EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000078622 (Gene tree)
Gene ID: 67163
Gene Symbol: Ccdc47
Alias: 2610204L23Rik|asp4|calumin
Full Name: coiled-coil domain containing 47
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 18937
Position: chr11: 106197408-106216344
Accession: 1914413
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000153982	-	922	-	-	- (aa)	-	-
ENSMUST00000106865	-	704	-	ENSMUSP00000102478	167 (aa)	-	Q9D024
ENSMUST00000137915	-	462	-	ENSMUSP00000117127	138 (aa)	-	B1AR93
ENSMUST00000002043	-	5193	-	ENSMUSP00000002043	483 (aa)	-	Q9D024
ENSMUST00000125383	-	1003	-	ENSMUSP00000122736	224 (aa)	-	F7C265

Gene Model

Click here to download ENSMUSG00000078622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078622's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078622	Ccdc47	100	99.401	ENSG00000108588	CCDC47	100	97.930	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005509	calcium ion binding	21873635.	IBA	Function
GO:0005509	calcium ion binding	17204322.	IDA	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	17204322.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005791	rough endoplasmic reticulum	25009997.	IDA	Component
GO:0006983	ER overload response	17204322.	IMP	Process
GO:0007029	endoplasmic reticulum organization	25009997.	IMP	Process
GO:0009791	post-embryonic development	17204322.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0030433	ubiquitin-dependent ERAD pathway	25009997.	IMP	Process
GO:0055074	calcium ion homeostasis	17204322.	IMP	Process