EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000078671 (Gene tree)
Gene ID: 244059
Gene Symbol: Chd2
Alias: 2810013C04Rik|2810040A01Rik|5630401D06Rik
Full Name: chromodomain helicase DNA binding protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 115193 bases
Position: chr7:73426638-73541830
Accession: 2448567
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000126352	ResIII	PF04851.15	1.4e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000173785	-	487	-	ENSMUSP00000133714	163 (aa)	-	G3UXJ4
ENSMUST00000206665	-	1632	-	-	- (aa)	-	-
ENSMUST00000200218	-	1387	-	-	- (aa)	-	-
ENSMUST00000200492	-	1196	-	-	- (aa)	-	-
ENSMUST00000200423	-	339	-	ENSMUSP00000142885	113 (aa)	-	A0A0G2JES5
ENSMUST00000208458	-	745	-	ENSMUSP00000147180	34 (aa)	-	A0A140LJE4
ENSMUST00000169922	-	9085	-	ENSMUSP00000126352	1827 (aa)	-	E9PZM4
ENSMUST00000026895	-	1571	-	ENSMUSP00000026895	333 (aa)	-	F7CDZ7
ENSMUST00000181971	-	667	-	ENSMUSP00000137985	35 (aa)	-	M0QWT0
ENSMUST00000172704	-	748	-	ENSMUSP00000134484	178 (aa)	-	G3UZG2
ENSMUST00000197642	-	896	-	ENSMUSP00000142408	57 (aa)	-	A0A0G2JDK8
ENSMUST00000199601	-	558	-	ENSMUSP00000143203	74 (aa)	-	A0A0G2JFK1
ENSMUST00000198225	-	392	-	-	- (aa)	-	-
ENSMUST00000197800	-	3741	-	-	- (aa)	-	-
ENSMUST00000038366	-	755	-	-	- (aa)	-	-
ENSMUST00000199641	-	360	-	ENSMUSP00000142848	120 (aa)	-	A0A0G2JEP1
ENSMUST00000199831	-	582	-	-	- (aa)	-	-
ENSMUST00000199809	-	5289	-	ENSMUSP00000142959	220 (aa)	-	A0A0G2JEZ3

Gene Model

Click here to download ENSMUSG00000078671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000078671	Chd2	63	32.583	ENSMUSG00000057133	Chd6	61	37.625
ENSMUSG00000078671	Chd2	88	60.875	ENSMUSG00000023852	Chd1	96	64.872

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078671	Chd2	100	96.444	ENSG00000173575	CHD2	100	97.143	Homo_sapiens
ENSMUSG00000078671	Chd2	96	72.732	ENSAPOG00000008913	chd2	100	71.897	Acanthochromis_polyacanthus
ENSMUSG00000078671	Chd2	63	97.396	ENSAMEG00000010805	-	100	97.396	Ailuropoda_melanoleuca
ENSMUSG00000078671	Chd2	96	70.404	ENSAOCG00000016332	chd2	100	69.661	Amphiprion_ocellaris
ENSMUSG00000078671	Chd2	96	72.702	ENSAPEG00000016676	chd2	100	71.867	Amphiprion_percula
ENSMUSG00000078671	Chd2	96	72.172	ENSATEG00000005246	chd2	100	71.498	Anabas_testudineus
ENSMUSG00000078671	Chd2	100	87.011	ENSAPLG00000011141	-	100	87.011	Anas_platyrhynchos
ENSMUSG00000078671	Chd2	98	80.507	ENSACAG00000000088	-	99	79.859	Anolis_carolinensis
ENSMUSG00000078671	Chd2	100	96.442	ENSANAG00000024017	-	100	96.442	Aotus_nancymaae
ENSMUSG00000078671	Chd2	100	96.388	ENSCJAG00000020444	-	100	96.388	Callithrix_jacchus
ENSMUSG00000078671	Chd2	99	96.403	ENSCAFG00000010998	CHD2	100	96.882	Canis_familiaris
ENSMUSG00000078671	Chd2	99	93.740	ENSCHIG00000022261	-	99	93.740	Capra_hircus
ENSMUSG00000078671	Chd2	100	96.333	ENSTSYG00000003272	-	100	96.333	Carlito_syrichta
ENSMUSG00000078671	Chd2	93	95.458	ENSCPOG00000005800	-	100	95.458	Cavia_porcellus
