EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000090854 (Gene tree)
Gene ID: 100043292
Gene Symbol: Gm4340
Alias: -
Full Name: predicted gene 4340
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 2481 bases
Position: chr10:104194042-104196522
Accession: 3782524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000137984	RRM_1	PF00076.22	1.9e-12	1	1
ENSMUSP00000130793	RRM_1	PF00076.22	1.9e-12	1	1
ENSMUSP00000137824	RRM_1	PF00076.22	1.9e-12	1	1
ENSMUSP00000130793	FYTT	PF07078.11	0.0009	1	1
ENSMUSP00000137824	FYTT	PF07078.11	0.0009	1	1
ENSMUSP00000137984	FYTT	PF07078.11	0.0016	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163113	-	807	XM_017313746	ENSMUSP00000130793	268 (aa)	XP_017169235	L7N2C4
ENSMUST00000181615	-	1258	-	ENSMUSP00000137824	268 (aa)	-	L7N2C4
ENSMUST00000181036	-	1197	-	ENSMUSP00000137984	265 (aa)	-	M0QWS9

Gene Model

Click here to download ENSMUSG00000090854's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03040	Spliceosome	KEGG
mmu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000090854's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000090854	Gm4340	100	80.969	ENSMUSG00000096640	Gm4312	100	83.045
ENSMUSG00000090854	Gm4340	100	98.491	ENSMUSG00000097550	Gm21304	100	98.491
ENSMUSG00000090854	Gm4340	100	99.624	ENSMUSG00000091779	Gm21293	100	99.624
ENSMUSG00000090854	Gm4340	100	81.315	ENSMUSG00000112856	Gm4305	100	82.007
ENSMUSG00000090854	Gm4340	100	98.507	ENSMUSG00000097878	Gm8764	100	100.000
ENSMUSG00000090854	Gm4340	100	55.849	ENSMUSG00000060244	Alyref2	100	62.264
ENSMUSG00000090854	Gm4340	100	53.659	ENSMUSG00000025134	Alyref	100	62.718
ENSMUSG00000090854	Gm4340	100	80.612	ENSMUSG00000091101	Gm4302	100	80.612
ENSMUSG00000090854	Gm4340	100	71.321	ENSMUSG00000086727	4931428L18Rik	100	71.698
ENSMUSG00000090854	Gm4340	100	81.315	ENSMUSG00000112931	Gm4303	100	82.007
ENSMUSG00000090854	Gm4340	100	98.507	ENSMUSG00000095022	Gm20765	100	98.507
ENSMUSG00000090854	Gm4340	100	81.315	ENSMUSG00000096744	Gm4307	100	82.007
ENSMUSG00000090854	Gm4340	100	71.698	ENSMUSG00000117091	AC153137.1	100	71.698
ENSMUSG00000090854	Gm4340	100	80.969	ENSMUSG00000094314	Gm4301	100	83.045
ENSMUSG00000090854	Gm4340	100	98.507	ENSMUSG00000097427	Gm6763	100	100.000
ENSMUSG00000090854	Gm4340	100	98.507	ENSMUSG00000094144	Gm21312	100	98.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000090854	Gm4340	100	52.778	ENSG00000183684	ALYREF	98	61.034	Homo_sapiens
ENSMUSG00000090854	Gm4340	83	51.754	ENSAPOG00000018455	ALYREF	100	50.980	Acanthochromis_polyacanthus
ENSMUSG00000090854	Gm4340	88	53.112	ENSAMEG00000017463	ALYREF	83	62.288	Ailuropoda_melanoleuca
ENSMUSG00000090854	Gm4340	86	55.895	ENSACAG00000010526	ALYREF	100	56.055	Anolis_carolinensis
ENSMUSG00000090854	Gm4340	67	67.978	ENSANAG00000028229	-	78	57.143	Aotus_nancymaae
ENSMUSG00000090854	Gm4340	79	56.459	ENSANAG00000022638	-	75	64.762	Aotus_nancymaae
ENSMUSG00000090854	Gm4340	100	52.778	ENSBTAG00000008498	ALYREF	100	61.938	Bos_taurus
