EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000102252 (Gene tree)
Gene ID: 20646
Gene Symbol: Snrpn
Alias: 2410045I01Rik|Peg4|Pwcr1
Full Name: small nuclear ribonucleoprotein N
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 157725 bases
Position: chr7:59982495-60140219
Accession: 98347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000055941	LSM	PF01423.22	1.6e-19	1	1
ENSMUSP00000096003	LSM	PF01423.22	1.6e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000059305	-	1932	-	ENSMUSP00000055941	240 (aa)	-	P63163
ENSMUST00000098402	-	2076	-	ENSMUSP00000096003	240 (aa)	-	P63163

Gene Model

Click here to download ENSMUSG00000102252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000102252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000102252	Snrpn	92	93.213	ENSMUSG00000027404	Snrpb	96	93.213

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000102252	Snrpn	100	100.000	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSMUSG00000102252	Snrpn	99	99.582	ENSAMEG00000007034	SNRPN	98	99.582	Ailuropoda_melanoleuca
ENSMUSG00000102252	Snrpn	100	100.000	ENSANAG00000034241	SNRPN	100	100.000	Aotus_nancymaae
ENSMUSG00000102252	Snrpn	100	98.750	ENSBTAG00000008251	SNRPN	100	98.750	Bos_taurus
ENSMUSG00000102252	Snrpn	95	99.561	ENSCJAG00000042622	-	95	99.561	Callithrix_jacchus
ENSMUSG00000102252	Snrpn	100	100.000	ENSCJAG00000003759	-	100	100.000	Callithrix_jacchus
ENSMUSG00000102252	Snrpn	100	99.583	ENSCAFG00000010127	SNRPN	100	99.583	Canis_familiaris
ENSMUSG00000102252	Snrpn	100	99.583	ENSCAFG00020024075	SNRPN	100	99.583	Canis_lupus_dingo
ENSMUSG00000102252	Snrpn	100	98.750	ENSCHIG00000017477	SNRPN	100	98.750	Capra_hircus
ENSMUSG00000102252	Snrpn	100	100.000	ENSTSYG00000005248	SNRPN	100	100.000	Carlito_syrichta
ENSMUSG00000102252	Snrpn	100	100.000	ENSCAPG00000003047	SNRPN	100	100.000	Cavia_aperea
ENSMUSG00000102252	Snrpn	100	100.000	ENSCPOG00000020270	SNRPN	100	100.000	Cavia_porcellus
ENSMUSG00000102252	Snrpn	100	100.000	ENSCCAG00000024231	SNRPN	100	100.000	Cebus_capucinus
ENSMUSG00000102252	Snrpn	100	100.000	ENSCATG00000032518	SNRPN	100	100.000	Cercocebus_atys
ENSMUSG00000102252	Snrpn	100	100.000	ENSCLAG00000011376	SNRPN	100	100.000	Chinchilla_lanigera
ENSMUSG00000102252	Snrpn	100	100.000	ENSCSAG00000006406	SNRPN	100	100.000	Chlorocebus_sabaeus
ENSMUSG00000102252	Snrpn	98	98.718	ENSCHOG00000001846	SNRPN	88	98.718	Choloepus_hoffmanni
ENSMUSG00000102252	Snrpn	100	100.000	ENSCANG00000041156	SNRPN	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000102252	Snrpn	100	99.583	ENSCGRG00001004136	Snrpn	100	99.583	Cricetulus_griseus_chok1gshd
ENSMUSG00000102252	Snrpn	100	99.167	ENSCGRG00000001621	Snrpn	100	99.167	Cricetulus_griseus_crigri
ENSMUSG00000102252	Snrpn	72	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
ENSMUSG00000102252	Snrpn	99	99.163	ENSDNOG00000037060	SNRPN	98	99.163	Dasypus_novemcinctus
ENSMUSG00000102252	Snrpn	100	99.583	ENSDORG00000004527	Snrpn	100	99.583	Dipodomys_ordii
ENSMUSG00000102252	Snrpn	100	99.583	ENSEASG00005017871	SNRPN	100	99.583	Equus_asinus_asinus
ENSMUSG00000102252	Snrpn	100	99.583	ENSECAG00000018148	SNRPN	100	99.583	Equus_caballus
ENSMUSG00000102252	Snrpn	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSMUSG00000102252	Snrpn	100	99.583	ENSFCAG00000022298	-	100	99.583	Felis_catus
