SPRETEiJ_G0016783	-	100	100.000	Mus_spretus
ENSMUSG00000078427	Sarnp	100	96.667	ENSMPUG00000000885	SARNP	100	96.667	Mustela_putorius_furo
ENSMUSG00000078427	Sarnp	97	86.111	ENSMLUG00000003565	SARNP	100	91.018	Myotis_lucifugus
ENSMUSG00000078427	Sarnp	100	96.190	ENSNGAG00000010245	-	100	96.190	Nannospalax_galili
ENSMUSG00000078427	Sarnp	97	90.278	ENSNLEG00000017599	-	99	90.710	Nomascus_leucogenys
ENSMUSG00000078427	Sarnp	100	85.238	ENSMEUG00000014879	SARNP	100	85.238	Notamacropus_eugenii
ENSMUSG00000078427	Sarnp	100	74.762	ENSOPRG00000007733	SARNP	100	74.762	Ochotona_princeps
ENSMUSG00000078427	Sarnp	100	96.667	ENSODEG00000004608	-	100	96.667	Octodon_degus
ENSMUSG00000078427	Sarnp	100	78.095	ENSODEG00000012047	-	100	80.000	Octodon_degus
ENSMUSG00000078427	Sarnp	98	58.796	ENSONIG00000016523	sarnp	99	58.796	Oreochromis_niloticus
ENSMUSG00000078427	Sarnp	95	85.222	ENSOANG00000002882	SARNP	100	85.222	Ornithorhynchus_anatinus
ENSMUSG00000078427	Sarnp	98	93.720	ENSOCUG00000010117	SARNP	99	93.720	Oryctolagus_cuniculus
ENSMUSG00000078427	Sarnp	98	59.809	ENSORLG00000029565	sarnp	88	59.809	Oryzias_latipes
ENSMUSG00000078427	Sarnp	98	59.809	ENSORLG00015021649	sarnp	88	59.809	Oryzias_latipes_hsok
ENSMUSG00000078427	Sarnp	98	59.330	ENSOMEG00000014699	sarnp	99	59.330	Oryzias_melastigma
ENSMUSG00000078427	Sarnp	90	88.806	ENSOGAG00000001693	SARNP	94	93.631	Otolemur_garnettii
ENSMUSG00000078427	Sarnp	100	95.714	ENSOARG00000011218	SARNP	100	95.714	Ovis_aries
ENSMUSG00000078427	Sarnp	100	76.190	ENSPPAG00000042587	-	98	78.571	Pan_paniscus
ENSMUSG00000078427	Sarnp	100	95.714	ENSPPAG00000039513	SARNP	100	95.714	Pan_paniscus
ENSMUSG00000078427	Sarnp	100	95.714	ENSPPRG00000020704	SARNP	100	95.714	Panthera_pardus
ENSMUSG00000078427	Sarnp	100	95.714	ENSPTRG00000029747	SARNP	100	95.714	Pan_troglodytes
ENSMUSG00000078427	Sarnp	100	76.190	ENSPTRG00000046696	-	98	78.571	Pan_troglodytes
ENSMUSG00000078427	Sarnp	100	87.143	ENSPANG00000006001	-	98	87.143	Papio_anubis
ENSMUSG00000078427	Sarnp	100	95.238	ENSPANG00000013149	-	100	95.238	Papio_anubis
ENSMUSG00000078427	Sarnp	98	61.792	ENSPKIG00000002212	sarnp	99	60.829	Paramormyrops_kingsleyae
ENSMUSG00000078427	Sarnp	99	82.609	ENSPSIG00000002998	SARNP	98	83.415	Pelodiscus_sinensis
ENSMUSG00000078427	Sarnp	100	98.095	ENSPEMG00000000923	-	100	98.095	Peromyscus_maniculatus_bairdii
ENSMUSG00000078427	Sarnp	98	50.233	ENSPMAG00000009808	sarnp	95	51.131	Petromyzon_marinus
ENSMUSG00000078427	Sarnp	95	92.965	ENSPCIG00000024663	SARNP	99	92.965	Phascolarctos_cinereus
ENSMUSG00000078427	Sarnp	98	56.682	ENSPFOG00000013517	sarnp	99	58.257	Poecilia_formosa
ENSMUSG00000078427	Sarnp	98	56.019	ENSPLAG00000017096	sarnp	99	58.525	Poecilia_latipinna
ENSMUSG00000078427	Sarnp	98	56.019	ENSPMEG00000014306	sarnp	99	58.525	Poecilia_mexicana
ENSMUSG00000078427	Sarnp	97	50.000	ENSPREG00000019598	sarnp	82	50.000	Poecilia_reticulata
ENSMUSG00000078427	Sarnp	100	95.714	ENSPPYG00000004630	SARNP	100	95.714	Pongo_abelii
ENSMUSG00000078427	Sarnp	98	59.330	ENSPNAG00000000975	sarnp	99	59.330	Pygocentrus_nattereri
ENSMUSG00000078427	Sarnp	100	98.571	ENSRNOG00000030520	Sarnp	100	98.571	Rattus_norvegicus