ENSMUSG00000078671	Chd2	100	96.442	ENSCCAG00000035304	-	100	96.442	Cebus_capucinus
ENSMUSG00000078671	Chd2	100	96.389	ENSCATG00000031069	-	100	96.389	Cercocebus_atys
ENSMUSG00000078671	Chd2	100	95.460	ENSCLAG00000016269	-	100	95.460	Chinchilla_lanigera
ENSMUSG00000078671	Chd2	100	96.444	ENSCSAG00000017007	-	100	96.444	Chlorocebus_sabaeus
ENSMUSG00000078671	Chd2	78	94.545	ENSCHOG00000000608	-	81	94.545	Choloepus_hoffmanni
ENSMUSG00000078671	Chd2	81	87.289	ENSCPBG00000018049	-	95	91.325	Chrysemys_picta_bellii
ENSMUSG00000078671	Chd2	74	54.124	ENSCSAVG00000007580	-	93	60.000	Ciona_savignyi
ENSMUSG00000078671	Chd2	100	96.335	ENSCANG00000038126	-	100	96.335	Colobus_angolensis_palliatus
ENSMUSG00000078671	Chd2	100	97.756	ENSCGRG00001006649	Chd2	100	97.756	Cricetulus_griseus_chok1gshd
ENSMUSG00000078671	Chd2	100	97.756	ENSCGRG00000018154	Chd2	100	97.756	Cricetulus_griseus_crigri
ENSMUSG00000078671	Chd2	98	63.904	ENSCSEG00000003646	chd2	94	65.785	Cynoglossus_semilaevis
ENSMUSG00000078671	Chd2	100	63.929	ENSCVAG00000002427	chd2	99	71.612	Cyprinodon_variegatus
ENSMUSG00000078671	Chd2	96	70.349	ENSDARG00000060687	chd2	100	71.717	Danio_rerio
ENSMUSG00000078671	Chd2	99	95.624	ENSDNOG00000009796	-	100	95.624	Dasypus_novemcinctus
ENSMUSG00000078671	Chd2	50	75.532	ENSEBUG00000014994	chd2	83	75.532	Eptatretus_burgeri
ENSMUSG00000078671	Chd2	99	96.073	ENSEASG00005015526	-	99	97.938	Equus_asinus_asinus
ENSMUSG00000078671	Chd2	95	71.946	ENSELUG00000017981	chd2	100	70.478	Esox_lucius
ENSMUSG00000078671	Chd2	100	88.303	ENSFALG00000010369	-	100	88.303	Ficedula_albicollis
ENSMUSG00000078671	Chd2	100	95.569	ENSFDAG00000020651	-	100	95.569	Fukomys_damarensis
ENSMUSG00000078671	Chd2	88	71.429	ENSFHEG00000002119	chd2	99	70.102	Fundulus_heteroclitus
ENSMUSG00000078671	Chd2	94	69.035	ENSGMOG00000002890	chd2	99	70.035	Gadus_morhua
ENSMUSG00000078671	Chd2	100	87.242	ENSGALG00000006949	CHD2	100	87.242	Gallus_gallus
ENSMUSG00000078671	Chd2	96	70.260	ENSGAFG00000001905	chd2	98	69.737	Gambusia_affinis
ENSMUSG00000078671	Chd2	91	70.719	ENSGACG00000013246	chd2	99	69.908	Gasterosteus_aculeatus
ENSMUSG00000078671	Chd2	80	89.580	ENSGAGG00000013176	-	95	97.753	Gopherus_agassizii
ENSMUSG00000078671	Chd2	100	95.022	ENSGGOG00000015677	CHD2	100	95.022	Gorilla_gorilla
ENSMUSG00000078671	Chd2	96	72.768	ENSHBUG00000017947	chd2	100	71.959	Haplochromis_burtoni
ENSMUSG00000078671	Chd2	100	95.350	ENSHGLG00000004435	CHD2	100	95.350	Heterocephalus_glaber_female
ENSMUSG00000078671	Chd2	100	94.694	ENSHGLG00100016376	-	100	94.694	Heterocephalus_glaber_male
ENSMUSG00000078671	Chd2	98	67.914	ENSHCOG00000008855	chd2	99	66.739	Hippocampus_comes
ENSMUSG00000078671	Chd2	71	74.355	ENSIPUG00000000488	chd2	100	68.743	Ictalurus_punctatus
ENSMUSG00000078671	Chd2	100	96.335	ENSSTOG00000001270	-	100	96.335	Ictidomys_tridecemlineatus
ENSMUSG00000078671	Chd2	100	96.004	ENSJJAG00000000213	Chd2	100	96.004	Jaculus_jaculus
ENSMUSG00000078671	Chd2	84	72.751	ENSKMAG00000015849	chd2	99	73.269	Kryptolebias_marmoratus
