EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005001168 (Gene tree)
Gene ID: 101487974
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 18120 bases
Position: chrLG22:33589276-33607395
Accession: 101487974
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005001495	CPSF_A	PF03178.15	1e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005001585	-	4152	XM_004563704	ENSMZEP00005001495	1383 (aa)	XP_004563761	-

Gene Model

Click here to download ENSMZEG00005001168's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005001168's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005001168	cpsf1	100	77.178	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSMZEG00005001168	cpsf1	100	88.179	ENSAPOG00000019621	cpsf1	100	88.587	Acanthochromis_polyacanthus
ENSMZEG00005001168	cpsf1	97	77.201	ENSAMEG00000005557	CPSF1	99	77.201	Ailuropoda_melanoleuca
ENSMZEG00005001168	cpsf1	100	90.334	ENSACIG00000006112	cpsf1	100	90.473	Amphilophus_citrinellus
ENSMZEG00005001168	cpsf1	100	89.565	ENSAOCG00000007120	cpsf1	100	89.496	Amphiprion_ocellaris
ENSMZEG00005001168	cpsf1	100	90.552	ENSAPEG00000005755	cpsf1	100	90.552	Amphiprion_percula
ENSMZEG00005001168	cpsf1	100	87.585	ENSATEG00000011097	cpsf1	100	87.653	Anabas_testudineus
ENSMZEG00005001168	cpsf1	92	72.626	ENSACAG00000009655	CPSF1	100	72.383	Anolis_carolinensis
ENSMZEG00005001168	cpsf1	100	77.370	ENSANAG00000036514	CPSF1	100	77.647	Aotus_nancymaae
ENSMZEG00005001168	cpsf1	100	99.928	ENSACLG00000012231	cpsf1	100	99.928	Astatotilapia_calliptera
ENSMZEG00005001168	cpsf1	100	78.422	ENSAMXG00000008485	cpsf1	100	78.422	Astyanax_mexicanus
ENSMZEG00005001168	cpsf1	100	76.291	ENSBTAG00000008355	CPSF1	100	77.498	Bos_taurus
ENSMZEG00005001168	cpsf1	100	32.159	WBGene00022301	cpsf-1	99	41.076	Caenorhabditis_elegans
ENSMZEG00005001168	cpsf1	100	77.785	ENSCJAG00000021421	CPSF1	100	77.647	Callithrix_jacchus
ENSMZEG00005001168	cpsf1	97	78.412	ENSCAFG00000001600	CPSF1	100	77.748	Canis_familiaris
ENSMZEG00005001168	cpsf1	100	76.987	ENSCAFG00020020821	CPSF1	100	77.194	Canis_lupus_dingo
ENSMZEG00005001168	cpsf1	100	74.427	ENSCHIG00000015833	CPSF1	100	74.079	Capra_hircus
ENSMZEG00005001168	cpsf1	100	77.993	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSMZEG00005001168	cpsf1	97	78.154	ENSCAPG00000014921	CPSF1	98	78.010	Cavia_aperea
ENSMZEG00005001168	cpsf1	100	76.609	ENSCPOG00000011448	CPSF1	100	76.471	Cavia_porcellus
ENSMZEG00005001168	cpsf1	100	77.785	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSMZEG00005001168	cpsf1	100	77.093	ENSCATG00000037234	CPSF1	100	79.167	Cercocebus_atys
ENSMZEG00005001168	cpsf1	100	78.047	ENSCLAG00000012166	CPSF1	100	77.909	Chinchilla_lanigera
ENSMZEG00005001168	cpsf1	100	77.509	ENSCSAG00000008502	CPSF1	100	77.370	Chlorocebus_sabaeus
ENSMZEG00005001168	cpsf1	99	78.896	ENSCPBG00000018910	CPSF1	96	79.175	Chrysemys_picta_bellii
ENSMZEG00005001168	cpsf1	96	47.716	ENSCING00000000514	-	100	47.464	Ciona_intestinalis