ENSMUSG00000078427	Sarnp	95	93.467	ENSRBIG00000019503	-	96	93.467	Rhinopithecus_bieti
ENSMUSG00000078427	Sarnp	100	84.977	ENSRBIG00000026928	-	98	85.446	Rhinopithecus_bieti
ENSMUSG00000078427	Sarnp	100	95.238	ENSRBIG00000039295	-	100	95.238	Rhinopithecus_bieti
ENSMUSG00000078427	Sarnp	100	72.381	ENSRBIG00000037388	-	98	73.333	Rhinopithecus_bieti
ENSMUSG00000078427	Sarnp	100	95.238	ENSRROG00000035177	-	100	95.238	Rhinopithecus_roxellana
ENSMUSG00000078427	Sarnp	100	84.977	ENSRROG00000044575	-	98	85.446	Rhinopithecus_roxellana
ENSMUSG00000078427	Sarnp	100	95.714	ENSSBOG00000035337	-	100	95.714	Saimiri_boliviensis_boliviensis
ENSMUSG00000078427	Sarnp	97	84.722	ENSSBOG00000022787	-	97	78.095	Saimiri_boliviensis_boliviensis
ENSMUSG00000078427	Sarnp	100	91.905	ENSSBOG00000028635	-	98	91.905	Saimiri_boliviensis_boliviensis
ENSMUSG00000078427	Sarnp	100	93.810	ENSSHAG00000008865	SARNP	100	93.810	Sarcophilus_harrisii
ENSMUSG00000078427	Sarnp	98	56.277	ENSSFOG00015020709	sarnp	99	63.014	Scleropages_formosus
ENSMUSG00000078427	Sarnp	98	56.667	ENSSMAG00000018587	sarnp	99	56.667	Scophthalmus_maximus
ENSMUSG00000078427	Sarnp	98	60.952	ENSSDUG00000005484	sarnp	99	60.952	Seriola_dumerili
ENSMUSG00000078427	Sarnp	98	60.952	ENSSLDG00000003775	sarnp	99	60.952	Seriola_lalandi_dorsalis
ENSMUSG00000078427	Sarnp	100	68.095	ENSSARG00000004858	SARNP	100	68.095	Sorex_araneus
ENSMUSG00000078427	Sarnp	95	65.842	ENSSPUG00000015135	SARNP	96	65.842	Sphenodon_punctatus
ENSMUSG00000078427	Sarnp	100	96.190	ENSSSCG00000000364	SARNP	100	96.190	Sus_scrofa
ENSMUSG00000078427	Sarnp	97	73.427	ENSTGUG00000016126	SARNP	100	76.142	Taeniopygia_guttata
ENSMUSG00000078427	Sarnp	99	54.378	ENSTRUG00000009497	-	99	57.143	Takifugu_rubripes
ENSMUSG00000078427	Sarnp	99	54.630	ENSTNIG00000012432	sarnp	99	54.630	Tetraodon_nigroviridis
ENSMUSG00000078427	Sarnp	100	89.524	ENSTTRG00000009735	SARNP	100	89.524	Tursiops_truncatus
ENSMUSG00000078427	Sarnp	94	84.892	ENSUAMG00000015093	-	86	88.554	Ursus_americanus
ENSMUSG00000078427	Sarnp	94	96.447	ENSVPAG00000009515	SARNP	100	96.447	Vicugna_pacos
ENSMUSG00000078427	Sarnp	100	96.190	ENSVVUG00000022779	SARNP	100	96.190	Vulpes_vulpes
ENSMUSG00000078427	Sarnp	99	73.913	ENSXETG00000024657	sarnp	99	73.913	Xenopus_tropicalis
ENSMUSG00000078427	Sarnp	98	56.682	ENSXMAG00000009356	sarnp	99	57.604	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	18480465.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	18480465.	IMP	Process
GO:0000346	transcription export complex	-	ISO	Component
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	18480465.	IDA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	18480465.	IDA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	18480465.	IMP	Function
GO:0005515	protein binding	15798186.	IPI	Function
GO:0005634	nucleus	18480465.	IDA	Component
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008022	protein C-terminus binding	15798186.	IPI	Function
GO:0016607	nuclear speck	-	ISO	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0050733	RS domain binding	15798186.	IPI	Function