ENSMUSG00000078671	Chd2	75	95.939	ENSLAFG00000016885	-	100	95.939	Loxodonta_africana
ENSMUSG00000078671	Chd2	100	96.499	ENSMFAG00000033343	-	100	96.499	Macaca_fascicularis
ENSMUSG00000078671	Chd2	100	96.499	ENSMMUG00000011782	-	100	96.499	Macaca_mulatta
ENSMUSG00000078671	Chd2	100	96.120	ENSMNEG00000036875	-	100	96.120	Macaca_nemestrina
ENSMUSG00000078671	Chd2	100	96.444	ENSMLEG00000035026	-	100	96.444	Mandrillus_leucophaeus
ENSMUSG00000078671	Chd2	96	72.067	ENSMAMG00000009082	chd2	100	70.730	Mastacembelus_armatus
ENSMUSG00000078671	Chd2	99	87.260	ENSMGAG00000008966	-	99	87.260	Meleagris_gallopavo
ENSMUSG00000078671	Chd2	100	94.745	ENSMICG00000000332	-	100	94.745	Microcebus_murinus
ENSMUSG00000078671	Chd2	100	97.538	ENSMOCG00000015124	Chd2	100	97.538	Microtus_ochrogaster
ENSMUSG00000078671	Chd2	100	90.800	ENSMODG00000013158	-	100	90.964	Monodelphis_domestica
ENSMUSG00000078671	Chd2	100	99.398	MGP_CAROLIEiJ_G0029860	Chd2	100	99.398	Mus_caroli
ENSMUSG00000078671	Chd2	100	98.796	MGP_PahariEiJ_G0013082	Chd2	100	98.796	Mus_pahari
ENSMUSG00000078671	Chd2	100	99.891	MGP_SPRETEiJ_G0030962	Chd2	100	99.891	Mus_spretus
ENSMUSG00000078671	Chd2	100	96.333	ENSMPUG00000017577	-	100	96.333	Mustela_putorius_furo
ENSMUSG00000078671	Chd2	100	93.431	ENSMLUG00000009292	-	100	93.431	Myotis_lucifugus
ENSMUSG00000078671	Chd2	100	96.552	ENSNGAG00000010792	Chd2	100	96.552	Nannospalax_galili
ENSMUSG00000078671	Chd2	100	93.873	ENSNLEG00000012349	-	100	93.654	Nomascus_leucogenys
ENSMUSG00000078671	Chd2	71	88.390	ENSMEUG00000001522	-	76	90.040	Notamacropus_eugenii
ENSMUSG00000078671	Chd2	100	94.694	ENSODEG00000016028	-	100	94.694	Octodon_degus
ENSMUSG00000078671	Chd2	96	72.630	ENSONIG00000015136	chd2	100	71.935	Oreochromis_niloticus
ENSMUSG00000078671	Chd2	88	81.784	ENSOANG00000004385	-	100	80.964	Ornithorhynchus_anatinus
ENSMUSG00000078671	Chd2	100	85.753	ENSOCUG00000001628	-	99	96.408	Oryctolagus_cuniculus
ENSMUSG00000078671	Chd2	96	72.007	ENSORLG00000008403	chd2	100	70.768	Oryzias_latipes
ENSMUSG00000078671	Chd2	96	72.200	ENSORLG00020004138	chd2	100	70.952	Oryzias_latipes_hni
ENSMUSG00000078671	Chd2	100	64.086	ENSOMEG00000005831	chd2	100	64.855	Oryzias_melastigma
ENSMUSG00000078671	Chd2	100	94.147	ENSOGAG00000010399	-	100	94.147	Otolemur_garnettii
ENSMUSG00000078671	Chd2	99	95.364	ENSOARG00000010343	-	100	94.201	Ovis_aries
ENSMUSG00000078671	Chd2	100	95.467	ENSPPAG00000030381	-	100	95.467	Pan_paniscus
ENSMUSG00000078671	Chd2	100	96.444	ENSPTRG00000007478	CHD2	100	96.444	Pan_troglodytes
ENSMUSG00000078671	Chd2	100	93.545	ENSPANG00000033355	-	100	93.545	Papio_anubis
ENSMUSG00000078671	Chd2	99	70.291	ENSPKIG00000000495	chd2	100	71.899	Paramormyrops_kingsleyae
ENSMUSG00000078671	Chd2	84	69.769	ENSPMGG00000009941	chd2	99	70.263	Periophthalmus_magnuspinnatus
ENSMUSG00000078671	Chd2	100	97.701	ENSPEMG00000019507	Chd2	100	97.701	Peromyscus_maniculatus_bairdii
ENSMUSG00000078671	Chd2	91	91.557	ENSPCIG00000009417	-	100	90.580	Phascolarctos_cinereus
