EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005003157 (Gene tree)
Gene ID: 101479613
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 51499 bases
Position: chrLG23:30923835-30975333
Accession: 101479613
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005004096	R3H	PF01424.22	1.4e-12	1	1
ENSMZEP00005004132	R3H	PF01424.22	1.5e-12	1	1
ENSMZEP00005004069	R3H	PF01424.22	1.6e-12	1	1
ENSMZEP00005004170	R3H	PF01424.22	1.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005004342	-	3684	XM_012919459	ENSMZEP00005004170	1038 (aa)	XP_012774913	UPI000329B4ED
ENSMZET00005004266	-	3721	XM_012919461	ENSMZEP00005004096	1002 (aa)	XP_012774915	-
ENSMZET00005004303	-	3697	XM_012919462	ENSMZEP00005004132	994 (aa)	XP_012774916	-
ENSMZET00005004239	-	3829	XM_012919460	ENSMZEP00005004069	1038 (aa)	XP_012774914	UPI000329B4ED

Gene Model

Click here to download ENSMZEG00005003157's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005003157's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005003157	r3hdm1	95	57.108	ENSG00000048991	R3HDM1	99	63.492	Homo_sapiens
ENSMZEG00005003157	r3hdm1	100	90.038	ENSAPOG00000020850	r3hdm1	96	89.080	Acanthochromis_polyacanthus
ENSMZEG00005003157	r3hdm1	93	57.824	ENSAMEG00000014886	R3HDM1	89	48.934	Ailuropoda_melanoleuca
ENSMZEG00005003157	r3hdm1	100	88.825	ENSAOCG00000005192	r3hdm1	100	88.825	Amphiprion_ocellaris
ENSMZEG00005003157	r3hdm1	100	88.067	ENSAPEG00000016108	r3hdm1	100	88.067	Amphiprion_percula
ENSMZEG00005003157	r3hdm1	100	86.111	ENSATEG00000000232	r3hdm1	100	86.508	Anabas_testudineus
ENSMZEG00005003157	r3hdm1	99	47.288	ENSAPLG00000015231	R3HDM1	89	48.073	Anas_platyrhynchos
ENSMZEG00005003157	r3hdm1	99	48.656	ENSACAG00000001676	R3HDM1	89	48.796	Anolis_carolinensis
ENSMZEG00005003157	r3hdm1	95	57.353	ENSANAG00000035334	R3HDM1	87	62.400	Aotus_nancymaae
ENSMZEG00005003157	r3hdm1	100	96.378	ENSACLG00000027282	r3hdm1	100	96.378	Astatotilapia_calliptera
ENSMZEG00005003157	r3hdm1	75	36.130	ENSAMXG00000020587	arpp21	59	38.569	Astyanax_mexicanus
ENSMZEG00005003157	r3hdm1	84	71.203	ENSAMXG00000003536	r3hdm1	81	70.170	Astyanax_mexicanus
ENSMZEG00005003157	r3hdm1	92	64.407	ENSAMXG00000012861	R3HDM1	89	63.680	Astyanax_mexicanus
ENSMZEG00005003157	r3hdm1	93	56.813	ENSBTAG00000013302	R3HDM1	89	48.706	Bos_taurus
ENSMZEG00005003157	r3hdm1	95	57.353	ENSCJAG00000011718	R3HDM1	87	62.400	Callithrix_jacchus
ENSMZEG00005003157	r3hdm1	99	48.353	ENSCAFG00000005075	R3HDM1	89	48.934	Canis_familiaris
ENSMZEG00005003157	r3hdm1	99	48.353	ENSCAFG00020016119	R3HDM1	92	58.077	Canis_lupus_dingo
ENSMZEG00005003157	r3hdm1	93	57.663	ENSCHIG00000020851	R3HDM1	89	49.516	Capra_hircus
ENSMZEG00005003157	r3hdm1	99	47.588	ENSCPOG00000012784	R3HDM1	100	59.532	Cavia_porcellus
ENSMZEG00005003157	r3hdm1	86	68.590	ENSCCAG00000027199	R3HDM1	81	68.590	Cebus_capucinus
ENSMZEG00005003157	r3hdm1	97	58.397	ENSCATG00000023642	R3HDM1	87	62.400	Cercocebus_atys
ENSMZEG00005003157	r3hdm1	99	47.059	ENSCLAG00000007962	R3HDM1	100	61.538	Chinchilla_lanigera
ENSMZEG00005003157	r3hdm1	99	46.924	ENSCSAG00000016356	R3HDM1	89	47.866	Chlorocebus_sabaeus
ENSMZEG00005003157	r3hdm1	77	64.122	ENSCHOG00000013638	R3HDM1	69	64.122	Choloepus_hoffmanni
ENSMZEG00005003157	r3hdm1	82	70.144	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSMZEG00005003157	r3hdm1	95	58.519	ENSCANG00000034748	R3HDM1	87	60.836	Colobus_angolensis_palliatus
ENSMZEG00005003157	r3hdm1	99	47.349	ENSCGRG00001012357	R3hdm1	86	47.539	Cricetulus_griseus_chok1gshd
ENSMZEG00005003157	r3hdm1	92	58.206	ENSCGRG00000012080	R3hdm1	100	62.876	Cricetulus_griseus_crigri
ENSMZEG00005003157	r3hdm1	100	70.818	ENSCSEG00000008944	r3hdm1	100	71.707	Cynoglossus_semilaevis
