EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000078773 (Gene tree)
Gene ID: 623474
Gene Symbol: Rad54b
Alias: E130016E03Rik
Full Name: RAD54 homolog B (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 56884 bases
Position: chr4:11558922-11615805
Accession: 3605986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000066977	ResIII	PF04851.15	1.5e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000108306	-	652	-	ENSMUSP00000103942	93 (aa)	-	A2AIU9
ENSMUST00000178725	-	801	-	ENSMUSP00000136561	156 (aa)	-	J3QN23
ENSMUST00000179731	-	447	-	-	- (aa)	-	-
ENSMUST00000095145	-	2403	-	ENSMUSP00000092767	98 (aa)	-	A0A0A0MQB1
ENSMUST00000144499	-	702	-	-	- (aa)	-	-
ENSMUST00000179498	-	434	-	-	- (aa)	-	-
ENSMUST00000070755	-	2870	-	ENSMUSP00000066977	886 (aa)	-	Q6PFE3

Gene Model

Click here to download ENSMUSG00000078773's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000078773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000078773	Rad54b	66	31.229	ENSMUSG00000031099	Smarca1	68	31.488
ENSMUSG00000078773	Rad54b	56	30.528	ENSMUSG00000028089	Chd1l	50	30.528
ENSMUSG00000078773	Rad54b	76	44.604	ENSMUSG00000028702	Rad54l	88	44.604
ENSMUSG00000078773	Rad54b	56	30.286	ENSMUSG00000056608	Chd9	54	30.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000078773	Rad54b	99	78.304	ENSG00000197275	RAD54B	99	78.304	Homo_sapiens
ENSMUSG00000078773	Rad54b	81	82.849	ENSG00000265817	FSBP	99	82.849	Homo_sapiens
ENSMUSG00000078773	Rad54b	100	78.728	ENSAMEG00000005834	-	100	78.728	Ailuropoda_melanoleuca
ENSMUSG00000078773	Rad54b	99	54.839	ENSACIG00000013005	rad54b	99	54.839	Amphilophus_citrinellus
ENSMUSG00000078773	Rad54b	99	53.698	ENSAOCG00000008523	rad54b	99	53.698	Amphiprion_ocellaris
ENSMUSG00000078773	Rad54b	99	54.698	ENSAPEG00000001673	rad54b	99	54.698	Amphiprion_percula
ENSMUSG00000078773	Rad54b	99	55.295	ENSATEG00000001527	rad54b	99	55.295	Anabas_testudineus
ENSMUSG00000078773	Rad54b	99	66.194	ENSAPLG00000014366	-	99	66.338	Anas_platyrhynchos
ENSMUSG00000078773	Rad54b	90	68.618	ENSACAG00000003671	-	99	68.618	Anolis_carolinensis
ENSMUSG00000078773	Rad54b	73	82.716	ENSANAG00000019528	-	99	82.716	Aotus_nancymaae
ENSMUSG00000078773	Rad54b	99	55.260	ENSACLG00000007826	rad54b	99	55.150	Astatotilapia_calliptera
ENSMUSG00000078773	Rad54b	87	56.489	ENSAMXG00000039985	rad54b	94	56.242	Astyanax_mexicanus
ENSMUSG00000078773	Rad54b	100	76.070	ENSBTAG00000000632	RAD54B	100	76.070	Bos_taurus
ENSMUSG00000078773	Rad54b	81	34.667	WBGene00013792	Y116A8C.13	83	34.626	Caenorhabditis_elegans
ENSMUSG00000078773	Rad54b	99	77.313	ENSCJAG00000000080	-	99	81.466	Callithrix_jacchus
ENSMUSG00000078773	Rad54b	100	77.083	ENSCAFG00000009179	RAD54B	99	77.083	Canis_familiaris
ENSMUSG00000078773	Rad54b	100	76.864	ENSCAFG00020012084	-	99	76.864	Canis_lupus_dingo
