EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005000849 (Gene tree)
Gene ID: 101475440
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 9917 bases
Position: chrAGTA05000116.1:86502-96418
Accession: 101475440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005000994	RRM_1	PF00076.22	3.1e-16	1	1
ENSMZEP00005000981	RRM_1	PF00076.22	3.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005001060	-	2892	XM_004574135	ENSMZEP00005000981	244 (aa)	XP_004574192	UPI0003297CF7
ENSMZET00005001073	-	696	-	ENSMZEP00005000994	231 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005000849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005000849's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005000849	-	92	70.776	ENSG00000132819	RBM38	94	87.288	Homo_sapiens
ENSMZEG00005000849	-	100	64.567	ENSAPOG00000003301	rbm38	98	64.567	Acanthochromis_polyacanthus
ENSMZEG00005000849	-	100	91.393	ENSAPOG00000009939	-	100	91.393	Acanthochromis_polyacanthus
ENSMZEG00005000849	-	100	97.835	ENSACIG00000012502	-	100	97.835	Amphilophus_citrinellus
ENSMZEG00005000849	-	100	64.143	ENSACIG00000000010	rbm38	98	64.143	Amphilophus_citrinellus
ENSMZEG00005000849	-	97	90.295	ENSAOCG00000012559	RBM38	100	90.295	Amphiprion_ocellaris
ENSMZEG00005000849	-	100	64.567	ENSAOCG00000013497	-	98	64.567	Amphiprion_ocellaris
ENSMZEG00005000849	-	96	68.750	ENSAPEG00000013137	rbm38	98	64.567	Amphiprion_percula
ENSMZEG00005000849	-	100	90.164	ENSAPEG00000023581	-	100	90.164	Amphiprion_percula
ENSMZEG00005000849	-	100	63.636	ENSATEG00000016366	rbm38	97	65.368	Anabas_testudineus
ENSMZEG00005000849	-	100	93.443	ENSATEG00000016710	-	100	93.443	Anabas_testudineus
ENSMZEG00005000849	-	95	68.511	ENSACAG00000016238	RBM38	95	64.876	Anolis_carolinensis
ENSMZEG00005000849	-	92	71.689	ENSANAG00000031959	RBM38	78	94.681	Aotus_nancymaae
ENSMZEG00005000849	-	100	100.000	ENSACLG00000019514	-	100	100.000	Astatotilapia_calliptera
ENSMZEG00005000849	-	100	79.098	ENSAMXG00000015601	-	100	79.098	Astyanax_mexicanus
ENSMZEG00005000849	-	96	65.812	ENSAMXG00000038120	rbm38	97	65.812	Astyanax_mexicanus
ENSMZEG00005000849	-	92	70.183	ENSBTAG00000008105	RBM38	89	70.046	Bos_taurus
ENSMZEG00005000849	-	55	63.566	WBGene00006321	sup-12	63	78.947	Caenorhabditis_elegans
ENSMZEG00005000849	-	92	71.689	ENSCJAG00000019139	RBM38	78	94.681	Callithrix_jacchus
ENSMZEG00005000849	-	92	72.018	ENSCAFG00020021943	RBM38	89	72.018	Canis_lupus_dingo
ENSMZEG00005000849	-	92	69.725	ENSCHIG00000002609	RBM38	89	69.585	Capra_hircus
ENSMZEG00005000849	-	92	70.776	ENSCPOG00000012781	RBM38	89	70.642	Cavia_porcellus
ENSMZEG00005000849	-	92	71.689	ENSCCAG00000036872	RBM38	78	94.681	Cebus_capucinus
ENSMZEG00005000849	-	92	70.776	ENSCATG00000032133	RBM38	78	94.681	Cercocebus_atys
ENSMZEG00005000849	-	92	70.320	ENSCLAG00000005906	RBM38	92	69.725	Chinchilla_lanigera
ENSMZEG00005000849	-	92	70.776	ENSCSAG00000015503	RBM38	89	70.642	Chlorocebus_sabaeus
ENSMZEG00005000849	-	94	71.749	ENSCPBG00000024059	RBM38	100	70.270	Chrysemys_picta_bellii
ENSMZEG00005000849	-	64	62.179	ENSCING00000025102	-	96	50.220	Ciona_intestinalis