ENSMUSG00000102252	Snrpn	76	85.792	ENSFDAG00000010528	-	86	85.792	Fukomys_damarensis
ENSMUSG00000102252	Snrpn	100	99.583	ENSFDAG00000016578	-	100	99.583	Fukomys_damarensis
ENSMUSG00000102252	Snrpn	74	76.836	ENSGMOG00000018161	SNRPN	74	76.190	Gadus_morhua
ENSMUSG00000102252	Snrpn	90	73.488	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
ENSMUSG00000102252	Snrpn	100	100.000	ENSGGOG00000003988	SNRPN	100	100.000	Gorilla_gorilla
ENSMUSG00000102252	Snrpn	100	100.000	ENSHGLG00000011924	SNRPN	100	100.000	Heterocephalus_glaber_female
ENSMUSG00000102252	Snrpn	90	80.930	ENSHGLG00000020936	-	88	79.812	Heterocephalus_glaber_female
ENSMUSG00000102252	Snrpn	89	91.549	ENSHGLG00000019812	-	89	91.080	Heterocephalus_glaber_female
ENSMUSG00000102252	Snrpn	100	85.417	ENSHGLG00000002327	-	88	84.977	Heterocephalus_glaber_female
ENSMUSG00000102252	Snrpn	100	100.000	ENSHGLG00100016559	SNRPN	100	100.000	Heterocephalus_glaber_male
ENSMUSG00000102252	Snrpn	89	91.549	ENSHGLG00100021056	-	89	91.080	Heterocephalus_glaber_male
ENSMUSG00000102252	Snrpn	100	82.917	ENSHGLG00100004881	-	88	83.099	Heterocephalus_glaber_male
ENSMUSG00000102252	Snrpn	100	100.000	ENSSTOG00000001339	SNRPN	100	100.000	Ictidomys_tridecemlineatus
ENSMUSG00000102252	Snrpn	99	99.582	ENSLAFG00000009458	SNRPN	99	99.582	Loxodonta_africana
ENSMUSG00000102252	Snrpn	100	100.000	ENSMFAG00000042235	SNRPN	100	100.000	Macaca_fascicularis
ENSMUSG00000102252	Snrpn	100	100.000	ENSMMUG00000023139	SNURF	100	100.000	Macaca_mulatta
ENSMUSG00000102252	Snrpn	100	100.000	ENSMNEG00000031291	SNRPN	100	100.000	Macaca_nemestrina
ENSMUSG00000102252	Snrpn	100	100.000	ENSMLEG00000038837	SNRPN	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000102252	Snrpn	92	85.909	ENSMGAG00000008696	SNRPN	92	85.909	Meleagris_gallopavo
ENSMUSG00000102252	Snrpn	100	100.000	ENSMAUG00000000051	Snrpn	100	100.000	Mesocricetus_auratus
ENSMUSG00000102252	Snrpn	100	100.000	ENSMICG00000042356	SNRPN	100	100.000	Microcebus_murinus
ENSMUSG00000102252	Snrpn	100	100.000	ENSMOCG00000015350	Snrpn	100	100.000	Microtus_ochrogaster
ENSMUSG00000102252	Snrpn	92	94.118	ENSMODG00000013926	-	92	94.118	Monodelphis_domestica
ENSMUSG00000102252	Snrpn	100	100.000	MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	Mus_caroli
ENSMUSG00000102252	Snrpn	100	100.000	MGP_PahariEiJ_G0013040	Snrpn	100	100.000	Mus_pahari
ENSMUSG00000102252	Snrpn	100	100.000	MGP_SPRETEiJ_G0030918	Snrpn	100	100.000	Mus_spretus
ENSMUSG00000102252	Snrpn	88	51.659	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSMUSG00000102252	Snrpn	100	99.583	ENSMPUG00000014638	-	100	99.583	Mustela_putorius_furo
ENSMUSG00000102252	Snrpn	85	60.784	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
ENSMUSG00000102252	Snrpn	95	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSMUSG00000102252	Snrpn	99	99.163	ENSMLUG00000023361	-	98	99.163	Myotis_lucifugus
ENSMUSG00000102252	Snrpn	100	100.000	ENSNGAG00000000181	Snrpn	100	100.000	Nannospalax_galili
ENSMUSG00000102252	Snrpn	100	83.750	ENSNLEG00000001376	SNRPN	99	83.750	Nomascus_leucogenys
ENSMUSG00000102252	Snrpn	98	81.197	ENSODEG00000016065	-	87	86.473	Octodon_degus
ENSMUSG00000102252	Snrpn	100	99.167	ENSODEG00000020110	-	100	99.167	Octodon_degus
ENSMUSG00000102252	Snrpn	100	99.583	ENSODEG00000013478	-	100	99.583	Octodon_degus