ENSMUSG00000078773	Rad54b	100	76.290	ENSCHIG00000008230	-	100	76.290	Capra_hircus
ENSMUSG00000078773	Rad54b	100	78.595	ENSTSYG00000013234	-	100	78.595	Carlito_syrichta
ENSMUSG00000078773	Rad54b	99	77.480	ENSCPOG00000011643	-	99	77.480	Cavia_porcellus
ENSMUSG00000078773	Rad54b	100	77.558	ENSCCAG00000011754	-	99	81.354	Cebus_capucinus
ENSMUSG00000078773	Rad54b	99	77.974	ENSCATG00000030661	-	99	82.711	Cercocebus_atys
ENSMUSG00000078773	Rad54b	99	80.631	ENSCLAG00000010476	-	99	80.631	Chinchilla_lanigera
ENSMUSG00000078773	Rad54b	99	78.194	ENSCSAG00000012712	-	99	78.194	Chlorocebus_sabaeus
ENSMUSG00000078773	Rad54b	99	66.124	ENSCPBG00000003204	-	99	66.863	Chrysemys_picta_bellii
ENSMUSG00000078773	Rad54b	99	78.304	ENSCANG00000017939	-	99	82.988	Colobus_angolensis_palliatus
ENSMUSG00000078773	Rad54b	100	85.073	ENSCGRG00001020184	Rad54b	100	85.073	Cricetulus_griseus_chok1gshd
ENSMUSG00000078773	Rad54b	100	83.632	ENSCGRG00000016752	Rad54b	100	83.632	Cricetulus_griseus_crigri
ENSMUSG00000078773	Rad54b	99	55.493	ENSCSEG00000001601	rad54b	99	55.493	Cynoglossus_semilaevis
ENSMUSG00000078773	Rad54b	99	56.208	ENSCVAG00000009200	rad54b	99	56.208	Cyprinodon_variegatus
ENSMUSG00000078773	Rad54b	100	52.497	ENSDARG00000092134	rad54b	100	59.021	Danio_rerio
ENSMUSG00000078773	Rad54b	99	75.465	ENSDNOG00000015535	-	99	75.465	Dasypus_novemcinctus
ENSMUSG00000078773	Rad54b	100	79.213	ENSDORG00000002492	Rad54b	100	79.438	Dipodomys_ordii
ENSMUSG00000078773	Rad54b	86	75.990	ENSETEG00000010605	-	100	75.990	Echinops_telfairi
ENSMUSG00000078773	Rad54b	100	47.027	ENSEBUG00000009104	rad54b	99	46.888	Eptatretus_burgeri
ENSMUSG00000078773	Rad54b	97	77.072	ENSEASG00005004021	-	99	77.072	Equus_asinus_asinus
ENSMUSG00000078773	Rad54b	100	77.143	ENSECAG00000021949	-	99	77.143	Equus_caballus
ENSMUSG00000078773	Rad54b	81	78.882	ENSEEUG00000008056	-	80	78.882	Erinaceus_europaeus
ENSMUSG00000078773	Rad54b	99	52.068	ENSELUG00000009287	rad54b	99	52.280	Esox_lucius
ENSMUSG00000078773	Rad54b	100	78.289	ENSFCAG00000015513	-	100	82.920	Felis_catus
ENSMUSG00000078773	Rad54b	99	64.885	ENSFALG00000005467	-	99	64.885	Ficedula_albicollis
ENSMUSG00000078773	Rad54b	99	78.390	ENSFDAG00000020541	-	99	78.390	Fukomys_damarensis
ENSMUSG00000078773	Rad54b	88	57.534	ENSFHEG00000014382	rad54b	87	57.783	Fundulus_heteroclitus
ENSMUSG00000078773	Rad54b	88	56.281	ENSGMOG00000014774	rad54b	98	56.281	Gadus_morhua
ENSMUSG00000078773	Rad54b	99	65.789	ENSGALG00000043597	RAD54B	99	65.789	Gallus_gallus
ENSMUSG00000078773	Rad54b	99	54.102	ENSGAFG00000007901	rad54b	99	54.102	Gambusia_affinis
ENSMUSG00000078773	Rad54b	99	53.556	ENSGACG00000009128	rad54b	100	53.556	Gasterosteus_aculeatus
ENSMUSG00000078773	Rad54b	99	66.268	ENSGAGG00000018747	-	99	66.268	Gopherus_agassizii