ENSMUSG00000090854	Gm4340	100	51.736	ENSCJAG00000039942	ALYREF	98	61.034	Callithrix_jacchus
ENSMUSG00000090854	Gm4340	100	52.431	ENSCAFG00000005877	ALYREF	100	61.592	Canis_familiaris
ENSMUSG00000090854	Gm4340	100	52.431	ENSCAFG00020009815	ALYREF	100	61.592	Canis_lupus_dingo
ENSMUSG00000090854	Gm4340	97	55.894	ENSCHIG00000017396	ALYREF	97	61.379	Capra_hircus
ENSMUSG00000090854	Gm4340	88	53.448	ENSTSYG00000002272	ALYREF	79	62.667	Carlito_syrichta
ENSMUSG00000090854	Gm4340	62	53.049	ENSCAPG00000014727	-	99	65.854	Cavia_aperea
ENSMUSG00000090854	Gm4340	100	55.926	ENSCPOG00000013710	ALYREF	100	63.333	Cavia_porcellus
ENSMUSG00000090854	Gm4340	100	54.717	ENSCCAG00000030237	-	100	59.623	Cebus_capucinus
ENSMUSG00000090854	Gm4340	100	53.819	ENSCCAG00000020578	-	98	61.034	Cebus_capucinus
ENSMUSG00000090854	Gm4340	100	52.431	ENSCATG00000033169	ALYREF	98	60.690	Cercocebus_atys
ENSMUSG00000090854	Gm4340	100	53.208	ENSCLAG00000015026	ALYREF	100	62.030	Chinchilla_lanigera
ENSMUSG00000090854	Gm4340	100	52.431	ENSCSAG00000002216	ALYREF	98	60.690	Chlorocebus_sabaeus
ENSMUSG00000090854	Gm4340	80	56.019	ENSCANG00000034056	ALYREF	87	65.025	Colobus_angolensis_palliatus
ENSMUSG00000090854	Gm4340	100	56.506	ENSCGRG00001018191	-	100	63.569	Cricetulus_griseus_chok1gshd
ENSMUSG00000090854	Gm4340	83	65.909	ENSCGRG00000015871	-	94	61.504	Cricetulus_griseus_crigri
ENSMUSG00000090854	Gm4340	62	50.000	ENSCSEG00000015438	-	98	50.000	Cynoglossus_semilaevis
ENSMUSG00000090854	Gm4340	79	56.938	ENSDNOG00000002563	ALYREF	84	62.338	Dasypus_novemcinctus
ENSMUSG00000090854	Gm4340	79	58.095	ENSDORG00000025849	-	73	67.773	Dipodomys_ordii
ENSMUSG00000090854	Gm4340	79	59.809	ENSETEG00000016596	ALYREF	100	67.464	Echinops_telfairi
ENSMUSG00000090854	Gm4340	100	52.778	ENSEASG00005005824	ALYREF	96	61.724	Equus_asinus_asinus
ENSMUSG00000090854	Gm4340	100	52.778	ENSECAG00000018754	ALYREF	96	61.724	Equus_caballus
ENSMUSG00000090854	Gm4340	56	61.404	ENSEEUG00000010164	ALYREF	100	64.327	Erinaceus_europaeus
ENSMUSG00000090854	Gm4340	100	52.778	ENSFCAG00000022549	ALYREF	98	61.592	Felis_catus
ENSMUSG00000090854	Gm4340	79	56.938	ENSFDAG00000001213	ALYREF	80	67.647	Fukomys_damarensis
ENSMUSG00000090854	Gm4340	100	51.748	ENSGALG00000007237	ALYREF	100	59.582	Gallus_gallus
ENSMUSG00000090854	Gm4340	100	47.059	ENSGACG00000013328	ALYREF	100	51.370	Gasterosteus_aculeatus
ENSMUSG00000090854	Gm4340	100	51.736	ENSGAGG00000008536	ALYREF	100	57.241	Gopherus_agassizii
ENSMUSG00000090854	Gm4340	100	52.778	ENSGGOG00000013935	ALYREF	99	60.690	Gorilla_gorilla
ENSMUSG00000090854	Gm4340	100	54.340	ENSHGLG00000008293	ALYREF	100	62.454	Heterocephalus_glaber_female
ENSMUSG00000090854	Gm4340	80	56.604	ENSHGLG00100006949	ALYREF	77	65.258	Heterocephalus_glaber_male
ENSMUSG00000090854	Gm4340	100	47.959	ENSHCOG00000015046	ALYREF	100	51.678	Hippocampus_comes
ENSMUSG00000090854	Gm4340	100	52.778	ENSJJAG00000004134	-	100	61.458	Jaculus_jaculus
