EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005002199 (Gene tree)
Gene ID: 101479223
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 12380 bases
Position: chrLG5:28176682-28189061
Accession: 101479223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005002801	zf-U1	PF06220.12	1.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005002917	-	1160	XM_004547519	ENSMZEP00005002801	149 (aa)	XP_004547576	UPI00022B42AB

Gene Model

Click here to download ENSMZEG00005002199's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005002199's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005002199	snrpc	100	97.987	ENSAPOG00000013907	snrpc	100	97.987	Acanthochromis_polyacanthus
ENSMZEG00005002199	snrpc	100	97.987	ENSAOCG00000021151	snrpc	100	97.987	Amphiprion_ocellaris
ENSMZEG00005002199	snrpc	100	97.987	ENSAPEG00000023221	snrpc	100	97.987	Amphiprion_percula
ENSMZEG00005002199	snrpc	100	97.987	ENSATEG00000025133	snrpc	100	97.987	Anabas_testudineus
ENSMZEG00005002199	snrpc	100	66.875	ENSANAG00000021026	-	59	66.667	Aotus_nancymaae
ENSMZEG00005002199	snrpc	100	100.000	ENSACLG00000000843	snrpc	100	100.000	Astatotilapia_calliptera
ENSMZEG00005002199	snrpc	100	97.315	ENSCVAG00000014297	snrpc	100	97.315	Cyprinodon_variegatus
ENSMZEG00005002199	snrpc	73	100.000	ENSFHEG00000016667	snrpc	97	100.000	Fundulus_heteroclitus
ENSMZEG00005002199	snrpc	99	95.238	ENSGMOG00000000090	snrpc	100	95.238	Gadus_morhua
ENSMZEG00005002199	snrpc	100	97.315	ENSGAFG00000016115	snrpc	100	97.315	Gambusia_affinis
ENSMZEG00005002199	snrpc	99	97.279	ENSGACG00000004899	snrpc	98	97.279	Gasterosteus_aculeatus
ENSMZEG00005002199	snrpc	100	100.000	ENSHBUG00000011637	snrpc	100	100.000	Haplochromis_burtoni
ENSMZEG00005002199	snrpc	100	87.248	ENSHCOG00000001596	snrpc	57	96.429	Hippocampus_comes
ENSMZEG00005002199	snrpc	100	97.987	ENSKMAG00000016356	snrpc	100	97.987	Kryptolebias_marmoratus
ENSMZEG00005002199	snrpc	100	97.987	ENSLBEG00000023881	snrpc	100	97.987	Labrus_bergylta
ENSMZEG00005002199	snrpc	100	97.315	ENSMAMG00000003857	snrpc	100	97.315	Mastacembelus_armatus
ENSMZEG00005002199	snrpc	98	97.260	ENSMMOG00000013149	snrpc	100	97.260	Mola_mola
ENSMZEG00005002199	snrpc	100	95.973	ENSMALG00000001197	snrpc	100	95.973	Monopterus_albus
ENSMZEG00005002199	snrpc	100	100.000	ENSONIG00000014757	snrpc	100	100.000	Oreochromis_niloticus
ENSMZEG00005002199	snrpc	89	74.830	ENSOANG00000003405	SNRPC	62	75.000	Ornithorhynchus_anatinus
ENSMZEG00005002199	snrpc	96	96.503	ENSORLG00000007308	snrpc	97	96.503	Oryzias_latipes
ENSMZEG00005002199	snrpc	96	95.833	ENSORLG00020012607	SNRPC	97	95.833	Oryzias_latipes_hni
ENSMZEG00005002199	snrpc	74	98.198	ENSOMEG00000012014	snrpc	69	98.198	Oryzias_melastigma
ENSMZEG00005002199	snrpc	98	95.205	ENSPMGG00000022162	snrpc	100	95.205	Periophthalmus_magnuspinnatus
ENSMZEG00005002199	snrpc	100	97.315	ENSPFOG00000015174	snrpc	100	97.315	Poecilia_formosa
ENSMZEG00005002199	snrpc	100	97.315	ENSPLAG00000012311	snrpc	100	97.315	Poecilia_latipinna
ENSMZEG00005002199	snrpc	100	97.315	ENSPMEG00000010274	snrpc	100	97.315	Poecilia_mexicana
ENSMZEG00005002199	snrpc	99	79.592	ENSPREG00000013017	snrpc	68	81.600	Poecilia_reticulata
ENSMZEG00005002199	snrpc	98	84.247	ENSPNYG00000004900	snrpc	100	84.247	Pundamilia_nyererei
ENSMZEG00005002199	snrpc	100	97.987	ENSSMAG00000008029	snrpc	100	97.987	Scophthalmus_maximus
ENSMZEG00005002199	snrpc	100	97.987	ENSSDUG00000018895	snrpc	81	97.987	Seriola_dumerili
ENSMZEG00005002199	snrpc	100	97.987	ENSSLDG00000005034	snrpc	100	97.987	Seriola_lalandi_dorsalis
ENSMZEG00005002199	snrpc	100	97.987	ENSSPAG00000000914	snrpc	100	97.987	Stegastes_partitus
ENSMZEG00005002199	snrpc	100	79.195	ENSTRUG00000021651	snrpc	57	98.810	Takifugu_rubripes
ENSMZEG00005002199	snrpc	100	97.315	ENSXMAG00000017935	snrpc	100	97.315	Xiphophorus_maculatus