ENSMUSG00000078773	Rad54b	100	77.717	ENSGGOG00000023516	-	100	77.717	Gorilla_gorilla
ENSMUSG00000078773	Rad54b	99	52.854	ENSHBUG00000016017	rad54b	99	52.854	Haplochromis_burtoni
ENSMUSG00000078773	Rad54b	100	77.402	ENSHGLG00000008263	RAD54B	99	77.402	Heterocephalus_glaber_female
ENSMUSG00000078773	Rad54b	100	76.573	ENSHGLG00100008108	-	99	76.573	Heterocephalus_glaber_male
ENSMUSG00000078773	Rad54b	99	53.341	ENSHCOG00000004764	rad54b	98	55.143	Hippocampus_comes
ENSMUSG00000078773	Rad54b	99	50.949	ENSIPUG00000018531	rad54b	99	51.003	Ictalurus_punctatus
ENSMUSG00000078773	Rad54b	99	77.298	ENSSTOG00000010791	-	99	77.298	Ictidomys_tridecemlineatus
ENSMUSG00000078773	Rad54b	100	79.693	ENSJJAG00000010314	Rad54b	100	79.693	Jaculus_jaculus
ENSMUSG00000078773	Rad54b	99	54.922	ENSKMAG00000004744	rad54b	99	54.922	Kryptolebias_marmoratus
ENSMUSG00000078773	Rad54b	83	67.467	ENSLACG00000000859	-	100	67.467	Latimeria_chalumnae
ENSMUSG00000078773	Rad54b	99	56.958	ENSLOCG00000010100	rad54b	93	63.245	Lepisosteus_oculatus
ENSMUSG00000078773	Rad54b	91	80.446	ENSLAFG00000015315	-	100	80.446	Loxodonta_africana
ENSMUSG00000078773	Rad54b	99	77.863	ENSMFAG00000031629	-	99	82.573	Macaca_fascicularis
ENSMUSG00000078773	Rad54b	99	77.863	ENSMMUG00000005659	-	99	77.863	Macaca_mulatta
ENSMUSG00000078773	Rad54b	99	77.729	ENSMNEG00000016408	-	99	77.729	Macaca_nemestrina
ENSMUSG00000078773	Rad54b	99	77.863	ENSMLEG00000006946	-	99	77.863	Mandrillus_leucophaeus
ENSMUSG00000078773	Rad54b	99	56.049	ENSMAMG00000012269	rad54b	99	56.049	Mastacembelus_armatus
ENSMUSG00000078773	Rad54b	99	53.066	ENSMZEG00005005281	rad54b	97	57.385	Maylandia_zebra
ENSMUSG00000078773	Rad54b	99	65.536	ENSMGAG00000012024	-	99	65.536	Meleagris_gallopavo
ENSMUSG00000078773	Rad54b	100	85.185	ENSMAUG00000013586	Rad54b	100	85.185	Mesocricetus_auratus
ENSMUSG00000078773	Rad54b	99	78.315	ENSMICG00000000754	-	99	78.315	Microcebus_murinus
ENSMUSG00000078773	Rad54b	100	85.410	ENSMOCG00000020035	Rad54b	99	85.410	Microtus_ochrogaster
ENSMUSG00000078773	Rad54b	99	53.275	ENSMMOG00000003394	rad54b	99	53.275	Mola_mola
ENSMUSG00000078773	Rad54b	90	75.031	ENSMODG00000007343	-	99	75.031	Monodelphis_domestica
ENSMUSG00000078773	Rad54b	72	59.845	ENSMALG00000001520	rad54b	99	59.845	Monopterus_albus
ENSMUSG00000078773	Rad54b	100	96.953	MGP_CAROLIEiJ_G0025810	Rad54b	100	96.953	Mus_caroli
ENSMUSG00000078773	Rad54b	100	95.937	MGP_PahariEiJ_G0023933	Rad54b	100	95.937	Mus_pahari
ENSMUSG00000078773	Rad54b	100	98.646	MGP_SPRETEiJ_G0026758	Rad54b	100	98.646	Mus_spretus
ENSMUSG00000078773	Rad54b	91	81.829	ENSMPUG00000008878	-	100	81.829	Mustela_putorius_furo
ENSMUSG00000078773	Rad54b	100	76.316	ENSMLUG00000008953	-	100	76.316	Myotis_lucifugus
ENSMUSG00000078773	Rad54b	100	84.146	ENSNGAG00000017537	Rad54b	100	84.146	Nannospalax_galili
