EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000089824 (Gene tree)
Gene ID: 75710
Gene Symbol: Rbm12
Alias: 5730420G12Rik|9430070C08Rik|SWAN
Full Name: RNA binding motif protein 12
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 20021 bases
Position: chr2:156091958-156111978
Accession: 1922960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000050461	RRM_1	PF00076.22	6.1e-29	1	3
ENSMUSP00000050461	RRM_1	PF00076.22	6.1e-29	2	3
ENSMUSP00000050461	RRM_1	PF00076.22	6.1e-29	3	3
ENSMUSP00000105233	RRM_1	PF00076.22	6.1e-29	1	3
ENSMUSP00000105233	RRM_1	PF00076.22	6.1e-29	2	3
ENSMUSP00000105233	RRM_1	PF00076.22	6.1e-29	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000059647	-	6667	-	ENSMUSP00000050461	992 (aa)	-	Q8R4X3
ENSMUST00000109604	-	6635	-	ENSMUSP00000105233	992 (aa)	-	Q8R4X3
ENSMUST00000128499	-	574	-	ENSMUSP00000118067	143 (aa)	-	B7ZCQ0
ENSMUST00000138068	-	560	-	ENSMUSP00000119519	133 (aa)	-	B7ZCQ1
ENSMUST00000131377	-	1058	-	ENSMUSP00000120731	288 (aa)	-	B7ZCP9

Gene Model

Click here to download ENSMUSG00000089824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000089824's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000089824	Rbm12	56	71.264	ENSMUSG00000052137	Rbm12b2	68	71.264
ENSMUSG00000089824	Rbm12	56	71.264	ENSMUSG00000046667	Rbm12b1	67	71.264

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000089824	Rbm12	100	92.867	ENSG00000244462	RBM12	100	97.902	Homo_sapiens
ENSMUSG00000089824	Rbm12	97	94.627	ENSAMEG00000019189	RBM12	100	86.922	Ailuropoda_melanoleuca
ENSMUSG00000089824	Rbm12	90	81.402	ENSACAG00000006330	RBM12	72	81.402	Anolis_carolinensis
ENSMUSG00000089824	Rbm12	100	92.582	ENSANAG00000032596	RBM12	98	86.044	Aotus_nancymaae
ENSMUSG00000089824	Rbm12	100	87.525	ENSBTAG00000044015	RBM12	100	87.022	Bos_taurus
ENSMUSG00000089824	Rbm12	91	95.559	ENSCAFG00000008256	RBM12	98	95.559	Canis_familiaris
ENSMUSG00000089824	Rbm12	89	95.296	ENSCAFG00020005650	RBM12	100	77.976	Canis_lupus_dingo
ENSMUSG00000089824	Rbm12	100	80.943	ENSCHIG00000024592	RBM12	100	86.016	Capra_hircus
ENSMUSG00000089824	Rbm12	96	93.003	ENSTSYG00000030563	RBM12	73	93.639	Carlito_syrichta
ENSMUSG00000089824	Rbm12	85	88.430	ENSCAPG00000006176	RBM12	96	86.667	Cavia_aperea
ENSMUSG00000089824	Rbm12	100	88.377	ENSCPOG00000035170	RBM12	100	87.103	Cavia_porcellus
ENSMUSG00000089824	Rbm12	88	89.362	ENSCCAG00000035899	-	100	89.617	Cebus_capucinus
ENSMUSG00000089824	Rbm12	96	90.166	ENSCCAG00000036056	-	98	84.139	Cebus_capucinus
ENSMUSG00000089824	Rbm12	100	92.725	ENSCATG00000030934	RBM12	98	85.256	Cercocebus_atys
ENSMUSG00000089824	Rbm12	100	88.810	ENSCLAG00000017230	RBM12	100	87.964	Chinchilla_lanigera
