EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000078676 (Gene tree)
Gene ID: 192160
Gene Symbol: Casc3
Alias: Btz|Mln51
Full Name: cancer susceptibility candidate 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 28910 bases
Position: chr11:98804905-98833814
Accession: 2179723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000017384	Btz	PF09405.10	2.5e-23	1	1
ENSMUSP00000130926	Btz	PF09405.10	2.5e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000017384	-	3963	-	ENSMUSP00000017384	698 (aa)	-	Q8K3W3
ENSMUST00000144220	-	368	-	-	- (aa)	-	-
ENSMUST00000147065	-	605	-	-	- (aa)	-	-
ENSMUST00000169695	-	3741	-	ENSMUSP00000130926	698 (aa)	-	Q8K3W3

Gene Model

Click here to download ENSMUSG00000078676's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078676's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078676	Casc3	100	89.189	ENSG00000108349	CASC3	100	90.185	Homo_sapiens
ENSMUSG00000078676	Casc3	100	90.612	ENSAMEG00000007764	CASC3	100	91.038	Ailuropoda_melanoleuca
ENSMUSG00000078676	Casc3	78	51.878	ENSACIG00000000720	casc3	83	51.852	Amphilophus_citrinellus
ENSMUSG00000078676	Casc3	75	54.369	ENSAOCG00000016676	casc3	61	62.147	Amphiprion_ocellaris
ENSMUSG00000078676	Casc3	75	54.369	ENSAPEG00000006787	casc3	61	62.147	Amphiprion_percula
ENSMUSG00000078676	Casc3	74	56.051	ENSATEG00000017196	casc3	70	54.762	Anabas_testudineus
ENSMUSG00000078676	Casc3	99	65.284	ENSACAG00000002674	CASC3	99	66.113	Anolis_carolinensis
ENSMUSG00000078676	Casc3	65	95.238	ENSANAG00000031954	-	100	95.238	Aotus_nancymaae
ENSMUSG00000078676	Casc3	99	79.161	ENSANAG00000034820	-	99	78.684	Aotus_nancymaae
ENSMUSG00000078676	Casc3	100	90.185	ENSBTAG00000006250	CASC3	100	90.185	Bos_taurus
ENSMUSG00000078676	Casc3	100	88.193	ENSCJAG00000016032	CASC3	100	88.620	Callithrix_jacchus
ENSMUSG00000078676	Casc3	100	90.043	ENSCAFG00000016141	CASC3	100	91.038	Canis_familiaris
ENSMUSG00000078676	Casc3	100	89.205	ENSCAFG00020018882	CASC3	100	91.749	Canis_lupus_dingo
ENSMUSG00000078676	Casc3	100	89.189	ENSCHIG00000006338	CASC3	100	89.189	Capra_hircus
ENSMUSG00000078676	Casc3	100	81.792	ENSTSYG00000002975	CASC3	89	91.493	Carlito_syrichta
ENSMUSG00000078676	Casc3	88	85.065	ENSCAPG00000010514	CASC3	100	86.851	Cavia_aperea
ENSMUSG00000078676	Casc3	100	84.473	ENSCPOG00000015139	CASC3	100	85.897	Cavia_porcellus
ENSMUSG00000078676	Casc3	100	86.222	ENSCCAG00000033620	CASC3	100	89.489	Cebus_capucinus
ENSMUSG00000078676	Casc3	100	90.199	ENSCATG00000033593	CASC3	100	90.767	Cercocebus_atys
ENSMUSG00000078676	Casc3	100	86.752	ENSCLAG00000013730	CASC3	100	87.464	Chinchilla_lanigera
ENSMUSG00000078676	Casc3	100	90.199	ENSCSAG00000002777	CASC3	100	90.767	Chlorocebus_sabaeus
ENSMUSG00000078676	Casc3	99	70.927	ENSCPBG00000004750	CASC3	99	72.096	Chrysemys_picta_bellii
