EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005001855 (Gene tree)
Gene ID: 101465742
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 8884 bases
Position: chrLG23:30608366-30617249
Accession: 101465742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005002329	RNA_ligase	PF09414.10	1.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005002435	-	5127	XM_004573277	ENSMZEP00005002329	910 (aa)	XP_004573334	UPI000D317EDA

Gene Model

Click here to download ENSMZEG00005001855's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005001855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005001855	lig4	99	66.007	ENSG00000174405	LIG4	99	66.548	Homo_sapiens
ENSMZEG00005001855	lig4	99	90.099	ENSAPOG00000000866	lig4	99	90.099	Acanthochromis_polyacanthus
ENSMZEG00005001855	lig4	99	64.372	ENSAMEG00000019685	LIG4	99	64.784	Ailuropoda_melanoleuca
ENSMZEG00005001855	lig4	100	93.077	ENSACIG00000018309	lig4	100	93.077	Amphilophus_citrinellus
ENSMZEG00005001855	lig4	99	90.209	ENSAOCG00000011768	lig4	99	90.209	Amphiprion_ocellaris
ENSMZEG00005001855	lig4	99	90.209	ENSAPEG00000017815	lig4	100	90.110	Amphiprion_percula
ENSMZEG00005001855	lig4	99	88.106	ENSATEG00000005583	lig4	99	88.106	Anabas_testudineus
ENSMZEG00005001855	lig4	96	67.314	ENSAPLG00000001673	LIG4	99	67.314	Anas_platyrhynchos
ENSMZEG00005001855	lig4	99	67.660	ENSACAG00000014566	LIG4	99	67.660	Anolis_carolinensis
ENSMZEG00005001855	lig4	99	65.567	ENSANAG00000012446	LIG4	99	65.567	Aotus_nancymaae
ENSMZEG00005001855	lig4	100	99.780	ENSACLG00000027051	lig4	100	99.780	Astatotilapia_calliptera
ENSMZEG00005001855	lig4	99	80.769	ENSAMXG00000008192	lig4	94	80.769	Astyanax_mexicanus
ENSMZEG00005001855	lig4	99	65.385	ENSBTAG00000015868	LIG4	99	65.385	Bos_taurus
ENSMZEG00005001855	lig4	99	65.127	ENSCJAG00000014689	LIG4	99	65.127	Callithrix_jacchus
ENSMZEG00005001855	lig4	99	65.055	ENSCAFG00000006031	LIG4	99	65.055	Canis_familiaris
ENSMZEG00005001855	lig4	99	65.055	ENSCAFG00020021230	LIG4	99	65.055	Canis_lupus_dingo
ENSMZEG00005001855	lig4	99	65.275	ENSCHIG00000001019	LIG4	99	65.275	Capra_hircus
ENSMZEG00005001855	lig4	98	65.188	ENSCAPG00000006284	LIG4	99	65.188	Cavia_aperea
ENSMZEG00005001855	lig4	99	65.017	ENSCPOG00000014266	LIG4	99	65.017	Cavia_porcellus
ENSMZEG00005001855	lig4	99	65.787	ENSCCAG00000019971	LIG4	99	65.787	Cebus_capucinus
ENSMZEG00005001855	lig4	98	65.632	ENSCATG00000021075	LIG4	99	65.632	Cercocebus_atys
ENSMZEG00005001855	lig4	98	65.854	ENSCLAG00000003376	LIG4	99	65.854	Chinchilla_lanigera
ENSMZEG00005001855	lig4	98	65.632	ENSCSAG00000000211	LIG4	99	65.632	Chlorocebus_sabaeus
ENSMZEG00005001855	lig4	98	68.667	ENSCPBG00000023291	LIG4	99	68.127	Chrysemys_picta_bellii
ENSMZEG00005001855	lig4	69	47.642	ENSCING00000009536	-	97	47.642	Ciona_intestinalis
ENSMZEG00005001855	lig4	83	45.000	ENSCSAVG00000010336	-	98	45.000	Ciona_savignyi
ENSMZEG00005001855	lig4	98	65.521	ENSCANG00000005805	LIG4	99	65.521	Colobus_angolensis_palliatus
ENSMZEG00005001855	lig4	99	65.165	ENSCGRG00001012072	Lig4	99	64.841	Cricetulus_griseus_chok1gshd