ENSMUSG00000089824	Rbm12	100	92.439	ENSCANG00000030552	RBM12	98	85.055	Colobus_angolensis_palliatus
ENSMUSG00000089824	Rbm12	100	95.464	ENSCGRG00001021144	Rbm12	100	94.758	Cricetulus_griseus_chok1gshd
ENSMUSG00000089824	Rbm12	100	95.464	ENSCGRG00000012719	Rbm12	100	94.758	Cricetulus_griseus_crigri
ENSMUSG00000089824	Rbm12	100	83.065	ENSDORG00000000606	-	100	82.661	Dipodomys_ordii
ENSMUSG00000089824	Rbm12	100	88.632	ENSDORG00000028509	-	100	89.034	Dipodomys_ordii
ENSMUSG00000089824	Rbm12	100	93.153	ENSECAG00000021997	RBM12	100	86.419	Equus_caballus
ENSMUSG00000089824	Rbm12	59	95.161	ENSEEUG00000008858	-	56	95.161	Erinaceus_europaeus
ENSMUSG00000089824	Rbm12	100	92.725	ENSFDAG00000014663	RBM12	100	86.318	Fukomys_damarensis
ENSMUSG00000089824	Rbm12	89	84.178	ENSGALG00000030253	RBM12	100	85.100	Gallus_gallus
ENSMUSG00000089824	Rbm12	100	92.582	ENSGGOG00000028500	RBM12	98	85.155	Gorilla_gorilla
ENSMUSG00000089824	Rbm12	100	88.330	ENSHGLG00000013208	RBM12	100	88.229	Heterocephalus_glaber_female
ENSMUSG00000089824	Rbm12	83	95.768	ENSHGLG00100019158	RBM12	88	95.768	Heterocephalus_glaber_male
ENSMUSG00000089824	Rbm12	100	86.492	ENSSTOG00000019739	RBM12	100	85.585	Ictidomys_tridecemlineatus
ENSMUSG00000089824	Rbm12	100	76.593	ENSJJAG00000009879	-	94	86.735	Jaculus_jaculus
ENSMUSG00000089824	Rbm12	100	84.105	ENSLAFG00000010341	RBM12	100	85.815	Loxodonta_africana
ENSMUSG00000089824	Rbm12	100	92.439	ENSMFAG00000032583	RBM12	98	76.407	Macaca_fascicularis
ENSMUSG00000089824	Rbm12	100	92.582	ENSMMUG00000020960	CPNE1	100	85.155	Macaca_mulatta
ENSMUSG00000089824	Rbm12	100	92.582	ENSMNEG00000045365	RBM12	98	85.155	Macaca_nemestrina
ENSMUSG00000089824	Rbm12	100	92.582	ENSMLEG00000032492	RBM12	98	85.155	Mandrillus_leucophaeus
ENSMUSG00000089824	Rbm12	89	84.485	ENSMGAG00000001502	RBM12	100	85.407	Meleagris_gallopavo
ENSMUSG00000089824	Rbm12	100	95.565	ENSMAUG00000012800	Rbm12	100	95.565	Mesocricetus_auratus
ENSMUSG00000089824	Rbm12	93	94.234	ENSMICG00000032761	-	98	77.856	Microcebus_murinus
ENSMUSG00000089824	Rbm12	100	94.874	ENSMOCG00000012950	Rbm12	100	94.372	Microtus_ochrogaster
ENSMUSG00000089824	Rbm12	91	88.288	ENSMODG00000001591	RBM12	98	89.329	Monodelphis_domestica
ENSMUSG00000089824	Rbm12	100	97.319	MGP_CAROLIEiJ_G0024551	Rbm12	100	97.319	Mus_caroli
ENSMUSG00000089824	Rbm12	100	96.723	MGP_PahariEiJ_G0025996	Rbm12	100	96.723	Mus_pahari
ENSMUSG00000089824	Rbm12	100	98.303	MGP_SPRETEiJ_G0025473	Rbm12	100	98.303	Mus_spretus
ENSMUSG00000089824	Rbm12	97	93.304	ENSMPUG00000017789	-	100	86.117	Mustela_putorius_furo
ENSMUSG00000089824	Rbm12	100	84.608	ENSMLUG00000011217	RBM12	98	86.620	Myotis_lucifugus
