EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000090714 (Gene tree)
Gene ID: 545913
Gene Symbol: Zscan4d
Alias: EG545913
Full Name: zinc finger and SCAN domain containing 4D
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 4786 bases
Position: chr7:11161374-11166159
Accession: 3645954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000066504	zf-C2H2	PF00096.26	6.4e-13	1	3
ENSMUSP00000066504	zf-C2H2	PF00096.26	6.4e-13	2	3
ENSMUSP00000066504	zf-C2H2	PF00096.26	6.4e-13	3	3
ENSMUSP00000066504	zf-met	PF12874.7	4.9e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000067210	-	2272	XM_006540208	ENSMUSP00000066504	506 (aa)	XP_006540271	A7KBS4

Gene Model

Click here to download ENSMUSG00000090714's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000090714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000090714	Zscan4d	100	94.664	ENSMUSG00000054272	Zscan4c	100	94.664
ENSMUSG00000090714	Zscan4d	100	94.466	ENSMUSG00000070828	Zscan4f	100	94.466
ENSMUSG00000090714	Zscan4d	100	94.071	ENSMUSG00000110190	Zscan4-ps2	100	94.071
ENSMUSG00000090714	Zscan4d	100	93.281	ENSMUSG00000109969	Zscan4-ps3	100	93.281

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000090714	Zscan4d	97	40.484	ENSCHIG00000017999	-	94	40.484	Capra_hircus
ENSMUSG00000090714	Zscan4d	98	47.273	ENSRNOG00000059074	LOC691661	96	47.273	Rattus_norvegicus
ENSMUSG00000090714	Zscan4d	99	66.934	ENSRNOG00000028214	Zscan4f	99	66.934	Rattus_norvegicus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000781	chromosome, telomeric region	-	IEA	Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function