ENSMUSG00000078676	Casc3	100	90.057	ENSCANG00000008814	CASC3	100	90.625	Colobus_angolensis_palliatus
ENSMUSG00000078676	Casc3	100	94.009	ENSCGRG00001014706	Casc3	100	94.294	Cricetulus_griseus_chok1gshd
ENSMUSG00000078676	Casc3	100	86.448	ENSCGRG00000001952	Casc3	96	93.891	Cricetulus_griseus_crigri
ENSMUSG00000078676	Casc3	82	52.848	ENSCSEG00000010047	casc3	79	51.057	Cynoglossus_semilaevis
ENSMUSG00000078676	Casc3	84	58.385	ENSDARG00000029911	casc3	72	58.607	Danio_rerio
ENSMUSG00000078676	Casc3	100	89.616	ENSDNOG00000017249	CASC3	96	90.043	Dasypus_novemcinctus
ENSMUSG00000078676	Casc3	100	82.219	ENSETEG00000013720	CASC3	100	82.361	Echinops_telfairi
ENSMUSG00000078676	Casc3	88	37.445	ENSEBUG00000010654	casc3	88	36.405	Eptatretus_burgeri
ENSMUSG00000078676	Casc3	100	88.936	ENSEASG00005002909	CASC3	100	91.503	Equus_asinus_asinus
ENSMUSG00000078676	Casc3	100	90.043	ENSECAG00000019947	CASC3	88	90.469	Equus_caballus
ENSMUSG00000078676	Casc3	73	83.594	ENSEEUG00000014253	CASC3	100	84.375	Erinaceus_europaeus
ENSMUSG00000078676	Casc3	100	91.038	ENSFCAG00000014998	CASC3	100	91.465	Felis_catus
ENSMUSG00000078676	Casc3	88	70.690	ENSFALG00000000412	CASC3	98	71.181	Ficedula_albicollis
ENSMUSG00000078676	Casc3	93	83.562	ENSFDAG00000020696	CASC3	100	83.866	Fukomys_damarensis
ENSMUSG00000078676	Casc3	74	55.507	ENSFHEG00000015793	casc3	72	56.000	Fundulus_heteroclitus
ENSMUSG00000078676	Casc3	90	73.701	ENSGALG00000031813	CASC3	99	68.946	Gallus_gallus
ENSMUSG00000078676	Casc3	73	52.614	ENSGAFG00000017148	casc3	54	61.850	Gambusia_affinis
ENSMUSG00000078676	Casc3	89	73.609	ENSGAGG00000008432	CASC3	94	75.684	Gopherus_agassizii
ENSMUSG00000078676	Casc3	100	89.189	ENSGGOG00000005067	CASC3	100	90.043	Gorilla_gorilla
ENSMUSG00000078676	Casc3	100	87.055	ENSHGLG00000012117	CASC3	100	87.340	Heterocephalus_glaber_female
ENSMUSG00000078676	Casc3	89	86.741	ENSHGLG00100002268	CASC3	99	87.159	Heterocephalus_glaber_male
ENSMUSG00000078676	Casc3	100	90.185	ENSSTOG00000006374	CASC3	100	90.754	Ictidomys_tridecemlineatus
ENSMUSG00000078676	Casc3	100	87.216	ENSJJAG00000023525	Casc3	100	89.205	Jaculus_jaculus
ENSMUSG00000078676	Casc3	66	64.286	ENSKMAG00000019507	casc3	81	49.824	Kryptolebias_marmoratus
ENSMUSG00000078676	Casc3	84	48.232	ENSLBEG00000005435	casc3	66	61.236	Labrus_bergylta
ENSMUSG00000078676	Casc3	87	58.703	ENSLACG00000013200	CASC3	89	58.372	Latimeria_chalumnae
ENSMUSG00000078676	Casc3	69	73.913	ENSLOCG00000013518	casc3	65	71.014	Lepisosteus_oculatus
ENSMUSG00000078676	Casc3	100	88.336	ENSLAFG00000000606	CASC3	100	89.189	Loxodonta_africana
ENSMUSG00000078676	Casc3	100	90.199	ENSMFAG00000041496	CASC3	100	90.767	Macaca_fascicularis
ENSMUSG00000078676	Casc3	100	90.199	ENSMMUG00000045187	CASC3	100	90.767	Macaca_mulatta