ENSMZEG00005001855	lig4	99	65.165	ENSCGRG00000013417	Lig4	99	64.841	Cricetulus_griseus_crigri
ENSMZEG00005001855	lig4	97	85.006	ENSCSEG00000013905	lig4	96	85.006	Cynoglossus_semilaevis
ENSMZEG00005001855	lig4	100	87.377	ENSCVAG00000007896	lig4	100	87.377	Cyprinodon_variegatus
ENSMZEG00005001855	lig4	99	80.308	ENSDARG00000060620	lig4	99	80.308	Danio_rerio
ENSMZEG00005001855	lig4	99	65.495	ENSDNOG00000000513	LIG4	99	65.495	Dasypus_novemcinctus
ENSMZEG00005001855	lig4	98	65.743	ENSDORG00000027303	Lig4	99	65.743	Dipodomys_ordii
ENSMZEG00005001855	lig4	93	30.934	FBgn0030506	Lig4	93	30.934	Drosophila_melanogaster
ENSMZEG00005001855	lig4	98	63.263	ENSETEG00000015563	LIG4	99	63.485	Echinops_telfairi
ENSMZEG00005001855	lig4	99	44.456	ENSEBUG00000014243	lig4	99	44.038	Eptatretus_burgeri
ENSMZEG00005001855	lig4	99	65.055	ENSEASG00005022073	LIG4	99	65.055	Equus_asinus_asinus
ENSMZEG00005001855	lig4	99	65.275	ENSECAG00000003257	LIG4	99	65.165	Equus_caballus
ENSMZEG00005001855	lig4	98	83.315	ENSELUG00000006787	lig4	99	83.426	Esox_lucius
ENSMZEG00005001855	lig4	99	64.505	ENSFCAG00000031985	LIG4	99	64.505	Felis_catus
ENSMZEG00005001855	lig4	89	68.936	ENSFALG00000004214	LIG4	98	68.936	Ficedula_albicollis
ENSMZEG00005001855	lig4	99	64.246	ENSFDAG00000008973	LIG4	99	64.246	Fukomys_damarensis
ENSMZEG00005001855	lig4	99	88.242	ENSFHEG00000007398	lig4	90	88.242	Fundulus_heteroclitus
ENSMZEG00005001855	lig4	85	77.378	ENSGMOG00000012843	lig4	99	77.378	Gadus_morhua
ENSMZEG00005001855	lig4	99	66.081	ENSGALG00000016854	LIG4	99	66.081	Gallus_gallus
ENSMZEG00005001855	lig4	99	86.857	ENSGAFG00000019779	lig4	96	87.185	Gambusia_affinis
ENSMZEG00005001855	lig4	99	84.309	ENSGACG00000014135	lig4	99	84.309	Gasterosteus_aculeatus
ENSMZEG00005001855	lig4	99	65.787	ENSGGOG00000027771	LIG4	99	65.787	Gorilla_gorilla
ENSMZEG00005001855	lig4	100	99.560	ENSHBUG00000006245	lig4	100	99.560	Haplochromis_burtoni
ENSMZEG00005001855	lig4	99	64.648	ENSHGLG00000000718	LIG4	99	64.648	Heterocephalus_glaber_female
ENSMZEG00005001855	lig4	99	64.648	ENSHGLG00100003265	LIG4	99	64.648	Heterocephalus_glaber_male
ENSMZEG00005001855	lig4	99	81.229	ENSHCOG00000012010	lig4	99	81.229	Hippocampus_comes
ENSMZEG00005001855	lig4	100	78.242	ENSIPUG00000013748	lig4	100	78.242	Ictalurus_punctatus
ENSMZEG00005001855	lig4	99	65.237	ENSSTOG00000024303	LIG4	99	64.912	Ictidomys_tridecemlineatus
ENSMZEG00005001855	lig4	99	65.203	ENSJJAG00000006750	Lig4	99	64.770	Jaculus_jaculus
ENSMZEG00005001855	lig4	99	84.598	ENSKMAG00000001149	lig4	99	84.598	Kryptolebias_marmoratus
ENSMZEG00005001855	lig4	91	88.121	ENSLBEG00000014578	lig4	99	88.121	Labrus_bergylta
ENSMZEG00005001855	lig4	99	68.277	ENSLACG00000003282	LIG4	99	68.277	Latimeria_chalumnae
ENSMZEG00005001855	lig4	99	72.478	ENSLOCG00000008901	lig4	99	72.478	Lepisosteus_oculatus
ENSMZEG00005001855	lig4	99	64.325	ENSLAFG00000031152	LIG4	99	64.325	Loxodonta_africana
ENSMZEG00005001855	lig4	98	65.632	ENSMFAG00000037235	LIG4	99	65.632	Macaca_fascicularis