ENSMUSG00000078671	Chd2	96	72.707	ENSPFOG00000007050	chd2	100	71.828	Poecilia_formosa
ENSMUSG00000078671	Chd2	96	72.987	ENSPLAG00000005067	chd2	100	72.097	Poecilia_latipinna
ENSMUSG00000078671	Chd2	96	72.763	ENSPMEG00000019628	chd2	100	71.882	Poecilia_mexicana
ENSMUSG00000078671	Chd2	100	95.131	ENSPPYG00000006799	-	100	95.131	Pongo_abelii
ENSMUSG00000078671	Chd2	100	96.389	ENSPCOG00000028084	-	100	96.389	Propithecus_coquereli
ENSMUSG00000078671	Chd2	95	69.737	ENSPNAG00000016719	chd2	74	72.866	Pygocentrus_nattereri
ENSMUSG00000078671	Chd2	100	97.865	ENSRNOG00000012716	Chd2	100	97.865	Rattus_norvegicus
ENSMUSG00000078671	Chd2	100	94.369	ENSRBIG00000036875	-	100	94.369	Rhinopithecus_bieti
ENSMUSG00000078671	Chd2	100	96.444	ENSRROG00000041087	-	100	96.444	Rhinopithecus_roxellana
ENSMUSG00000078671	Chd2	100	96.497	ENSSBOG00000023754	-	100	96.497	Saimiri_boliviensis_boliviensis
ENSMUSG00000078671	Chd2	100	90.909	ENSSHAG00000012513	-	100	91.127	Sarcophilus_harrisii
ENSMUSG00000078671	Chd2	100	73.100	ENSSFOG00015023759	chd2	100	72.884	Scleropages_formosus
ENSMUSG00000078671	Chd2	96	71.308	ENSSMAG00000001726	chd2	100	70.209	Scophthalmus_maximus
ENSMUSG00000078671	Chd2	96	70.878	ENSSLDG00000001146	chd2	100	70.458	Seriola_lalandi_dorsalis
ENSMUSG00000078671	Chd2	77	95.000	ENSSARG00000014112	-	82	95.000	Sorex_araneus
ENSMUSG00000078671	Chd2	99	83.232	ENSSPUG00000011266	-	99	83.205	Sphenodon_punctatus
ENSMUSG00000078671	Chd2	96	71.437	ENSSPAG00000016452	chd2	100	70.840	Stegastes_partitus
ENSMUSG00000078671	Chd2	100	96.225	ENSSSCG00000002266	-	100	96.395	Sus_scrofa
ENSMUSG00000078671	Chd2	100	88.107	ENSTGUG00000008540	-	100	88.107	Taeniopygia_guttata
ENSMUSG00000078671	Chd2	89	68.916	ENSTRUG00000008842	chd2	92	68.353	Takifugu_rubripes
ENSMUSG00000078671	Chd2	86	73.398	ENSTNIG00000010760	chd2	98	72.951	Tetraodon_nigroviridis
ENSMUSG00000078671	Chd2	77	96.035	ENSTBEG00000017730	-	83	96.035	Tupaia_belangeri
ENSMUSG00000078671	Chd2	96	93.636	ENSTTRG00000000430	-	90	95.120	Tursiops_truncatus
ENSMUSG00000078671	Chd2	100	93.760	ENSUMAG00000000083	-	100	93.158	Ursus_maritimus
ENSMUSG00000078671	Chd2	83	97.292	ENSVPAG00000009645	-	86	97.292	Vicugna_pacos
ENSMUSG00000078671	Chd2	89	74.656	ENSXETG00000024129	chd2	73	81.240	Xenopus_tropicalis
ENSMUSG00000078671	Chd2	96	69.548	ENSXCOG00000020255	chd2	100	69.319	Xiphophorus_couchianus
ENSMUSG00000078671	Chd2	96	73.053	ENSXMAG00000002707	chd2	100	72.013	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	22569126.	IMP	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	22569126.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	22569126.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	19137022.	IMP	Process
GO:0007517	muscle organ development	22569126.	IMP	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042393	histone binding	22569126.	IDA	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0060218	hematopoietic stem cell differentiation	19137022.	IMP	Process