EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000090919 (Gene tree)
Gene ID: 241989
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 6023 bases
Position: chr3:46442197-46448219
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000126224	RRM_5	PF13893.6	2e-13	1	3
ENSMUSP00000126224	RRM_5	PF13893.6	2e-13	2	3
ENSMUSP00000126224	RRM_5	PF13893.6	2e-13	3	3
ENSMUSP00000141300	RRM_5	PF13893.6	2e-13	1	3
ENSMUSP00000141300	RRM_5	PF13893.6	2e-13	2	3
ENSMUSP00000141300	RRM_5	PF13893.6	2e-13	3	3
ENSMUSP00000126224	RRM_1	PF00076.22	6e-83	1	4
ENSMUSP00000126224	RRM_1	PF00076.22	6e-83	2	4
ENSMUSP00000126224	RRM_1	PF00076.22	6e-83	3	4
ENSMUSP00000126224	RRM_1	PF00076.22	6e-83	4	4
ENSMUSP00000141300	RRM_1	PF00076.22	6e-83	1	4
ENSMUSP00000141300	RRM_1	PF00076.22	6e-83	2	4
ENSMUSP00000141300	RRM_1	PF00076.22	6e-83	3	4
ENSMUSP00000141300	RRM_1	PF00076.22	6e-83	4	4
ENSMUSP00000141684	RRM_1	PF00076.22	2.3e-40	1	2
ENSMUSP00000141684	RRM_1	PF00076.22	2.3e-40	2	2
ENSMUSP00000141854	RRM_1	PF00076.22	2.5e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000166505	-	5218	XM_011239969	ENSMUSP00000126224	370 (aa)	XP_011238271	G5E8X2
ENSMUST00000195436	-	723	-	ENSMUSP00000141684	172 (aa)	-	A0A0A6YWT2
ENSMUST00000192793	-	5252	-	ENSMUSP00000141300	370 (aa)	-	G5E8X2
ENSMUST00000195537	-	467	-	ENSMUSP00000141854	50 (aa)	-	A0A0A6YX62

Gene Model

Click here to download ENSMUSG00000090919's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000090919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000090919	Pabpc4l	52	31.461	ENSMUSG00000028676	Srsf10	50	32.500
ENSMUSG00000090919	Pabpc4l	96	38.636	ENSMUSG00000068856	Sf3b4	54	38.636
ENSMUSG00000090919	Pabpc4l	97	69.277	ENSMUSG00000022283	Pabpc1	96	71.901
ENSMUSG00000090919	Pabpc4l	95	30.539	ENSMUSG00000071337	Tia1	95	30.000
ENSMUSG00000090919	Pabpc4l	83	34.286	ENSMUSG00000031167	Rbm3	90	35.385
ENSMUSG00000090919	Pabpc4l	94	33.333	ENSMUSG00000030846	Tial1	99	31.618
ENSMUSG00000090919	Pabpc4l	98	64.497	ENSMUSG00000046173	Pabpc6	58	64.497
ENSMUSG00000090919	Pabpc4l	96	30.065	ENSMUSG00000028546	Elavl4	70	35.484
ENSMUSG00000090919	Pabpc4l	94	30.464	ENSMUSG00000040028	Elavl1	91	30.464
ENSMUSG00000090919	Pabpc4l	95	68.098	ENSMUSG00000051732	Pabpc2	61	64.167
ENSMUSG00000090919	Pabpc4l	97	57.865	ENSMUSG00000034732	Pabpc5	96	57.967
ENSMUSG00000090919	Pabpc4l	99	69.041	ENSMUSG00000011257	Pabpc4	97	70.000
ENSMUSG00000090919	Pabpc4l	96	34.940	ENSMUSG00000008489	Elavl2	89	34.940
ENSMUSG00000090919	Pabpc4l	96	36.145	ENSMUSG00000003410	Elavl3	90	36.145
ENSMUSG00000090919	Pabpc4l	50	30.476	ENSMUSG00000101667	Gm29289	61	30.476
ENSMUSG00000090919	Pabpc4l	95	60.736	ENSMUSG00000054582	Pabpc1l	59	60.736
ENSMUSG00000090919	Pabpc4l	89	31.875	ENSMUSG00000028898	Trnau1ap	88	34.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000090919	Pabpc4l	100	81.351	ENSG00000254535	PABPC4L	100	81.351	Homo_sapiens
ENSMUSG00000090919	Pabpc4l	100	82.000	ENSANAG00000017199	PABPC4L	87	80.541	Aotus_nancymaae
ENSMUSG00000090919	Pabpc4l	100	78.488	ENSBTAG00000046902	PABPC4L	99	79.404	Bos_taurus
ENSMUSG00000090919	Pabpc4l	100	81.081	ENSCJAG00000045332	PABPC4L	86	81.081	Callithrix_jacchus
ENSMUSG00000090919	Pabpc4l	100	74.000	ENSCAFG00020019182	-	55	70.349	Canis_lupus_dingo
ENSMUSG00000090919	Pabpc4l	100	78.488	ENSCHIG00000007231	PABPC4L	99	79.404	Capra_hircus
ENSMUSG00000090919	Pabpc4l	98	72.836	ENSCAPG00000000555	PABPC4L	100	72.836	Cavia_aperea
ENSMUSG00000090919	Pabpc4l	100	70.000	ENSCPOG00000033167	PABPC4L	100	70.000	Cavia_porcellus
ENSMUSG00000090919	Pabpc4l	100	80.811	ENSCCAG00000031681	PABPC4L	86	80.811	Cebus_capucinus
ENSMUSG00000090919	Pabpc4l	100	77.326	ENSCLAG00000017628	PABPC4L	100	76.757	Chinchilla_lanigera
