EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000087166 (Gene tree)
Gene ID: 381591
Gene Symbol: L1td1
Alias: ECAT11
Full Name: LINE-1 type transposase domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 11747 bases
Position: chr4:98726734-98738480
Accession: 3578435
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000127504	Transposase_22	PF02994.14	7.2e-21	1	1
ENSMUSP00000134149	Transposase_22	PF02994.14	8.1e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000171708	-	466	-	ENSMUSP00000132806	119 (aa)	-	E9PXD6
ENSMUST00000152889	-	705	-	ENSMUSP00000131563	147 (aa)	-	E9PZU6
ENSMUST00000154279	-	2942	-	ENSMUSP00000127504	782 (aa)	-	Q587J6
ENSMUST00000173659	-	2547	-	ENSMUSP00000134149	848 (aa)	-	G3UYN0

Gene Model

Click here to download ENSMUSG00000087166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000087166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000087166	L1td1	59	52.800	ENSG00000240563	L1TD1	60	51.179	Homo_sapiens
ENSMUSG00000087166	L1td1	76	56.985	ENSCJAG00000038509	L1TD1	90	56.985	Callithrix_jacchus
ENSMUSG00000087166	L1td1	83	57.180	ENSCAFG00020012951	L1TD1	91	57.180	Canis_lupus_dingo
ENSMUSG00000087166	L1td1	99	78.404	ENSCGRG00001024238	L1td1	97	78.487	Cricetulus_griseus_chok1gshd
ENSMUSG00000087166	L1td1	99	78.404	ENSCGRG00000011853	L1td1	97	78.487	Cricetulus_griseus_crigri
ENSMUSG00000087166	L1td1	99	37.637	ENSDNOG00000040097	-	61	43.659	Dasypus_novemcinctus
ENSMUSG00000087166	L1td1	99	40.728	ENSDNOG00000039645	-	87	49.000	Dasypus_novemcinctus
ENSMUSG00000087166	L1td1	99	43.543	ENSECAG00000013248	L1TD1	91	52.304	Equus_caballus
ENSMUSG00000087166	L1td1	65	49.007	ENSFCAG00000042658	L1TD1	51	51.613	Felis_catus
ENSMUSG00000087166	L1td1	59	52.533	ENSGGOG00000026365	L1TD1	61	50.943	Gorilla_gorilla
ENSMUSG00000087166	L1td1	53	31.752	ENSHGLG00100019863	-	75	31.752	Heterocephalus_glaber_male
ENSMUSG00000087166	L1td1	99	71.627	ENSMAUG00000020769	L1td1	95	81.282	Mesocricetus_auratus
ENSMUSG00000087166	L1td1	52	80.397	ENSMOCG00000007037	L1td1	51	81.704	Microtus_ochrogaster
ENSMUSG00000087166	L1td1	100	92.115	MGP_CAROLIEiJ_G0026185	L1td1	100	92.616	Mus_caroli
ENSMUSG00000087166	L1td1	50	88.832	MGP_PahariEiJ_G0028522	L1td1	51	87.736	Mus_pahari
ENSMUSG00000087166	L1td1	100	96.547	MGP_SPRETEiJ_G0027153	L1td1	100	96.547	Mus_spretus
ENSMUSG00000087166	L1td1	99	51.582	ENSNGAG00000000776	L1td1	79	67.013	Nannospalax_galili
ENSMUSG00000087166	L1td1	57	52.533	ENSPPAG00000043606	L1TD1	64	50.943	Pan_paniscus
ENSMUSG00000087166	L1td1	57	52.533	ENSPTRG00000034387	L1TD1	64	50.943	Pan_troglodytes
ENSMUSG00000087166	L1td1	89	81.771	ENSPEMG00000008068	L1td1	96	81.771	Peromyscus_maniculatus_bairdii
ENSMUSG00000087166	L1td1	99	44.484	ENSPPYG00000001286	L1TD1	60	52.645	Pongo_abelii
ENSMUSG00000087166	L1td1	99	80.524	ENSRNOG00000050670	AABR07049326.1	99	78.027	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	30.303	ENSRNOG00000045597	AABR07018132.1	91	31.579	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	32.110	ENSRNOG00000048948	AABR07067082.1	91	32.110	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	31.498	ENSRNOG00000050075	AABR07013425.1	91	31.498	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	30.275	ENSRNOG00000052559	AABR07037395.2	91	30.275	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	30.887	ENSRNOG00000052690	AABR07042361.1	91	31.579	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	31.804	ENSRNOG00000048904	AABR07004232.1	91	31.804	Rattus_norvegicus
ENSMUSG00000087166	L1td1	52	31.804	ENSRNOG00000048921	AABR07053613.1	91	31.804	Rattus_norvegicus
ENSMUSG00000087166	L1td1	99	42.491	ENSRBIG00000005782	L1TD1	60	50.948	Rhinopithecus_bieti
ENSMUSG00000087166	L1td1	73	54.027	ENSTBEG00000015274	L1TD1	84	54.027	Tupaia_belangeri
ENSMUSG00000087166	L1td1	99	44.143	ENSUMAG00000014924	L1TD1	96	57.360	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0032197	transposition, RNA-mediated	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component