ENSMZEG00005001855	lig4	98	65.521	ENSMMUG00000008874	LIG4	99	65.521	Macaca_mulatta
ENSMZEG00005001855	lig4	98	65.632	ENSMNEG00000023575	LIG4	99	65.632	Macaca_nemestrina
ENSMZEG00005001855	lig4	98	65.521	ENSMLEG00000026720	LIG4	99	65.521	Mandrillus_leucophaeus
ENSMZEG00005001855	lig4	100	88.462	ENSMAMG00000008472	lig4	99	88.462	Mastacembelus_armatus
ENSMZEG00005001855	lig4	99	66.081	ENSMGAG00000015532	LIG4	99	66.081	Meleagris_gallopavo
ENSMZEG00005001855	lig4	99	63.916	ENSMOCG00000019000	Lig4	99	63.806	Microtus_ochrogaster
ENSMZEG00005001855	lig4	100	86.813	ENSMMOG00000004390	lig4	100	86.813	Mola_mola
ENSMZEG00005001855	lig4	99	66.813	ENSMODG00000025064	LIG4	99	66.813	Monodelphis_domestica
ENSMZEG00005001855	lig4	100	87.143	ENSMALG00000008555	lig4	100	87.143	Monopterus_albus
ENSMZEG00005001855	lig4	99	65.127	MGP_CAROLIEiJ_G0030809	Lig4	99	64.912	Mus_caroli
ENSMZEG00005001855	lig4	99	64.686	ENSMUSG00000049717	Lig4	99	64.474	Mus_musculus
ENSMZEG00005001855	lig4	99	64.686	MGP_PahariEiJ_G0021270	Lig4	99	64.686	Mus_pahari
ENSMZEG00005001855	lig4	99	64.906	MGP_SPRETEiJ_G0031917	Lig4	99	64.693	Mus_spretus
ENSMZEG00005001855	lig4	99	65.055	ENSMPUG00000018675	LIG4	99	65.055	Mustela_putorius_furo
ENSMZEG00005001855	lig4	99	65.275	ENSMLUG00000001267	LIG4	99	65.275	Myotis_lucifugus
ENSMZEG00005001855	lig4	99	65.347	ENSNGAG00000013258	Lig4	99	65.237	Nannospalax_galili
ENSMZEG00005001855	lig4	100	98.791	ENSNBRG00000021252	lig4	100	98.791	Neolamprologus_brichardi
ENSMZEG00005001855	lig4	99	65.457	ENSNLEG00000007888	LIG4	99	65.457	Nomascus_leucogenys
ENSMZEG00005001855	lig4	98	64.745	ENSOPRG00000005765	LIG4	99	64.634	Ochotona_princeps
ENSMZEG00005001855	lig4	98	64.634	ENSODEG00000019683	LIG4	99	64.634	Octodon_degus
ENSMZEG00005001855	lig4	100	97.363	ENSONIG00000011969	lig4	99	97.363	Oreochromis_niloticus
ENSMZEG00005001855	lig4	99	65.017	ENSOCUG00000015734	LIG4	99	64.906	Oryctolagus_cuniculus
ENSMZEG00005001855	lig4	99	85.181	ENSORLG00000004041	lig4	99	85.181	Oryzias_latipes
ENSMZEG00005001855	lig4	99	85.071	ENSORLG00020019607	lig4	99	85.071	Oryzias_latipes_hni
ENSMZEG00005001855	lig4	99	85.181	ENSORLG00015017754	lig4	99	85.181	Oryzias_latipes_hsok
ENSMZEG00005001855	lig4	75	89.374	ENSOMEG00000003459	lig4	99	89.374	Oryzias_melastigma
ENSMZEG00005001855	lig4	99	65.934	ENSOGAG00000032120	LIG4	99	65.934	Otolemur_garnettii
ENSMZEG00005001855	lig4	81	69.355	ENSOARG00000005590	LIG4	98	69.355	Ovis_aries
ENSMZEG00005001855	lig4	99	65.787	ENSPPAG00000032998	LIG4	99	65.787	Pan_paniscus
ENSMZEG00005001855	lig4	99	64.945	ENSPPRG00000017804	LIG4	99	64.945	Panthera_pardus
ENSMZEG00005001855	lig4	99	64.835	ENSPTIG00000010051	LIG4	99	64.835	Panthera_tigris_altaica
ENSMZEG00005001855	lig4	99	65.897	ENSPTRG00000006025	LIG4	99	65.897	Pan_troglodytes
ENSMZEG00005001855	lig4	98	65.743	ENSPANG00000007562	LIG4	99	65.743	Papio_anubis
ENSMZEG00005001855	lig4	100	77.936	ENSPKIG00000011645	lig4	99	77.936	Paramormyrops_kingsleyae
ENSMZEG00005001855	lig4	99	68.057	ENSPSIG00000001504	LIG4	99	68.057	Pelodiscus_sinensis
