EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000079426 (Gene tree)
Gene ID: 68089
Gene Symbol: Arpc4
Alias: 5330419I20Rik|p20-Arc
Full Name: actin related protein 2/3 complex%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 12334
Position: chr6: 113378115-113390448
Accession: 1915339
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156898	-	2270	-	ENSMUSP00000114839	168 (aa)	-	P59999
ENSMUST00000203578	-	1323	-	ENSMUSP00000145344	78 (aa)	-	Q3TX55
ENSMUST00000204802	-	794	-	ENSMUSP00000144751	78 (aa)	-	Q3TX55
ENSMUST00000171058	-	695	-	ENSMUSP00000131690	91 (aa)	-	E9PWA7

Gene Model

Click here to download ENSMUSG00000079426's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04144	Endocytosis	KEGG
mmu04666	Fc gamma R-mediated phagocytosis	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG
mmu05132	Salmonella infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000079426's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000079426	Arpc4	100	100.000	ENSG00000241553	ARPC4	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005885	Arp2/3 protein complex	-	ISO	Component
GO:0005885	Arp2/3 protein complex	12473693.	TAS	Component
GO:0015629	actin cytoskeleton	-	IEA	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0030041	actin filament polymerization	-	IEA	Process
GO:0030674	protein binding, bridging	-	ISO	Function
GO:0030833	regulation of actin filament polymerization	-	IEA	Process
GO:0034314	Arp2/3 complex-mediated actin nucleation	-	ISO	Process
GO:0042995	cell projection	-	IEA	Component
GO:0051015	actin filament binding	-	ISO	Function