ENSMUSG00000078676	Casc3	89	89.952	ENSMLEG00000029049	CASC3	98	90.545	Mandrillus_leucophaeus
ENSMUSG00000078676	Casc3	82	52.229	ENSMAMG00000005235	casc3	76	55.118	Mastacembelus_armatus
ENSMUSG00000078676	Casc3	86	72.488	ENSMGAG00000013247	CASC3	99	71.173	Meleagris_gallopavo
ENSMUSG00000078676	Casc3	71	93.600	ENSMAUG00000006023	Casc3	80	93.227	Mesocricetus_auratus
ENSMUSG00000078676	Casc3	100	88.478	ENSMICG00000003321	CASC3	100	90.185	Microcebus_murinus
ENSMUSG00000078676	Casc3	100	94.009	ENSMOCG00000013644	Casc3	100	93.295	Microtus_ochrogaster
ENSMUSG00000078676	Casc3	100	76.496	ENSMODG00000013044	CASC3	92	78.490	Monodelphis_domestica
ENSMUSG00000078676	Casc3	78	48.188	ENSMALG00000019771	casc3	83	49.186	Monopterus_albus
ENSMUSG00000078676	Casc3	100	98.997	MGP_CAROLIEiJ_G0017099	Casc3	100	98.997	Mus_caroli
ENSMUSG00000078676	Casc3	100	99.427	MGP_SPRETEiJ_G0017943	Casc3	100	99.427	Mus_spretus
ENSMUSG00000078676	Casc3	100	89.900	ENSMPUG00000014903	CASC3	100	90.327	Mustela_putorius_furo
ENSMUSG00000078676	Casc3	100	86.364	ENSMLUG00000010520	CASC3	100	89.347	Myotis_lucifugus
ENSMUSG00000078676	Casc3	100	90.571	ENSNGAG00000023121	Casc3	100	91.571	Nannospalax_galili
ENSMUSG00000078676	Casc3	100	89.047	ENSNLEG00000001598	CASC3	100	89.900	Nomascus_leucogenys
ENSMUSG00000078676	Casc3	60	70.755	ENSMEUG00000015662	CASC3	100	71.975	Notamacropus_eugenii
ENSMUSG00000078676	Casc3	73	84.086	ENSOPRG00000007240	-	75	85.686	Ochotona_princeps
ENSMUSG00000078676	Casc3	100	85.552	ENSODEG00000017858	CASC3	100	87.252	Octodon_degus
ENSMUSG00000078676	Casc3	79	52.439	ENSOANG00000003499	-	96	52.340	Ornithorhynchus_anatinus
ENSMUSG00000078676	Casc3	100	90.741	ENSOCUG00000002954	CASC3	100	90.883	Oryctolagus_cuniculus
ENSMUSG00000078676	Casc3	99	89.127	ENSOGAG00000034486	CASC3	98	90.129	Otolemur_garnettii
ENSMUSG00000078676	Casc3	100	90.469	ENSOARG00000013239	CASC3	100	90.469	Ovis_aries
ENSMUSG00000078676	Casc3	100	89.189	ENSPPAG00000035069	CASC3	100	90.185	Pan_paniscus
ENSMUSG00000078676	Casc3	100	90.896	ENSPPRG00000023670	CASC3	100	91.323	Panthera_pardus
ENSMUSG00000078676	Casc3	91	90.267	ENSPTIG00000010891	CASC3	91	90.738	Panthera_tigris_altaica
ENSMUSG00000078676	Casc3	100	89.915	ENSPANG00000021708	CASC3	100	90.483	Papio_anubis
ENSMUSG00000078676	Casc3	99	47.854	ENSPKIG00000023186	casc3	98	46.709	Paramormyrops_kingsleyae
ENSMUSG00000078676	Casc3	100	94.857	ENSPEMG00000009774	Casc3	100	94.857	Peromyscus_maniculatus_bairdii
ENSMUSG00000078676	Casc3	100	79.516	ENSPCIG00000025678	CASC3	100	80.797	Phascolarctos_cinereus
ENSMUSG00000078676	Casc3	89	49.843	ENSPFOG00000017632	casc3	100	47.881	Poecilia_formosa
ENSMUSG00000078676	Casc3	86	53.755	ENSPLAG00000005268	casc3	87	49.235	Poecilia_latipinna
