EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000090841 (Gene tree)
Gene ID: 17904
Gene Symbol: Myl6
Alias: MLC3nm|Myln
Full Name: myosin%2C light polypeptide 6%2C alkali%2C smooth muscle and non-muscle
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 3286
Position: chr10: 128490860-128494145
Accession: 109318
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000218170	-	824	-	-	- (aa)	-	-
ENSMUST00000219554	-	790	-	-	- (aa)	-	-
ENSMUST00000218713	-	369	-	-	- (aa)	-	-
ENSMUST00000218813	-	3040	-	-	- (aa)	-	-
ENSMUST00000217733	-	1668	-	ENSMUSP00000151236	152 (aa)	-	A0A1W2P6F6
ENSMUST00000217913	-	436	-	-	- (aa)	-	-
ENSMUST00000220307	-	496	-	ENSMUSP00000151991	46 (aa)	-	A0A1W2P8F0
ENSMUST00000217969	-	608	-	ENSMUSP00000151250	139 (aa)	-	A0A1W2P6G5
ENSMUST00000219236	-	692	XM_006513323	ENSMUSP00000151915	158 (aa)	XP_006513386	A0A1W2P7Q9
ENSMUST00000219100	-	620	-	-	- (aa)	-	-
ENSMUST00000220427	-	746	-	ENSMUSP00000151914	38 (aa)	-	A0A1W2P888
ENSMUST00000219655	-	651	-	-	- (aa)	-	-
ENSMUST00000218127	-	691	-	ENSMUSP00000151693	151 (aa)	-	Q60605
ENSMUST00000164181	-	665	-	ENSMUSP00000128803	151 (aa)	-	Q60605
ENSMUST00000217776	-	562	-	ENSMUSP00000151786	158 (aa)	-	A0A1W2P7Q9

Gene Model

Click here to download ENSMUSG00000090841's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04270	Vascular smooth muscle contraction	KEGG
mmu04530	Tight junction	KEGG
mmu04921	Oxytocin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000090841's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000090841	Myl6	93	46.429	WBGene00003371	mlc-3	91	46.429	Caenorhabditis_elegans
ENSMUSG00000090841	Myl6	100	100.000	ENSG00000092841	MYL6	100	100.000	Homo_sapiens
ENSMUSG00000090841	Myl6	99	74.172	ENSMUSG00000061086	Myl4	92	75.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003774	motor activity	2304459.	TAS	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	25605924.	IPI	Function
GO:0005903	brush border	-	ISO	Component
GO:0006936	muscle contraction	2304459.	TAS	Process
GO:0007519	skeletal muscle tissue development	2304459.	TAS	Process
GO:0008307	structural constituent of muscle	-	ISO	Function
GO:0008307	structural constituent of muscle	2304459.	TAS	Function
GO:0016459	myosin complex	2304459.	TAS	Component
GO:0016461	unconventional myosin complex	2304459.	IDA	Component
GO:0030049	muscle filament sliding	2304459.	TAS	Process