ENSMUSG00000078773	Rad54b	99	55.260	ENSNBRG00000013394	rad54b	99	55.260	Neolamprologus_brichardi
ENSMUSG00000078773	Rad54b	99	78.414	ENSNLEG00000003062	-	99	82.573	Nomascus_leucogenys
ENSMUSG00000078773	Rad54b	73	69.919	ENSMEUG00000012426	-	71	69.919	Notamacropus_eugenii
ENSMUSG00000078773	Rad54b	100	76.159	ENSODEG00000019564	-	100	76.159	Octodon_degus
ENSMUSG00000078773	Rad54b	91	74.226	ENSODEG00000002650	-	96	81.077	Octodon_degus
ENSMUSG00000078773	Rad54b	99	53.664	ENSONIG00000006067	rad54b	99	53.664	Oreochromis_niloticus
ENSMUSG00000078773	Rad54b	84	72.510	ENSOANG00000011348	-	100	72.510	Ornithorhynchus_anatinus
ENSMUSG00000078773	Rad54b	100	76.923	ENSOCUG00000016478	-	99	76.923	Oryctolagus_cuniculus
ENSMUSG00000078773	Rad54b	99	53.526	ENSORLG00000008918	rad54b	99	61.646	Oryzias_latipes
ENSMUSG00000078773	Rad54b	72	61.646	ENSORLG00020012171	rad54b	99	61.646	Oryzias_latipes_hni
ENSMUSG00000078773	Rad54b	99	53.305	ENSORLG00015018536	rad54b	99	53.305	Oryzias_latipes_hsok
ENSMUSG00000078773	Rad54b	85	58.968	ENSOMEG00000004345	rad54b	99	58.968	Oryzias_melastigma
ENSMUSG00000078773	Rad54b	99	77.473	ENSOGAG00000007854	-	99	77.473	Otolemur_garnettii
ENSMUSG00000078773	Rad54b	91	80.788	ENSOARG00000007691	-	100	80.788	Ovis_aries
ENSMUSG00000078773	Rad54b	99	76.762	ENSPPAG00000029572	-	99	76.762	Pan_paniscus
ENSMUSG00000078773	Rad54b	100	78.509	ENSPPRG00000007571	-	100	82.920	Panthera_pardus
ENSMUSG00000078773	Rad54b	81	82.920	ENSPTIG00000012670	-	100	82.920	Panthera_tigris_altaica
ENSMUSG00000078773	Rad54b	99	78.194	ENSPTRG00000020427	-	99	82.849	Pan_troglodytes
ENSMUSG00000078773	Rad54b	99	77.974	ENSPANG00000019566	-	99	77.974	Papio_anubis
ENSMUSG00000078773	Rad54b	99	57.127	ENSPKIG00000014974	rad54b	99	57.127	Paramormyrops_kingsleyae
ENSMUSG00000078773	Rad54b	99	64.885	ENSPSIG00000002383	-	98	69.825	Pelodiscus_sinensis
ENSMUSG00000078773	Rad54b	100	85.746	ENSPEMG00000012133	Rad54b	100	85.746	Peromyscus_maniculatus_bairdii
ENSMUSG00000078773	Rad54b	88	56.927	ENSPMAG00000002916	rad54b	98	57.305	Petromyzon_marinus
ENSMUSG00000078773	Rad54b	90	75.686	ENSPCIG00000020151	-	94	75.531	Phascolarctos_cinereus
ENSMUSG00000078773	Rad54b	99	53.095	ENSPFOG00000023411	rad54b	99	53.095	Poecilia_formosa
ENSMUSG00000078773	Rad54b	99	53.305	ENSPLAG00000010430	rad54b	99	53.305	Poecilia_latipinna
ENSMUSG00000078773	Rad54b	99	54.515	ENSPMEG00000016873	rad54b	99	54.515	Poecilia_mexicana
ENSMUSG00000078773	Rad54b	99	55.519	ENSPREG00000018443	rad54b	99	55.519	Poecilia_reticulata
ENSMUSG00000078773	Rad54b	99	77.863	ENSPPYG00000018750	-	99	77.863	Pongo_abelii
ENSMUSG00000078773	Rad54b	99	79.341	ENSPCOG00000026845	-	99	83.724	Propithecus_coquereli
ENSMUSG00000078773	Rad54b	83	82.186	ENSPVAG00000000261	-	86	82.186	Pteropus_vampyrus