ENSMUSG00000090854	Gm4340	100	47.751	ENSLACG00000005694	ALYREF	100	54.639	Latimeria_chalumnae
ENSMUSG00000090854	Gm4340	83	58.904	ENSLAFG00000003083	ALYREF	100	67.580	Loxodonta_africana
ENSMUSG00000090854	Gm4340	100	51.957	ENSMFAG00000001394	ALYREF	98	60.777	Macaca_fascicularis
ENSMUSG00000090854	Gm4340	100	52.431	ENSMMUG00000012884	ALYREF	98	60.690	Macaca_mulatta
ENSMUSG00000090854	Gm4340	100	52.431	ENSMNEG00000043666	ALYREF	98	60.690	Macaca_nemestrina
ENSMUSG00000090854	Gm4340	79	57.619	ENSMLEG00000043353	ALYREF	82	63.810	Mandrillus_leucophaeus
ENSMUSG00000090854	Gm4340	100	53.676	ENSMAUG00000020552	-	100	61.455	Mesocricetus_auratus
ENSMUSG00000090854	Gm4340	100	52.431	ENSMICG00000017403	ALYREF	98	61.592	Microcebus_murinus
ENSMUSG00000090854	Gm4340	100	53.962	ENSMOCG00000016792	-	100	62.264	Microtus_ochrogaster
ENSMUSG00000090854	Gm4340	99	51.389	ENSMODG00000003030	ALYREF	84	59.862	Monodelphis_domestica
ENSMUSG00000090854	Gm4340	100	48.495	ENSMALG00000019408	ALYREF	100	51.485	Monopterus_albus
ENSMUSG00000090854	Gm4340	100	56.604	MGP_CAROLIEiJ_G0014874	Alyref2	100	63.019	Mus_caroli
ENSMUSG00000090854	Gm4340	100	53.659	MGP_CAROLIEiJ_G0017529	Alyref	100	62.718	Mus_caroli
ENSMUSG00000090854	Gm4340	71	82.979	MGP_PahariEiJ_G0027255	-	85	82.199	Mus_pahari
ENSMUSG00000090854	Gm4340	100	53.659	MGP_PahariEiJ_G0018655	-	100	62.718	Mus_pahari
ENSMUSG00000090854	Gm4340	63	64.894	MGP_PahariEiJ_G0018656	-	99	67.553	Mus_pahari
ENSMUSG00000090854	Gm4340	71	82.979	MGP_PahariEiJ_G0027254	-	87	82.199	Mus_pahari
ENSMUSG00000090854	Gm4340	100	55.094	MGP_SPRETEiJ_G0015679	Alyref2	100	61.509	Mus_spretus
ENSMUSG00000090854	Gm4340	79	80.088	MGP_SPRETEiJ_G0016590	-	100	80.531	Mus_spretus
ENSMUSG00000090854	Gm4340	100	53.659	MGP_SPRETEiJ_G0018373	Alyref	100	62.718	Mus_spretus
ENSMUSG00000090854	Gm4340	100	47.751	ENSMLUG00000024976	-	100	49.141	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	50.186	ENSMLUG00000030407	-	77	49.624	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	45.675	ENSMLUG00000002626	-	98	46.367	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	44.828	ENSMLUG00000015043	-	98	48.327	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	83	47.273	ENSMLUG00000028343	-	89	48.430	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	52.490	ENSMLUG00000024447	-	77	52.490	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	79	56.938	ENSMLUG00000009555	-	66	66.029	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	99	50.566	ENSMLUG00000027352	-	79	52.273	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	45.594	ENSMLUG00000022869	-	94	48.529	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	100	40.278	ENSMLUG00000023213	-	100	39.456	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	98	45.977	ENSMLUG00000024471	-	82	49.808	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	100	49.141	ENSMLUG00000026271	-	100	48.797	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	99	51.103	ENSMLUG00000025677	-	77	51.504	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	100	49.831	ENSMLUG00000027516	-	80	55.224	Myotis_lucifugus