ENSMUSG00000078676	Casc3	68	47.773	ENSPMEG00000010299	casc3	73	49.667	Poecilia_mexicana
ENSMUSG00000078676	Casc3	65	66.429	ENSPREG00000011856	casc3	82	51.971	Poecilia_reticulata
ENSMUSG00000078676	Casc3	100	88.905	ENSPPYG00000008467	CASC3	100	90.327	Pongo_abelii
ENSMUSG00000078676	Casc3	100	86.344	ENSPCOG00000008183	CASC3	100	88.620	Propithecus_coquereli
ENSMUSG00000078676	Casc3	100	87.767	ENSPVAG00000008556	CASC3	100	90.043	Pteropus_vampyrus
ENSMUSG00000078676	Casc3	91	98.662	ENSRNOG00000009716	Casc3	100	98.662	Rattus_norvegicus
ENSMUSG00000078676	Casc3	100	90.341	ENSRBIG00000033289	CASC3	100	89.773	Rhinopithecus_bieti
ENSMUSG00000078676	Casc3	100	90.341	ENSRROG00000022337	CASC3	100	90.909	Rhinopithecus_roxellana
ENSMUSG00000078676	Casc3	88	87.702	ENSSBOG00000031406	CASC3	98	89.644	Saimiri_boliviensis_boliviensis
ENSMUSG00000078676	Casc3	89	82.616	ENSSHAG00000013338	CASC3	99	82.532	Sarcophilus_harrisii
ENSMUSG00000078676	Casc3	66	68.750	ENSSMAG00000016096	casc3	64	65.806	Scophthalmus_maximus
ENSMUSG00000078676	Casc3	85	77.778	ENSSARG00000010378	CASC3	98	77.778	Sorex_araneus
ENSMUSG00000078676	Casc3	82	53.376	ENSSPAG00000023008	casc3	78	52.885	Stegastes_partitus
ENSMUSG00000078676	Casc3	89	89.137	ENSSSCG00000017477	CASC3	98	89.727	Sus_scrofa
ENSMUSG00000078676	Casc3	74	71.619	ENSTGUG00000002300	CASC3	99	71.619	Taeniopygia_guttata
ENSMUSG00000078676	Casc3	73	57.080	ENSTRUG00000000673	casc3	84	53.312	Takifugu_rubripes
ENSMUSG00000078676	Casc3	66	91.981	ENSTBEG00000017459	CASC3	67	91.981	Tupaia_belangeri
ENSMUSG00000078676	Casc3	86	79.236	ENSTTRG00000016896	CASC3	98	79.798	Tursiops_truncatus
ENSMUSG00000078676	Casc3	100	89.631	ENSUAMG00000015116	CASC3	100	91.803	Ursus_americanus
ENSMUSG00000078676	Casc3	89	89.457	ENSUMAG00000017697	CASC3	100	92.784	Ursus_maritimus
ENSMUSG00000078676	Casc3	76	95.798	ENSVPAG00000000799	CASC3	75	95.798	Vicugna_pacos
ENSMUSG00000078676	Casc3	100	90.043	ENSVVUG00000000997	CASC3	100	91.038	Vulpes_vulpes
ENSMUSG00000078676	Casc3	89	60.568	ENSXETG00000024395	casc3	89	60.960	Xenopus_tropicalis
ENSMUSG00000078676	Casc3	69	63.158	ENSXMAG00000013937	casc3	61	60.428	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	12843282.	IPI	Function
GO:0005634	nucleus	12843282.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	12843282.	IDA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0008298	intracellular mRNA localization	12843282.	IDA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0031965	nuclear membrane	-	ISO	Component
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0042802	identical protein binding	12080473.	ISO	Function
GO:0042995	cell projection	-	IEA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISO	Component
GO:1990904	ribonucleoprotein complex	12843282.	IDA	Component