ENSMZEG00005001168	cpsf1	99	47.956	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSMZEG00005001168	cpsf1	97	75.681	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSMZEG00005001168	cpsf1	100	77.632	ENSCGRG00001016344	Cpsf1	100	77.285	Cricetulus_griseus_chok1gshd
ENSMZEG00005001168	cpsf1	100	75.970	ENSCGRG00000003118	Cpsf1	100	75.623	Cricetulus_griseus_crigri
ENSMZEG00005001168	cpsf1	100	86.625	ENSCSEG00000013464	cpsf1	100	86.415	Cynoglossus_semilaevis
ENSMZEG00005001168	cpsf1	86	84.397	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSMZEG00005001168	cpsf1	100	84.425	ENSDARG00000034178	cpsf1	100	84.425	Danio_rerio
ENSMZEG00005001168	cpsf1	55	76.573	ENSDNOG00000043654	CPSF1	94	75.434	Dasypus_novemcinctus
ENSMZEG00005001168	cpsf1	97	78.443	ENSDORG00000006278	Cpsf1	99	78.298	Dipodomys_ordii
ENSMZEG00005001168	cpsf1	100	43.185	FBgn0024698	Cpsf160	100	43.011	Drosophila_melanogaster
ENSMZEG00005001168	cpsf1	79	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSMZEG00005001168	cpsf1	100	77.540	ENSEASG00005010774	CPSF1	100	77.609	Equus_asinus_asinus
ENSMZEG00005001168	cpsf1	100	77.471	ENSECAG00000022209	CPSF1	100	77.540	Equus_caballus
ENSMZEG00005001168	cpsf1	100	77.693	ENSEEUG00000000471	CPSF1	100	77.279	Erinaceus_europaeus
ENSMZEG00005001168	cpsf1	100	83.840	ENSELUG00000012271	cpsf1	100	84.047	Esox_lucius
ENSMZEG00005001168	cpsf1	100	78.101	ENSFDAG00000016060	CPSF1	100	77.963	Fukomys_damarensis
ENSMZEG00005001168	cpsf1	100	86.013	ENSFHEG00000016801	cpsf1	100	85.933	Fundulus_heteroclitus
ENSMZEG00005001168	cpsf1	100	84.557	ENSGMOG00000000796	cpsf1	100	84.557	Gadus_morhua
ENSMZEG00005001168	cpsf1	95	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSMZEG00005001168	cpsf1	100	87.026	ENSGACG00000008703	cpsf1	100	87.095	Gasterosteus_aculeatus
ENSMZEG00005001168	cpsf1	100	76.125	ENSGAGG00000004276	CPSF1	98	80.067	Gopherus_agassizii
ENSMZEG00005001168	cpsf1	100	77.216	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSMZEG00005001168	cpsf1	100	95.924	ENSHBUG00000018900	cpsf1	100	95.924	Haplochromis_burtoni
ENSMZEG00005001168	cpsf1	100	77.978	ENSHGLG00000016139	CPSF1	100	77.839	Heterocephalus_glaber_female
ENSMZEG00005001168	cpsf1	100	77.909	ENSHGLG00100009750	CPSF1	100	77.770	Heterocephalus_glaber_male
ENSMZEG00005001168	cpsf1	100	84.768	ENSHCOG00000018509	cpsf1	100	84.973	Hippocampus_comes
ENSMZEG00005001168	cpsf1	100	80.632	ENSIPUG00000011259	cpsf1	100	80.632	Ictalurus_punctatus
ENSMZEG00005001168	cpsf1	97	78.089	ENSSTOG00000009957	CPSF1	98	78.233	Ictidomys_tridecemlineatus
ENSMZEG00005001168	cpsf1	100	78.110	ENSJJAG00000023002	Cpsf1	100	77.971	Jaculus_jaculus
ENSMZEG00005001168	cpsf1	91	93.103	ENSKMAG00000001940	cpsf1	99	93.103	Kryptolebias_marmoratus
ENSMZEG00005001168	cpsf1	100	86.240	ENSLBEG00000003601	cpsf1	100	86.512	Labrus_bergylta
ENSMZEG00005001168	cpsf1	92	72.584	ENSLACG00000000233	CPSF1	100	65.608	Latimeria_chalumnae
