EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000109516 (Gene tree)
Gene ID: 628475
Gene Symbol: Gm6882
Alias: -
Full Name: predicted gene 6882
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 6888 bases
Position: chr7:21425858-21432745
Accession: 3645601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000136005	RIO1	PF01163.22	0.00031	1	1
ENSMUSP00000146341	RIO1	PF01163.22	0.00031	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000207192	-	2365	-	ENSMUSP00000146341	313 (aa)	-	J3KMT3
ENSMUST00000177741	-	942	XM_017312482	ENSMUSP00000136005	313 (aa)	XP_017167971	J3KMT3

Gene Model

Click here to download ENSMUSG00000109516's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000109516's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000109516	Gm6882	92	96.875	ENSMUSG00000109060	Gm4513	96	96.875
ENSMUSG00000109516	Gm6882	89	39.286	ENSMUSG00000067941	Gm7168	55	39.286
ENSMUSG00000109516	Gm6882	90	37.943	ENSMUSG00000079156	Smok3b	56	37.943
ENSMUSG00000109516	Gm6882	92	96.528	ENSMUSG00000095363	Gm4567	96	96.528
ENSMUSG00000109516	Gm6882	89	40.000	ENSMUSG00000101307	Gm7358	55	40.000
ENSMUSG00000109516	Gm6882	69	32.599	ENSMUSG00000034974	Dapk3	98	32.836
ENSMUSG00000109516	Gm6882	82	33.333	ENSMUSG00000032380	Dapk2	72	33.333
ENSMUSG00000109516	Gm6882	55	52.000	ENSMUSG00000024969	Mark2	91	52.000
ENSMUSG00000109516	Gm6882	92	96.181	ENSMUSG00000096283	Gm6176	96	96.181
ENSMUSG00000109516	Gm6882	92	96.528	ENSMUSG00000094682	Gm6902	96	96.528
ENSMUSG00000109516	Gm6882	92	96.875	ENSMUSG00000109396	Gm4565	96	96.875
ENSMUSG00000109516	Gm6882	100	99.361	ENSMUSG00000095683	Gm10662	100	99.361
ENSMUSG00000109516	Gm6882	66	33.175	ENSMUSG00000020389	Cdkl3	98	34.043
ENSMUSG00000109516	Gm6882	83	38.462	ENSMUSG00000044624	Gm4922	52	38.462
ENSMUSG00000109516	Gm6882	100	99.361	ENSMUSG00000095976	Gm5891	100	99.361
ENSMUSG00000109516	Gm6882	92	39.446	ENSMUSG00000073458	Smok2a	57	39.446
ENSMUSG00000109516	Gm6882	91	38.947	ENSMUSG00000073457	Smok2b	59	38.947
ENSMUSG00000109516	Gm6882	92	96.528	ENSMUSG00000101436	Gm5157	96	96.528
ENSMUSG00000109516	Gm6882	89	39.643	ENSMUSG00000101361	Gm7356	55	39.643
ENSMUSG00000109516	Gm6882	92	38.408	ENSMUSG00000075598	Smok3c	57	38.408
ENSMUSG00000109516	Gm6882	90	37.943	ENSMUSG00000075599	Smok3a	56	37.943
ENSMUSG00000109516	Gm6882	92	96.528	ENSMUSG00000095190	Gm10668	96	96.528

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000109516	Gm6882	96	39.869	ENSBTAG00000052622	-	94	39.869	Bos_taurus
ENSMUSG00000109516	Gm6882	91	40.690	ENSCPOG00000034310	-	87	40.690	Cavia_porcellus
ENSMUSG00000109516	Gm6882	78	45.161	ENSCING00000008201	-	75	45.161	Ciona_intestinalis
ENSMUSG00000109516	Gm6882	83	39.615	ENSCGRG00001006023	Gm4922	52	39.615	Cricetulus_griseus_chok1gshd
ENSMUSG00000109516	Gm6882	94	41.297	ENSCGRG00001007918	-	60	41.297	Cricetulus_griseus_chok1gshd
ENSMUSG00000109516	Gm6882	91	40.909	ENSCGRG00001010553	-	58	40.909	Cricetulus_griseus_chok1gshd
ENSMUSG00000109516	Gm6882	83	39.615	ENSCGRG00000009530	Gm4922	52	39.615	Cricetulus_griseus_crigri
ENSMUSG00000109516	Gm6882	86	40.299	ENSFDAG00000016208	-	66	38.644	Fukomys_damarensis
ENSMUSG00000109516	Gm6882	90	39.362	MGP_CAROLIEiJ_G0021080	-	58	39.362	Mus_caroli
ENSMUSG00000109516	Gm6882	90	39.362	MGP_CAROLIEiJ_G0021081	-	58	39.362	Mus_caroli
ENSMUSG00000109516	Gm6882	90	39.362	MGP_CAROLIEiJ_G0021082	-	58	39.362	Mus_caroli
ENSMUSG00000109516	Gm6882	83	38.077	MGP_CAROLIEiJ_G0015144	Gm4922	52	38.077	Mus_caroli
ENSMUSG00000109516	Gm6882	90	39.362	MGP_CAROLIEiJ_G0021079	-	58	39.362	Mus_caroli
ENSMUSG00000109516	Gm6882	91	38.462	MGP_PahariEiJ_G0023763	Gm4922	58	38.462	Mus_pahari
ENSMUSG00000109516	Gm6882	83	38.077	MGP_SPRETEiJ_G0015952	Gm4922	52	38.077	Mus_spretus
ENSMUSG00000109516	Gm6882	90	42.403	ENSNGAG00000008026	-	56	42.403	Nannospalax_galili
ENSMUSG00000109516	Gm6882	81	39.370	ENSOGAG00000033945	-	93	39.453	Otolemur_garnettii
ENSMUSG00000109516	Gm6882	91	39.298	ENSPEMG00000022024	-	72	39.298	Peromyscus_maniculatus_bairdii
ENSMUSG00000109516	Gm6882	92	41.667	ENSRNOG00000024200	LOC690235	57	41.667	Rattus_norvegicus
ENSMUSG00000109516	Gm6882	92	36.897	ENSRNOG00000030145	RGD1561667	57	36.897	Rattus_norvegicus
ENSMUSG00000109516	Gm6882	82	39.300	ENSRNOG00000025799	RGD1560303	52	39.300	Rattus_norvegicus
ENSMUSG00000109516	Gm6882	92	37.847	ENSRNOG00000059551	RGD1560718	57	37.847	Rattus_norvegicus
ENSMUSG00000109516	Gm6882	95	63.087	ENSRNOG00000028913	AABR07028872.1	95	63.087	Rattus_norvegicus
ENSMUSG00000109516	Gm6882	92	37.847	ENSRNOG00000052093	Smok2a	57	37.847	Rattus_norvegicus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0004674	protein serine/threonine kinase activity	21873635.	IBA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0035556	intracellular signal transduction	21873635.	IBA	Process
GO:0050321	tau-protein kinase activity	21873635.	IBA	Function