ENSMUSG00000078773	Rad54b	87	58.101	ENSPNYG00000018303	rad54b	95	58.101	Pundamilia_nyererei
ENSMUSG00000078773	Rad54b	99	53.435	ENSPNAG00000000295	rad54b	99	53.392	Pygocentrus_nattereri
ENSMUSG00000078773	Rad54b	100	88.189	ENSRNOG00000039949	Rad54b	100	88.189	Rattus_norvegicus
ENSMUSG00000078773	Rad54b	99	77.753	ENSRBIG00000020419	-	99	77.753	Rhinopithecus_bieti
ENSMUSG00000078773	Rad54b	99	77.753	ENSRROG00000039897	-	99	77.753	Rhinopithecus_roxellana
ENSMUSG00000078773	Rad54b	91	33.935	YBR073W	RDH54	61	41.051	Saccharomyces_cerevisiae
ENSMUSG00000078773	Rad54b	100	76.948	ENSSBOG00000028501	-	100	76.948	Saimiri_boliviensis_boliviensis
ENSMUSG00000078773	Rad54b	99	70.285	ENSSHAG00000017038	-	99	70.285	Sarcophilus_harrisii
ENSMUSG00000078773	Rad54b	64	64.737	ENSSFOG00015008483	rad54b	88	64.737	Scleropages_formosus
ENSMUSG00000078773	Rad54b	99	54.994	ENSSMAG00000018659	rad54b	99	55.107	Scophthalmus_maximus
ENSMUSG00000078773	Rad54b	97	54.135	ENSSDUG00000001122	rad54b	97	54.243	Seriola_dumerili
ENSMUSG00000078773	Rad54b	99	54.025	ENSSLDG00000013787	rad54b	99	54.237	Seriola_lalandi_dorsalis
ENSMUSG00000078773	Rad54b	99	65.919	ENSSPUG00000016497	-	99	65.919	Sphenodon_punctatus
ENSMUSG00000078773	Rad54b	99	55.138	ENSSPAG00000012800	rad54b	99	55.138	Stegastes_partitus
ENSMUSG00000078773	Rad54b	100	77.187	ENSSSCG00000006101	-	99	81.830	Sus_scrofa
ENSMUSG00000078773	Rad54b	99	64.513	ENSTGUG00000011880	-	99	64.732	Taeniopygia_guttata
ENSMUSG00000078773	Rad54b	99	53.072	ENSTRUG00000010015	rad54b	99	53.072	Takifugu_rubripes
ENSMUSG00000078773	Rad54b	100	74.643	ENSTTRG00000006312	-	100	74.643	Tursiops_truncatus
ENSMUSG00000078773	Rad54b	100	78.180	ENSUMAG00000016401	-	100	78.180	Ursus_maritimus
ENSMUSG00000078773	Rad54b	100	76.678	ENSVPAG00000003157	-	100	76.678	Vicugna_pacos
ENSMUSG00000078773	Rad54b	99	53.274	ENSXETG00000025924	rad54b	99	57.179	Xenopus_tropicalis
ENSMUSG00000078773	Rad54b	99	54.435	ENSXMAG00000013141	rad54b	99	54.435	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000724	double-strand break repair via homologous recombination	16428451.	IGI	Process
GO:0000724	double-strand break repair via homologous recombination	19061978.	IMP	Process
GO:0000724	double-strand break repair via homologous recombination	16428451.	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0006974	cellular response to DNA damage stimulus	19061978.	IGI	Process
GO:0006974	cellular response to DNA damage stimulus	16428451.	IMP	Process
GO:0008340	determination of adult lifespan	19061978.	IGI	Process
GO:0010212	response to ionizing radiation	19061978.	IGI	Process
GO:0010212	response to ionizing radiation	16428451.	IMP	Process
GO:0015616	DNA translocase activity	16428451.	ISO	Function
GO:0042493	response to drug	16428451.	IMP	Process