ENSMZEG00005001168	cpsf1	100	80.883	ENSLOCG00000008484	cpsf1	100	81.366	Lepisosteus_oculatus
ENSMZEG00005001168	cpsf1	97	78.339	ENSLAFG00000022601	CPSF1	99	78.339	Loxodonta_africana
ENSMZEG00005001168	cpsf1	100	77.093	ENSMFAG00000037013	CPSF1	100	79.167	Macaca_fascicularis
ENSMZEG00005001168	cpsf1	100	77.358	ENSMMUG00000007380	CPSF1	100	79.167	Macaca_mulatta
ENSMZEG00005001168	cpsf1	97	78.314	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSMZEG00005001168	cpsf1	100	77.163	ENSMLEG00000043010	CPSF1	100	79.167	Mandrillus_leucophaeus
ENSMZEG00005001168	cpsf1	100	88.315	ENSMAMG00000003803	cpsf1	100	88.451	Mastacembelus_armatus
ENSMZEG00005001168	cpsf1	100	77.632	ENSMAUG00000003601	Cpsf1	100	77.424	Mesocricetus_auratus
ENSMZEG00005001168	cpsf1	100	77.562	ENSMICG00000015767	CPSF1	100	77.355	Microcebus_murinus
ENSMZEG00005001168	cpsf1	100	77.424	ENSMOCG00000022758	Cpsf1	100	77.285	Microtus_ochrogaster
ENSMZEG00005001168	cpsf1	100	89.735	ENSMMOG00000021245	cpsf1	100	89.525	Mola_mola
ENSMZEG00005001168	cpsf1	100	77.548	ENSMODG00000010755	CPSF1	100	77.617	Monodelphis_domestica
ENSMZEG00005001168	cpsf1	100	87.891	ENSMALG00000020545	cpsf1	100	87.687	Monopterus_albus
ENSMZEG00005001168	cpsf1	100	77.909	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.770	Mus_caroli
ENSMZEG00005001168	cpsf1	100	77.909	ENSMUSG00000034022	Cpsf1	100	77.770	Mus_musculus
ENSMZEG00005001168	cpsf1	100	77.978	MGP_PahariEiJ_G0019946	Cpsf1	100	77.839	Mus_pahari
ENSMZEG00005001168	cpsf1	100	77.978	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.839	Mus_spretus
ENSMZEG00005001168	cpsf1	94	78.164	ENSMPUG00000006419	CPSF1	93	78.460	Mustela_putorius_furo
ENSMZEG00005001168	cpsf1	100	77.632	ENSNGAG00000022460	Cpsf1	100	77.493	Nannospalax_galili
ENSMZEG00005001168	cpsf1	100	89.645	ENSNBRG00000000813	cpsf1	100	89.800	Neolamprologus_brichardi
ENSMZEG00005001168	cpsf1	85	69.369	ENSNLEG00000010633	-	100	79.167	Nomascus_leucogenys
ENSMZEG00005001168	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSMZEG00005001168	cpsf1	61	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSMZEG00005001168	cpsf1	100	78.116	ENSODEG00000013995	CPSF1	100	77.701	Octodon_degus
ENSMZEG00005001168	cpsf1	100	94.175	ENSONIG00000007676	cpsf1	100	94.175	Oreochromis_niloticus
ENSMZEG00005001168	cpsf1	57	77.143	ENSOANG00000010716	CPSF1	86	77.143	Ornithorhynchus_anatinus
ENSMZEG00005001168	cpsf1	100	85.919	ENSORLG00000013544	cpsf1	100	85.919	Oryzias_latipes
ENSMZEG00005001168	cpsf1	100	85.919	ENSORLG00020021693	cpsf1	100	85.919	Oryzias_latipes_hni
ENSMZEG00005001168	cpsf1	100	85.988	ENSORLG00015009979	cpsf1	100	85.988	Oryzias_latipes_hsok
ENSMZEG00005001168	cpsf1	100	86.242	ENSOMEG00000011849	cpsf1	100	86.379	Oryzias_melastigma
ENSMZEG00005001168	cpsf1	100	77.785	ENSOGAG00000000315	CPSF1	100	77.647	Otolemur_garnettii