ENSMUSG00000089824	Rbm12	100	93.448	ENSNGAG00000015846	Rbm12	100	90.119	Nannospalax_galili
ENSMUSG00000089824	Rbm12	100	93.010	ENSNLEG00000010268	RBM12	98	85.456	Nomascus_leucogenys
ENSMUSG00000089824	Rbm12	91	87.688	ENSMEUG00000007621	RBM12	74	86.967	Notamacropus_eugenii
ENSMUSG00000089824	Rbm12	100	84.909	ENSOPRG00000005687	RBM12	100	85.010	Ochotona_princeps
ENSMUSG00000089824	Rbm12	100	86.278	ENSODEG00000013870	RBM12	100	85.390	Octodon_degus
ENSMUSG00000089824	Rbm12	100	92.867	ENSPPAG00000040719	RBM12	98	85.356	Pan_paniscus
ENSMUSG00000089824	Rbm12	100	92.867	ENSPTRG00000013446	RBM12	98	85.356	Pan_troglodytes
ENSMUSG00000089824	Rbm12	100	92.867	ENSPTRG00000040708	-	98	85.356	Pan_troglodytes
ENSMUSG00000089824	Rbm12	100	92.582	ENSPANG00000020003	CPNE1	98	85.155	Papio_anubis
ENSMUSG00000089824	Rbm12	83	84.615	ENSPSIG00000007369	RBM12	98	84.615	Pelodiscus_sinensis
ENSMUSG00000089824	Rbm12	100	95.808	ENSPEMG00000017769	Rbm12	100	95.808	Peromyscus_maniculatus_bairdii
ENSMUSG00000089824	Rbm12	55	82.609	ENSPFOG00000023551	rbm12	88	78.873	Poecilia_formosa
ENSMUSG00000089824	Rbm12	100	92.725	ENSPPYG00000010960	RBM12	100	85.385	Pongo_abelii
ENSMUSG00000089824	Rbm12	96	91.618	ENSPCAG00000008653	RBM12	100	84.476	Procavia_capensis
ENSMUSG00000089824	Rbm12	99	93.103	ENSPCOG00000023724	RBM12	98	85.944	Propithecus_coquereli
ENSMUSG00000089824	Rbm12	84	92.725	ENSPVAG00000014937	RBM12	100	86.217	Pteropus_vampyrus
ENSMUSG00000089824	Rbm12	100	93.217	ENSRNOG00000049913	LOC100910990	100	91.376	Rattus_norvegicus
ENSMUSG00000089824	Rbm12	100	93.217	ENSRNOG00000019723	Rbm12	100	91.376	Rattus_norvegicus
ENSMUSG00000089824	Rbm12	100	92.439	ENSRBIG00000042965	RBM12	98	85.055	Rhinopithecus_bieti
ENSMUSG00000089824	Rbm12	100	92.439	ENSRROG00000037485	RBM12	98	85.055	Rhinopithecus_roxellana
ENSMUSG00000089824	Rbm12	100	92.582	ENSSBOG00000027633	RBM12	98	85.743	Saimiri_boliviensis_boliviensis
ENSMUSG00000089824	Rbm12	91	88.288	ENSSHAG00000018585	RBM12	100	89.329	Sarcophilus_harrisii
ENSMUSG00000089824	Rbm12	100	86.030	ENSSSCG00000036156	RBM12	100	87.223	Sus_scrofa
ENSMUSG00000089824	Rbm12	92	84.909	ENSTGUG00000003002	RBM12	100	84.909	Taeniopygia_guttata
ENSMUSG00000089824	Rbm12	100	77.377	ENSTTRG00000017035	RBM12	100	86.519	Tursiops_truncatus
ENSMUSG00000089824	Rbm12	98	94.205	ENSUAMG00000010430	RBM12	100	86.720	Ursus_americanus
ENSMUSG00000089824	Rbm12	89	100.000	ENSVPAG00000003812	RBM12	91	100.000	Vicugna_pacos
ENSMUSG00000089824	Rbm12	91	63.425	ENSXETG00000033541	RBM12	72	62.291	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0008150	biological_process	-	ND	Process