ENSMZEG00005000849	-	65	63.057	ENSCSAVG00000001132	-	57	62.987	Ciona_savignyi
ENSMZEG00005000849	-	95	53.153	ENSCANG00000030105	-	80	51.802	Colobus_angolensis_palliatus
ENSMZEG00005000849	-	92	69.406	ENSCGRG00001012928	Rbm38	89	68.349	Cricetulus_griseus_chok1gshd
ENSMZEG00005000849	-	100	89.344	ENSCSEG00000004701	-	100	89.344	Cynoglossus_semilaevis
ENSMZEG00005000849	-	81	62.632	ENSCSEG00000020943	rbm38	63	64.062	Cynoglossus_semilaevis
ENSMZEG00005000849	-	100	88.115	ENSCVAG00000005472	-	100	88.115	Cyprinodon_variegatus
ENSMZEG00005000849	-	99	59.438	ENSCVAG00000015952	rbm38	98	61.811	Cyprinodon_variegatus
ENSMZEG00005000849	-	99	71.967	ENSDARG00000058818	rbm38	100	71.967	Danio_rerio
ENSMZEG00005000849	-	92	70.370	ENSDNOG00000032004	RBM38	98	69.302	Dasypus_novemcinctus
ENSMZEG00005000849	-	92	70.183	ENSECAG00000007700	RBM38	89	69.585	Equus_caballus
ENSMZEG00005000849	-	91	69.406	ENSEEUG00000013489	RBM38	89	70.183	Erinaceus_europaeus
ENSMZEG00005000849	-	85	70.098	ENSELUG00000000585	-	98	63.319	Esox_lucius
ENSMZEG00005000849	-	100	81.224	ENSELUG00000005849	-	100	81.224	Esox_lucius
ENSMZEG00005000849	-	92	70.183	ENSFCAG00000042916	RBM38	84	87.500	Felis_catus
ENSMZEG00005000849	-	77	74.033	ENSFALG00000010805	RBM38	92	72.626	Ficedula_albicollis
ENSMZEG00005000849	-	100	86.580	ENSFHEG00000006160	-	100	86.580	Fundulus_heteroclitus
ENSMZEG00005000849	-	100	61.417	ENSFHEG00000017748	rbm38	98	61.417	Fundulus_heteroclitus
ENSMZEG00005000849	-	79	86.957	ENSGMOG00000016655	-	98	85.326	Gadus_morhua
ENSMZEG00005000849	-	94	68.750	ENSGALG00000026081	RBM38	100	69.369	Gallus_gallus
ENSMZEG00005000849	-	94	88.940	ENSGACG00000009873	-	100	88.940	Gasterosteus_aculeatus
ENSMZEG00005000849	-	94	69.863	ENSGACG00000015224	rbm38	100	69.863	Gasterosteus_aculeatus
ENSMZEG00005000849	-	94	72.197	ENSGAGG00000001187	RBM38	100	70.270	Gopherus_agassizii
ENSMZEG00005000849	-	100	100.000	ENSHBUG00000011778	-	100	100.000	Haplochromis_burtoni
ENSMZEG00005000849	-	100	64.143	ENSHBUG00000012058	rbm38	98	64.143	Haplochromis_burtoni
ENSMZEG00005000849	-	92	67.431	ENSHGLG00000015077	RBM38	89	69.725	Heterocephalus_glaber_female
ENSMZEG00005000849	-	96	52.444	ENSHCOG00000019040	rbm38	90	52.444	Hippocampus_comes
ENSMZEG00005000849	-	86	91.960	ENSHCOG00000005622	-	59	91.262	Hippocampus_comes
ENSMZEG00005000849	-	100	72.245	ENSIPUG00000019349	-	100	72.245	Ictalurus_punctatus
ENSMZEG00005000849	-	92	59.657	ENSKMAG00000012402	rbm38	98	59.657	Kryptolebias_marmoratus
ENSMZEG00005000849	-	100	93.074	ENSLBEG00000016163	RBM38	100	93.074	Labrus_bergylta
ENSMZEG00005000849	-	100	63.889	ENSLBEG00000018878	rbm38	98	63.889	Labrus_bergylta
ENSMZEG00005000849	-	100	77.021	ENSLOCG00000003456	rbm38	100	77.021	Lepisosteus_oculatus
ENSMZEG00005000849	-	92	70.776	ENSMFAG00000043808	RBM38	78	94.681	Macaca_fascicularis
ENSMZEG00005000849	-	92	70.776	ENSMMUG00000031391	RBM38	78	94.681	Macaca_mulatta
ENSMZEG00005000849	-	92	70.776	ENSMNEG00000034683	RBM38	78	94.681	Macaca_nemestrina
ENSMZEG00005000849	-	100	90.574	ENSMAMG00000020499	RBM38	100	90.574	Mastacembelus_armatus