ENSMZEG00005001168	cpsf1	100	77.232	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSMZEG00005001168	cpsf1	100	75.918	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSMZEG00005001168	cpsf1	100	77.232	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSMZEG00005001168	cpsf1	97	78.314	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSMZEG00005001168	cpsf1	100	84.743	ENSPKIG00000002582	cpsf1	100	85.064	Paramormyrops_kingsleyae
ENSMZEG00005001168	cpsf1	100	77.686	ENSPCIG00000009035	CPSF1	100	77.755	Phascolarctos_cinereus
ENSMZEG00005001168	cpsf1	100	84.966	ENSPFOG00000012870	cpsf1	100	84.898	Poecilia_formosa
ENSMZEG00005001168	cpsf1	100	84.772	ENSPREG00000016307	cpsf1	100	84.844	Poecilia_reticulata
ENSMZEG00005001168	cpsf1	100	70.609	ENSPPYG00000018973	CPSF1	100	70.332	Pongo_abelii
ENSMZEG00005001168	cpsf1	91	84.659	ENSPCAG00000011541	CPSF1	93	84.659	Procavia_capensis
ENSMZEG00005001168	cpsf1	100	74.238	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSMZEG00005001168	cpsf1	90	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSMZEG00005001168	cpsf1	100	94.591	ENSPNYG00000004906	cpsf1	100	94.591	Pundamilia_nyererei
ENSMZEG00005001168	cpsf1	100	81.588	ENSPNAG00000024395	cpsf1	100	81.588	Pygocentrus_nattereri
ENSMZEG00005001168	cpsf1	100	77.878	ENSRNOG00000030705	Cpsf1	100	77.739	Rattus_norvegicus
ENSMZEG00005001168	cpsf1	100	77.163	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSMZEG00005001168	cpsf1	100	77.232	ENSRROG00000044861	CPSF1	100	79.630	Rhinopithecus_roxellana
ENSMZEG00005001168	cpsf1	97	78.762	ENSSBOG00000027177	CPSF1	99	78.618	Saimiri_boliviensis_boliviensis
ENSMZEG00005001168	cpsf1	100	77.548	ENSSHAG00000006500	CPSF1	100	77.755	Sarcophilus_harrisii
ENSMZEG00005001168	cpsf1	100	82.113	ENSSFOG00015004606	cpsf1	100	85.579	Scleropages_formosus
ENSMZEG00005001168	cpsf1	100	87.143	ENSSMAG00000020547	cpsf1	100	87.143	Scophthalmus_maximus
ENSMZEG00005001168	cpsf1	100	91.907	ENSSDUG00000001100	cpsf1	100	91.766	Seriola_dumerili
ENSMZEG00005001168	cpsf1	100	91.766	ENSSLDG00000003619	cpsf1	100	92.048	Seriola_lalandi_dorsalis
ENSMZEG00005001168	cpsf1	89	74.919	ENSSARG00000003643	CPSF1	91	74.758	Sorex_araneus
ENSMZEG00005001168	cpsf1	97	80.634	ENSSPUG00000014396	CPSF1	99	80.418	Sphenodon_punctatus
ENSMZEG00005001168	cpsf1	100	88.919	ENSSPAG00000005349	cpsf1	100	88.919	Stegastes_partitus
ENSMZEG00005001168	cpsf1	100	76.401	ENSSSCG00000005906	CPSF1	100	76.471	Sus_scrofa
ENSMZEG00005001168	cpsf1	97	86.901	ENSTRUG00000013134	cpsf1	99	86.549	Takifugu_rubripes
ENSMZEG00005001168	cpsf1	100	86.667	ENSTNIG00000014027	cpsf1	100	86.667	Tetraodon_nigroviridis
ENSMZEG00005001168	cpsf1	76	75.972	ENSTBEG00000001756	CPSF1	91	75.618	Tupaia_belangeri
ENSMZEG00005001168	cpsf1	89	85.481	ENSTTRG00000001937	CPSF1	88	85.299	Tursiops_truncatus
ENSMZEG00005001168	cpsf1	97	78.773	ENSUAMG00000006476	CPSF1	97	78.773	Ursus_americanus
ENSMZEG00005001168	cpsf1	100	86.844	ENSXCOG00000003608	cpsf1	100	86.914	Xiphophorus_couchianus
ENSMZEG00005001168	cpsf1	100	86.192	ENSXMAG00000005798	cpsf1	100	86.053	Xiphophorus_maculatus