EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005001281 (Gene tree)
Gene ID: 101486024
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 4275 bases
Position: chrLG2:4912028-4916302
Accession: 101486024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005001556	Gar1	PF04410.14	2.2e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005001646	-	1818	XM_004553611	ENSMZEP00005001556	223 (aa)	XP_004553668	UPI00032A0FCD

Gene Model

Click here to download ENSMZEG00005001281's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005001281's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005001281	gar1	66	84.354	ENSACAG00000010031	GAR1	50	91.509	Anolis_carolinensis
ENSMZEG00005001281	gar1	100	100.000	ENSACLG00000010029	gar1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005001281	gar1	63	67.857	ENSCHIG00000011049	-	55	79.091	Capra_hircus
ENSMZEG00005001281	gar1	56	92.800	ENSCGRG00000010165	-	92	92.800	Cricetulus_griseus_crigri
ENSMZEG00005001281	gar1	50	90.991	ENSDORG00000000482	Gar1	51	90.909	Dipodomys_ordii
ENSMZEG00005001281	gar1	61	52.206	ENSFCAG00000025841	-	52	58.182	Felis_catus
ENSMZEG00005001281	gar1	64	87.413	ENSFHEG00000008068	gar1	51	96.364	Fundulus_heteroclitus
ENSMZEG00005001281	gar1	64	81.119	ENSGALG00000020164	GAR1	63	85.401	Gallus_gallus
ENSMZEG00005001281	gar1	74	80.000	ENSIPUG00000003194	gar1	52	95.455	Ictalurus_punctatus
ENSMZEG00005001281	gar1	50	96.396	ENSKMAG00000010402	gar1	52	97.273	Kryptolebias_marmoratus
ENSMZEG00005001281	gar1	50	90.179	ENSMICG00000003326	GAR1	51	90.909	Microcebus_murinus
ENSMZEG00005001281	gar1	51	86.842	ENSMODG00000005897	GAR1	71	76.471	Monodelphis_domestica
ENSMZEG00005001281	gar1	61	85.926	MGP_CAROLIEiJ_G0025627	Gar1	99	90.361	Mus_caroli
ENSMZEG00005001281	gar1	65	88.356	ENSORLG00000020583	gar1	50	97.273	Oryzias_latipes
ENSMZEG00005001281	gar1	65	88.356	ENSORLG00020008602	gar1	50	97.273	Oryzias_latipes_hni
ENSMZEG00005001281	gar1	65	88.356	ENSORLG00015017643	gar1	50	97.273	Oryzias_latipes_hsok
ENSMZEG00005001281	gar1	65	85.517	ENSPPAG00000014081	GAR1	66	86.713	Pan_paniscus
ENSMZEG00005001281	gar1	65	76.991	ENSPTRG00000049340	-	51	75.701	Pan_troglodytes
ENSMZEG00005001281	gar1	65	80.690	ENSPSIG00000002970	GAR1	50	90.909	Pelodiscus_sinensis
ENSMZEG00005001281	gar1	51	86.842	ENSPCIG00000018912	GAR1	62	76.190	Phascolarctos_cinereus
ENSMZEG00005001281	gar1	64	80.420	ENSPFOG00000024155	gar1	52	95.455	Poecilia_formosa
ENSMZEG00005001281	gar1	64	80.420	ENSPLAG00000015056	gar1	52	95.455	Poecilia_latipinna
ENSMZEG00005001281	gar1	64	81.119	ENSPMEG00000009320	gar1	53	96.364	Poecilia_mexicana
ENSMZEG00005001281	gar1	50	75.893	ENSRBIG00000042411	-	53	75.455	Rhinopithecus_bieti
ENSMZEG00005001281	gar1	50	75.893	ENSRROG00000044348	-	53	75.455	Rhinopithecus_roxellana
ENSMZEG00005001281	gar1	57	88.889	ENSSLDG00000023264	gar1	52	98.182	Seriola_lalandi_dorsalis
ENSMZEG00005001281	gar1	64	89.510	ENSVVUG00000017612	GAR1	67	88.356	Vulpes_vulpes