EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMUSG00000078580 (Gene tree)
Gene ID: 101604
Gene Symbol: E430018J23Rik
Alias: -
Full Name: RIKEN cDNA E430018J23 gene
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 3957 bases
Position: chr7:127389673-127393629
Accession: 2141981
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	1	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	2	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	3	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	4	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	5	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	6	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	7	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	8	9
ENSMUSP00000126288	zf-C2H2	PF00096.26	2.3e-48	9	9
ENSMUSP00000126288	zf-met	PF12874.7	8.9e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000074249	-	2063	-	ENSMUSP00000073867	149 (aa)	-	D3Z6C2
ENSMUST00000106303	-	576	-	ENSMUSP00000101910	130 (aa)	-	D3Z3V4
ENSMUST00000165495	-	3324	XM_006507163	ENSMUSP00000126288	461 (aa)	XP_006507226	E9PZQ8

Gene Model

Click here to download ENSMUSG00000078580's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000078580	E430018J23Rik	97	73.885	ENSMUSG00000030823	9130019O22Rik	100	73.885
ENSMUSG00000078580	E430018J23Rik	86	35.381	ENSMUSG00000055835	Zfp1	99	34.684
ENSMUSG00000078580	E430018J23Rik	89	47.895	ENSMUSG00000034800	Zfp661	94	42.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078580	E430018J23Rik	93	79.487	MGP_CAROLIEiJ_G0030501	Zfp764	100	79.487	Mus_caroli
ENSMUSG00000078580	E430018J23Rik	99	87.118	MGP_PahariEiJ_G0013709	-	100	87.118	Mus_pahari
ENSMUSG00000078580	E430018J23Rik	99	87.118	MGP_PahariEiJ_G0013708	-	100	87.118	Mus_pahari
ENSMUSG00000078580	E430018J23Rik	72	96.108	MGP_SPRETEiJ_G0031614	-	100	96.108	Mus_spretus