ENSMUSG00000090919	Pabpc4l	100	82.000	ENSCANG00000037677	PABPC4L	99	81.395	Colobus_angolensis_palliatus
ENSMUSG00000090919	Pabpc4l	100	92.000	ENSCGRG00001002070	Pabpc4l	100	88.108	Cricetulus_griseus_chok1gshd
ENSMUSG00000090919	Pabpc4l	100	92.000	ENSCGRG00000020086	Pabpc4l	100	88.108	Cricetulus_griseus_crigri
ENSMUSG00000090919	Pabpc4l	100	79.459	ENSDNOG00000031077	PABPC4L	95	79.459	Dasypus_novemcinctus
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSEASG00005007883	PABPC4L	99	79.651	Equus_asinus_asinus
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSECAG00000031416	PABPC4L	99	79.651	Equus_caballus
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSFCAG00000028270	PABPC4L	99	78.591	Felis_catus
ENSMUSG00000090919	Pabpc4l	100	73.256	ENSFDAG00000019606	PABPC4L	99	73.256	Fukomys_damarensis
ENSMUSG00000090919	Pabpc4l	100	80.814	ENSGGOG00000024991	PABPC4L	100	80.811	Gorilla_gorilla
ENSMUSG00000090919	Pabpc4l	99	75.339	ENSHGLG00000020104	PABPC4L	99	75.339	Heterocephalus_glaber_female
ENSMUSG00000090919	Pabpc4l	99	75.339	ENSHGLG00100020648	PABPC4L	99	75.339	Heterocephalus_glaber_male
ENSMUSG00000090919	Pabpc4l	100	80.054	ENSSTOG00000019472	PABPC4L	99	80.054	Ictidomys_tridecemlineatus
ENSMUSG00000090919	Pabpc4l	100	84.000	ENSJJAG00000004090	Pabpc4l	99	77.907	Jaculus_jaculus
ENSMUSG00000090919	Pabpc4l	100	92.000	ENSMAUG00000016313	Pabpc4l	100	88.378	Mesocricetus_auratus
ENSMUSG00000090919	Pabpc4l	100	80.270	ENSMICG00000029683	PABPC4L	100	80.270	Microcebus_murinus
ENSMUSG00000090919	Pabpc4l	100	90.000	ENSMOCG00000007551	Pabpc4l	100	89.459	Microtus_ochrogaster
ENSMUSG00000090919	Pabpc4l	100	98.649	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.649	Mus_caroli
ENSMUSG00000090919	Pabpc4l	100	98.649	MGP_PahariEiJ_G0026409	Pabpc4l	100	98.649	Mus_pahari
ENSMUSG00000090919	Pabpc4l	100	100.000	MGP_SPRETEiJ_G0025903	Pabpc4l	100	100.000	Mus_spretus
ENSMUSG00000090919	Pabpc4l	100	75.581	ENSMLUG00000008254	PABPC4L	99	75.581	Myotis_lucifugus
ENSMUSG00000090919	Pabpc4l	100	86.000	ENSNGAG00000001502	Pabpc4l	100	85.405	Nannospalax_galili
ENSMUSG00000090919	Pabpc4l	100	81.081	ENSNLEG00000019300	PABPC4L	100	81.081	Nomascus_leucogenys
ENSMUSG00000090919	Pabpc4l	100	78.000	ENSOGAG00000026166	PABPC4L	100	74.595	Otolemur_garnettii
ENSMUSG00000090919	Pabpc4l	100	80.814	ENSPPAG00000043745	PABPC4L	93	80.814	Pan_paniscus
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSPPRG00000018628	PABPC4L	99	78.320	Panthera_pardus
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSPTIG00000010106	PABPC4L	99	78.591	Panthera_tigris_altaica
ENSMUSG00000090919	Pabpc4l	100	80.814	ENSPTRG00000045513	-	78	80.805	Pan_troglodytes
ENSMUSG00000090919	Pabpc4l	100	90.000	ENSPEMG00000012565	Pabpc4l	100	89.189	Peromyscus_maniculatus_bairdii
ENSMUSG00000090919	Pabpc4l	100	80.811	ENSPCOG00000025578	PABPC4L	100	80.811	Propithecus_coquereli
ENSMUSG00000090919	Pabpc4l	100	93.514	ENSRNOG00000029749	Pabpc4l	100	93.514	Rattus_norvegicus
ENSMUSG00000090919	Pabpc4l	100	80.814	ENSRBIG00000030229	PABPC4L	99	80.814	Rhinopithecus_bieti
ENSMUSG00000090919	Pabpc4l	100	80.814	ENSRROG00000020367	PABPC4L	99	80.814	Rhinopithecus_roxellana
ENSMUSG00000090919	Pabpc4l	100	80.541	ENSSBOG00000016382	PABPC4L	100	80.541	Saimiri_boliviensis_boliviensis
ENSMUSG00000090919	Pabpc4l	100	80.000	ENSSSCG00000009067	PABPC4L	99	73.171	Sus_scrofa
ENSMUSG00000090919	Pabpc4l	100	78.000	ENSUAMG00000001289	PABPC4L	99	78.320	Ursus_americanus
ENSMUSG00000090919	Pabpc4l	100	78.000	ENSUMAG00000014887	PABPC4L	99	78.320	Ursus_maritimus
ENSMUSG00000090919	Pabpc4l	100	72.000	ENSVVUG00000011060	-	75	68.293	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008150	biological_process	-	ND	Process
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component