ENSMZEG00005000849	-	100	66.135	ENSMAMG00000024135	rbm38	98	64.940	Mastacembelus_armatus
ENSMZEG00005000849	-	100	64.143	ENSMZEG00005026036	rbm38	98	64.143	Maylandia_zebra
ENSMZEG00005000849	-	92	71.233	ENSMAUG00000021211	Rbm38	89	69.725	Mesocricetus_auratus
ENSMZEG00005000849	-	92	71.364	ENSMICG00000038011	RBM38	98	70.776	Microcebus_murinus
ENSMZEG00005000849	-	97	68.398	ENSMOCG00000008715	Rbm38	94	66.957	Microtus_ochrogaster
ENSMZEG00005000849	-	100	92.213	ENSMMOG00000020051	-	100	92.213	Mola_mola
ENSMZEG00005000849	-	94	69.196	ENSMODG00000016458	RBM38	92	69.369	Monodelphis_domestica
ENSMZEG00005000849	-	100	58.475	ENSMALG00000022327	rbm38	98	59.244	Monopterus_albus
ENSMZEG00005000849	-	82	96.296	ENSMALG00000004680	RBM38	72	96.296	Monopterus_albus
ENSMZEG00005000849	-	97	64.783	MGP_CAROLIEiJ_G0024745	Rbm38	94	67.391	Mus_caroli
ENSMZEG00005000849	-	97	64.783	ENSMUSG00000027510	Rbm38	94	67.391	Mus_musculus
ENSMZEG00005000849	-	97	64.783	MGP_PahariEiJ_G0026186	Rbm38	94	67.391	Mus_pahari
ENSMZEG00005000849	-	97	64.783	MGP_SPRETEiJ_G0025665	Rbm38	94	67.391	Mus_spretus
ENSMZEG00005000849	-	76	76.374	ENSMPUG00000006518	RBM38	92	75.000	Mustela_putorius_furo
ENSMZEG00005000849	-	92	70.642	ENSMLUG00000011140	RBM38	98	69.585	Myotis_lucifugus
ENSMZEG00005000849	-	100	99.590	ENSNBRG00000022545	-	100	99.590	Neolamprologus_brichardi
ENSMZEG00005000849	-	100	64.542	ENSNBRG00000022685	rbm38	98	64.542	Neolamprologus_brichardi
ENSMZEG00005000849	-	51	78.632	ENSMEUG00000005475	-	86	78.632	Notamacropus_eugenii
ENSMZEG00005000849	-	92	70.320	ENSODEG00000007980	RBM38	89	70.183	Octodon_degus
ENSMZEG00005000849	-	99	64.400	ENSONIG00000017073	rbm38	100	64.400	Oreochromis_niloticus
ENSMZEG00005000849	-	99	99.588	ENSONIG00000020324	-	100	99.588	Oreochromis_niloticus
ENSMZEG00005000849	-	94	69.820	ENSOANG00000009259	RBM38	83	68.778	Ornithorhynchus_anatinus
ENSMZEG00005000849	-	100	57.937	ENSORLG00000012154	rbm38	98	59.216	Oryzias_latipes
ENSMZEG00005000849	-	100	89.024	ENSORLG00000027180	-	100	90.244	Oryzias_latipes
ENSMZEG00005000849	-	100	59.216	ENSORLG00020017871	rbm38	98	59.216	Oryzias_latipes_hni
ENSMZEG00005000849	-	100	89.024	ENSORLG00020020751	-	100	90.244	Oryzias_latipes_hni
ENSMZEG00005000849	-	100	90.204	ENSORLG00015017040	-	100	91.020	Oryzias_latipes_hsok
ENSMZEG00005000849	-	100	59.216	ENSORLG00015012606	rbm38	98	59.216	Oryzias_latipes_hsok
ENSMZEG00005000849	-	100	90.574	ENSOMEG00000023912	-	100	90.574	Oryzias_melastigma
ENSMZEG00005000849	-	100	59.921	ENSOMEG00000006805	rbm38	98	60.870	Oryzias_melastigma
ENSMZEG00005000849	-	92	71.233	ENSOGAG00000029136	RBM38	88	71.101	Otolemur_garnettii
ENSMZEG00005000849	-	92	70.183	ENSPPRG00000009507	RBM38	84	87.500	Panthera_pardus
ENSMZEG00005000849	-	78	75.401	ENSPTRG00000013661	RBM38	78	94.681	Pan_troglodytes
ENSMZEG00005000849	-	55	85.714	ENSPTRG00000045845	-	66	88.333	Pan_troglodytes
ENSMZEG00005000849	-	92	70.776	ENSPANG00000020919	-	78	94.681	Papio_anubis
ENSMZEG00005000849	-	92	57.339	ENSPANG00000033127	-	91	55.505	Papio_anubis
ENSMZEG00005000849	-	100	75.105	ENSPKIG00000018122	-	95	91.892	Paramormyrops_kingsleyae