ENSMZEG00005001855	lig4	98	81.075	ENSPMGG00000013486	lig4	99	80.308	Periophthalmus_magnuspinnatus
ENSMZEG00005001855	lig4	99	64.505	ENSPEMG00000000076	Lig4	99	64.505	Peromyscus_maniculatus_bairdii
ENSMZEG00005001855	lig4	99	65.714	ENSPCIG00000021882	LIG4	99	65.714	Phascolarctos_cinereus
ENSMZEG00005001855	lig4	100	87.500	ENSPFOG00000000797	lig4	99	87.925	Poecilia_formosa
ENSMZEG00005001855	lig4	100	87.390	ENSPLAG00000001196	lig4	99	87.816	Poecilia_latipinna
ENSMZEG00005001855	lig4	100	87.500	ENSPMEG00000021353	lig4	99	87.925	Poecilia_mexicana
ENSMZEG00005001855	lig4	100	86.952	ENSPREG00000007323	lig4	99	87.377	Poecilia_reticulata
ENSMZEG00005001855	lig4	99	65.237	ENSPPYG00000005540	LIG4	99	65.237	Pongo_abelii
ENSMZEG00005001855	lig4	99	64.673	ENSPVAG00000016403	LIG4	99	64.349	Pteropus_vampyrus
ENSMZEG00005001855	lig4	100	99.451	ENSPNYG00000009660	lig4	100	99.451	Pundamilia_nyererei
ENSMZEG00005001855	lig4	99	81.036	ENSPNAG00000028069	LIG4	99	81.036	Pygocentrus_nattereri
ENSMZEG00005001855	lig4	99	81.036	ENSPNAG00000028056	lig4	99	81.036	Pygocentrus_nattereri
ENSMZEG00005001855	lig4	99	64.686	ENSRNOG00000014605	Lig4	99	64.576	Rattus_norvegicus
ENSMZEG00005001855	lig4	98	64.856	ENSRBIG00000039962	LIG4	99	64.856	Rhinopithecus_bieti
ENSMZEG00005001855	lig4	98	65.521	ENSRROG00000006040	LIG4	99	65.521	Rhinopithecus_roxellana
ENSMZEG00005001855	lig4	99	65.237	ENSSBOG00000019029	LIG4	99	65.237	Saimiri_boliviensis_boliviensis
ENSMZEG00005001855	lig4	99	63.626	ENSSHAG00000009525	LIG4	99	63.626	Sarcophilus_harrisii
ENSMZEG00005001855	lig4	100	79.011	ENSSFOG00015012835	lig4	100	79.011	Scleropages_formosus
ENSMZEG00005001855	lig4	100	83.297	ENSSMAG00000011267	lig4	100	83.297	Scophthalmus_maximus
ENSMZEG00005001855	lig4	100	87.527	ENSSDUG00000010343	lig4	99	87.842	Seriola_dumerili
ENSMZEG00005001855	lig4	100	86.543	ENSSLDG00000003239	lig4	99	86.637	Seriola_lalandi_dorsalis
ENSMZEG00005001855	lig4	98	63.646	ENSSARG00000006573	LIG4	99	63.646	Sorex_araneus
ENSMZEG00005001855	lig4	92	69.249	ENSSPUG00000002444	LIG4	99	69.249	Sphenodon_punctatus
ENSMZEG00005001855	lig4	99	90.209	ENSSPAG00000001609	lig4	99	90.209	Stegastes_partitus
ENSMZEG00005001855	lig4	99	65.160	ENSSSCG00000009540	LIG4	99	65.160	Sus_scrofa
ENSMZEG00005001855	lig4	99	66.741	ENSTGUG00000010795	LIG4	99	66.741	Taeniopygia_guttata
ENSMZEG00005001855	lig4	99	84.488	ENSTRUG00000009984	lig4	99	84.488	Takifugu_rubripes
ENSMZEG00005001855	lig4	99	82.288	ENSTNIG00000010348	lig4	99	82.508	Tetraodon_nigroviridis
ENSMZEG00005001855	lig4	99	65.677	ENSTBEG00000017741	LIG4	99	65.677	Tupaia_belangeri
ENSMZEG00005001855	lig4	99	65.017	ENSTTRG00000012660	LIG4	99	65.017	Tursiops_truncatus
ENSMZEG00005001855	lig4	99	64.452	ENSUAMG00000003773	LIG4	99	64.452	Ursus_americanus
ENSMZEG00005001855	lig4	99	67.179	ENSXETG00000002654	lig4	99	67.179	Xenopus_tropicalis
ENSMZEG00005001855	lig4	100	87.061	ENSXCOG00000017401	lig4	99	87.486	Xiphophorus_couchianus
ENSMZEG00005001855	lig4	100	87.281	ENSXMAG00000015142	lig4	99	87.706	Xiphophorus_maculatus