ENSMUSG00000090854	Gm4340	100	52.778	ENSNLEG00000010313	ALYREF	98	61.034	Nomascus_leucogenys
ENSMUSG00000090854	Gm4340	62	51.220	ENSMEUG00000002210	ALYREF	93	50.410	Notamacropus_eugenii
ENSMUSG00000090854	Gm4340	62	52.439	ENSOPRG00000005551	-	52	62.805	Ochotona_princeps
ENSMUSG00000090854	Gm4340	100	51.203	ENSODEG00000008359	ALYREF	100	61.301	Octodon_degus
ENSMUSG00000090854	Gm4340	100	47.157	ENSORLG00000012331	ALYREF	99	51.370	Oryzias_latipes
ENSMUSG00000090854	Gm4340	89	53.361	ENSOGAG00000012409	ALYREF	85	62.185	Otolemur_garnettii
ENSMUSG00000090854	Gm4340	79	58.373	ENSOARG00000017932	ALYREF	81	60.956	Ovis_aries
ENSMUSG00000090854	Gm4340	100	52.778	ENSPPRG00000010829	ALYREF	98	61.592	Panthera_pardus
ENSMUSG00000090854	Gm4340	100	52.778	ENSPTRG00000009774	ALYREF	98	61.034	Pan_troglodytes
ENSMUSG00000090854	Gm4340	100	52.431	ENSPANG00000019265	ALYREF	98	60.690	Papio_anubis
ENSMUSG00000090854	Gm4340	60	52.830	ENSPSIG00000017541	ALYREF	95	62.112	Pelodiscus_sinensis
ENSMUSG00000090854	Gm4340	100	52.431	ENSPPYG00000008749	ALYREF	98	61.034	Pongo_abelii
ENSMUSG00000090854	Gm4340	100	52.431	ENSPCOG00000020874	ALYREF	98	61.592	Propithecus_coquereli
ENSMUSG00000090854	Gm4340	79	57.895	ENSPVAG00000017866	ALYREF	100	55.052	Pteropus_vampyrus
ENSMUSG00000090854	Gm4340	57	61.272	ENSRNOG00000036687	Alyref	91	65.698	Rattus_norvegicus
ENSMUSG00000090854	Gm4340	77	57.561	ENSRBIG00000039651	ALYREF	71	66.019	Rhinopithecus_bieti
ENSMUSG00000090854	Gm4340	93	53.571	ENSRROG00000045364	ALYREF	87	62.055	Rhinopithecus_roxellana
ENSMUSG00000090854	Gm4340	83	56.306	ENSSHAG00000010459	ALYREF	95	66.204	Sarcophilus_harrisii
ENSMUSG00000090854	Gm4340	100	42.807	ENSSDUG00000003992	-	100	44.147	Seriola_dumerili
ENSMUSG00000090854	Gm4340	99	43.509	ENSSLDG00000005386	-	100	44.371	Seriola_lalandi_dorsalis
ENSMUSG00000090854	Gm4340	100	51.211	ENSSPUG00000004600	ALYREF	100	58.276	Sphenodon_punctatus
ENSMUSG00000090854	Gm4340	80	52.036	ENSSPAG00000011178	ALYREF	97	49.511	Stegastes_partitus
ENSMUSG00000090854	Gm4340	100	53.310	ENSSSCG00000032655	ALYREF	100	61.806	Sus_scrofa
ENSMUSG00000090854	Gm4340	60	53.459	ENSTGUG00000003513	ALYREF	100	60.479	Taeniopygia_guttata
ENSMUSG00000090854	Gm4340	83	54.626	ENSTRUG00000008828	ALYREF	100	51.495	Takifugu_rubripes
ENSMUSG00000090854	Gm4340	79	56.938	ENSTBEG00000005834	ALYREF	100	66.190	Tupaia_belangeri
ENSMUSG00000090854	Gm4340	100	51.389	ENSTTRG00000012275	ALYREF	100	60.554	Tursiops_truncatus
ENSMUSG00000090854	Gm4340	90	46.091	ENSUAMG00000016931	ALYREF	78	54.321	Ursus_americanus
ENSMUSG00000090854	Gm4340	90	46.091	ENSUMAG00000016384	ALYREF	78	54.321	Ursus_maritimus
ENSMUSG00000090854	Gm4340	100	55.224	ENSXETG00000005391	alyref	100	58.736	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process