ENSMUSG00000102252	Snrpn	100	95.833	ENSODEG00000019708	-	89	99.061	Octodon_degus
ENSMUSG00000102252	Snrpn	100	99.585	ENSOCUG00000003532	-	100	99.585	Oryctolagus_cuniculus
ENSMUSG00000102252	Snrpn	74	92.090	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
ENSMUSG00000102252	Snrpn	74	92.090	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
ENSMUSG00000102252	Snrpn	74	92.655	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
ENSMUSG00000102252	Snrpn	100	100.000	ENSOGAG00000007392	SNRPN	100	100.000	Otolemur_garnettii
ENSMUSG00000102252	Snrpn	100	98.750	ENSOARG00000009080	SNRPN	100	98.750	Ovis_aries
ENSMUSG00000102252	Snrpn	100	100.000	ENSPPAG00000027650	SNRPN	100	100.000	Pan_paniscus
ENSMUSG00000102252	Snrpn	97	69.231	ENSPPAG00000034049	-	65	79.720	Pan_paniscus
ENSMUSG00000102252	Snrpn	85	64.390	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
ENSMUSG00000102252	Snrpn	100	99.583	ENSPPRG00000019878	-	100	99.583	Panthera_pardus
ENSMUSG00000102252	Snrpn	100	99.167	ENSPTIG00000004537	SNRPN	100	99.167	Panthera_tigris_altaica
ENSMUSG00000102252	Snrpn	97	69.658	ENSPTRG00000052400	-	65	80.420	Pan_troglodytes
ENSMUSG00000102252	Snrpn	100	100.000	ENSPTRG00000006826	SNRPN	100	100.000	Pan_troglodytes
ENSMUSG00000102252	Snrpn	100	100.000	ENSPANG00000020142	SNRPN	100	100.000	Papio_anubis
ENSMUSG00000102252	Snrpn	100	100.000	ENSPEMG00000012911	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000102252	Snrpn	89	95.794	ENSPEMG00000020979	-	89	95.775	Peromyscus_maniculatus_bairdii
ENSMUSG00000102252	Snrpn	100	89.583	ENSPEMG00000013920	-	100	89.583	Peromyscus_maniculatus_bairdii
ENSMUSG00000102252	Snrpn	76	97.253	ENSPCIG00000004699	-	68	94.811	Phascolarctos_cinereus
ENSMUSG00000102252	Snrpn	72	93.642	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
ENSMUSG00000102252	Snrpn	100	100.000	ENSPPYG00000006269	SNURF	100	100.000	Pongo_abelii
ENSMUSG00000102252	Snrpn	100	100.000	ENSPCOG00000014231	SNRPN	100	100.000	Propithecus_coquereli
ENSMUSG00000102252	Snrpn	100	100.000	ENSRNOG00000059764	Snrpn	100	100.000	Rattus_norvegicus
ENSMUSG00000102252	Snrpn	100	100.000	ENSRBIG00000041765	SNRPN	100	100.000	Rhinopithecus_bieti
ENSMUSG00000102252	Snrpn	100	100.000	ENSRROG00000035157	SNRPN	100	100.000	Rhinopithecus_roxellana
ENSMUSG00000102252	Snrpn	100	100.000	ENSSBOG00000000110	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000102252	Snrpn	100	98.750	ENSSBOG00000024929	-	100	98.750	Saimiri_boliviensis_boliviensis
ENSMUSG00000102252	Snrpn	76	96.721	ENSSHAG00000010257	-	87	94.366	Sarcophilus_harrisii
ENSMUSG00000102252	Snrpn	99	77.824	ENSSARG00000000072	SNRPN	100	77.824	Sorex_araneus
ENSMUSG00000102252	Snrpn	100	99.167	ENSSSCG00000028124	SNRPN	100	99.167	Sus_scrofa
ENSMUSG00000102252	Snrpn	100	98.750	ENSTTRG00000010966	SNRPN	89	98.750	Tursiops_truncatus
ENSMUSG00000102252	Snrpn	93	99.552	ENSUAMG00000016284	SNRPN	78	99.552	Ursus_americanus
ENSMUSG00000102252	Snrpn	100	99.583	ENSUMAG00000025589	SNRPN	100	99.583	Ursus_maritimus
ENSMUSG00000102252	Snrpn	95	99.563	ENSVVUG00000017971	SNRPN	94	99.563	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	10318933.	TAS	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	-	ISO	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component