ENSMZEG00005000849	-	100	70.082	ENSPKIG00000025417	rbm38	100	71.200	Paramormyrops_kingsleyae
ENSMZEG00005000849	-	96	70.925	ENSPSIG00000011649	RBM38	94	69.027	Pelodiscus_sinensis
ENSMZEG00005000849	-	99	62.000	ENSPMGG00000011343	rbm38	98	62.000	Periophthalmus_magnuspinnatus
ENSMZEG00005000849	-	100	83.468	ENSPMGG00000017094	-	100	85.081	Periophthalmus_magnuspinnatus
ENSMZEG00005000849	-	94	70.404	ENSPCIG00000013648	RBM38	92	68.468	Phascolarctos_cinereus
ENSMZEG00005000849	-	100	57.480	ENSPFOG00000011658	rbm38	98	60.700	Poecilia_formosa
ENSMZEG00005000849	-	100	58.039	ENSPLAG00000005218	rbm38	98	60.700	Poecilia_latipinna
ENSMZEG00005000849	-	100	87.805	ENSPLAG00000002500	-	100	87.805	Poecilia_latipinna
ENSMZEG00005000849	-	100	57.480	ENSPMEG00000015770	rbm38	98	59.690	Poecilia_mexicana
ENSMZEG00005000849	-	100	57.480	ENSPREG00000007398	rbm38	98	60.700	Poecilia_reticulata
ENSMZEG00005000849	-	92	70.909	ENSPCOG00000026201	RBM38	77	94.681	Propithecus_coquereli
ENSMZEG00005000849	-	70	85.484	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSMZEG00005000849	-	100	63.745	ENSPNYG00000021373	rbm38	98	63.745	Pundamilia_nyererei
ENSMZEG00005000849	-	100	100.000	ENSPNYG00000019727	-	100	100.000	Pundamilia_nyererei
ENSMZEG00005000849	-	96	71.739	ENSPNAG00000010596	rbm38	97	71.739	Pygocentrus_nattereri
ENSMZEG00005000849	-	100	78.151	ENSPNAG00000015123	-	98	82.963	Pygocentrus_nattereri
ENSMZEG00005000849	-	97	67.100	ENSRNOG00000006420	Rbm38	94	67.532	Rattus_norvegicus
ENSMZEG00005000849	-	94	56.561	ENSRROG00000036388	-	92	54.867	Rhinopithecus_roxellana
ENSMZEG00005000849	-	92	71.689	ENSSBOG00000031053	RBM38	93	90.099	Saimiri_boliviensis_boliviensis
ENSMZEG00005000849	-	100	72.314	ENSSFOG00015004453	rbm38	100	75.104	Scleropages_formosus
ENSMZEG00005000849	-	100	65.737	ENSSDUG00000022611	rbm38	98	65.737	Seriola_dumerili
ENSMZEG00005000849	-	100	91.803	ENSSDUG00000021082	RBM38	100	91.803	Seriola_dumerili
ENSMZEG00005000849	-	100	65.737	ENSSLDG00000010845	rbm38	98	65.737	Seriola_lalandi_dorsalis
ENSMZEG00005000849	-	100	92.623	ENSSLDG00000011778	RBM38	100	92.623	Seriola_lalandi_dorsalis
ENSMZEG00005000849	-	100	63.922	ENSSPAG00000011113	rbm38	98	63.922	Stegastes_partitus
ENSMZEG00005000849	-	100	91.803	ENSSPAG00000020989	RBM38	100	91.803	Stegastes_partitus
ENSMZEG00005000849	-	92	70.183	ENSSSCG00000007504	RBM38	89	70.046	Sus_scrofa
ENSMZEG00005000849	-	100	88.163	ENSTRUG00000019869	-	100	88.163	Takifugu_rubripes
ENSMZEG00005000849	-	96	64.135	ENSTRUG00000024954	rbm38	94	65.833	Takifugu_rubripes
ENSMZEG00005000849	-	94	90.498	ENSTNIG00000007093	-	100	90.498	Tetraodon_nigroviridis
ENSMZEG00005000849	-	92	71.689	ENSUAMG00000019780	RBM38	89	71.689	Ursus_americanus
ENSMZEG00005000849	-	92	72.018	ENSVVUG00000017246	RBM38	89	72.018	Vulpes_vulpes
ENSMZEG00005000849	-	94	67.556	ENSXETG00000011268	rbm38	99	68.000	Xenopus_tropicalis
ENSMZEG00005000849	-	75	77.528	ENSXCOG00000017324	-	68	83.974	Xiphophorus_couchianus
ENSMZEG00005000849	-	100	58.964	ENSXMAG00000023662	rbm38	98	62.205	Xiphophorus_maculatus