ENSMZEG00005003157	r3hdm1	100	80.241	ENSCVAG00000007582	r3hdm1	100	80.241	Cyprinodon_variegatus
ENSMZEG00005003157	r3hdm1	87	60.047	ENSDNOG00000000771	R3HDM1	89	47.303	Dasypus_novemcinctus
ENSMZEG00005003157	r3hdm1	91	56.725	ENSETEG00000013606	R3HDM1	89	44.884	Echinops_telfairi
ENSMZEG00005003157	r3hdm1	50	45.472	ENSEBUG00000014746	arpp21	97	40.719	Eptatretus_burgeri
ENSMZEG00005003157	r3hdm1	89	68.269	ENSEASG00005007392	R3HDM1	88	60.859	Equus_asinus_asinus
ENSMZEG00005003157	r3hdm1	89	68.269	ENSECAG00000019114	R3HDM1	88	60.859	Equus_caballus
ENSMZEG00005003157	r3hdm1	58	53.244	ENSEEUG00000012589	R3HDM1	53	52.672	Erinaceus_europaeus
ENSMZEG00005003157	r3hdm1	87	54.051	ENSELUG00000014413	r3hdm1	83	54.084	Esox_lucius
ENSMZEG00005003157	r3hdm1	96	51.282	ENSELUG00000004909	R3HDM1	87	51.698	Esox_lucius
ENSMZEG00005003157	r3hdm1	89	68.269	ENSFCAG00000027113	R3HDM1	88	61.176	Felis_catus
ENSMZEG00005003157	r3hdm1	84	49.669	ENSFALG00000013731	R3HDM1	90	44.806	Ficedula_albicollis
ENSMZEG00005003157	r3hdm1	99	48.048	ENSFDAG00000016478	R3HDM1	100	62.542	Fukomys_damarensis
ENSMZEG00005003157	r3hdm1	100	80.248	ENSFHEG00000018713	r3hdm1	100	80.344	Fundulus_heteroclitus
ENSMZEG00005003157	r3hdm1	67	63.808	ENSGMOG00000006042	-	79	56.771	Gadus_morhua
ENSMZEG00005003157	r3hdm1	91	59.947	ENSGALG00000012246	R3HDM1	85	64.078	Gallus_gallus
ENSMZEG00005003157	r3hdm1	100	75.300	ENSGAFG00000006203	r3hdm1	100	75.900	Gambusia_affinis
ENSMZEG00005003157	r3hdm1	95	81.508	ENSGACG00000014925	r3hdm1	95	80.986	Gasterosteus_aculeatus
ENSMZEG00005003157	r3hdm1	91	59.804	ENSGAGG00000007840	R3HDM1	84	59.804	Gopherus_agassizii
ENSMZEG00005003157	r3hdm1	95	57.108	ENSGGOG00000008156	R3HDM1	87	62.133	Gorilla_gorilla
ENSMZEG00005003157	r3hdm1	54	100.000	ENSHBUG00000015737	R3HDM1	96	100.000	Haplochromis_burtoni
ENSMZEG00005003157	r3hdm1	99	47.952	ENSHGLG00000015718	R3HDM1	100	62.081	Heterocephalus_glaber_female
ENSMZEG00005003157	r3hdm1	90	41.567	ENSHGLG00100015374	-	91	38.333	Heterocephalus_glaber_male
ENSMZEG00005003157	r3hdm1	99	48.052	ENSHGLG00100003184	-	100	62.914	Heterocephalus_glaber_male
ENSMZEG00005003157	r3hdm1	100	69.940	ENSHCOG00000013366	r3hdm1	100	69.742	Hippocampus_comes
ENSMZEG00005003157	r3hdm1	87	70.625	ENSIPUG00000001676	R3HDM1	100	62.530	Ictalurus_punctatus
ENSMZEG00005003157	r3hdm1	91	62.432	ENSIPUG00000013629	r3hdm1	82	68.954	Ictalurus_punctatus
ENSMZEG00005003157	r3hdm1	93	58.206	ENSSTOG00000007572	R3HDM1	100	62.876	Ictidomys_tridecemlineatus
ENSMZEG00005003157	r3hdm1	91	62.648	ENSLACG00000005334	R3HDM1	87	51.028	Latimeria_chalumnae
ENSMZEG00005003157	r3hdm1	99	50.726	ENSLOCG00000001641	r3hdm1	90	50.973	Lepisosteus_oculatus
ENSMZEG00005003157	r3hdm1	99	48.141	ENSLAFG00000009065	R3HDM1	85	66.572	Loxodonta_africana
ENSMZEG00005003157	r3hdm1	95	60.621	ENSMFAG00000030331	R3HDM1	88	61.337	Macaca_fascicularis
ENSMZEG00005003157	r3hdm1	95	57.108	ENSMMUG00000009844	R3HDM1	87	62.133	Macaca_mulatta
ENSMZEG00005003157	r3hdm1	95	60.621	ENSMNEG00000027793	R3HDM1	88	61.337	Macaca_nemestrina
ENSMZEG00005003157	r3hdm1	95	57.108	ENSMLEG00000043189	R3HDM1	87	62.133	Mandrillus_leucophaeus
ENSMZEG00005003157	r3hdm1	100	86.273	ENSMAMG00000004532	r3hdm1	100	86.273	Mastacembelus_armatus
ENSMZEG00005003157	r3hdm1	88	57.008	ENSMGAG00000012461	R3HDM1	88	48.166	Meleagris_gallopavo
ENSMZEG00005003157	r3hdm1	99	47.436	ENSMAUG00000010315	R3hdm1	100	62.876	Mesocricetus_auratus
ENSMZEG00005003157	r3hdm1	95	57.108	ENSMICG00000042655	-	92	61.600	Microcebus_murinus
ENSMZEG00005003157	r3hdm1	95	57.353	ENSMICG00000005900	-	87	61.867	Microcebus_murinus
ENSMZEG00005003157	r3hdm1	50	58.175	ENSMOCG00000019833	-	100	62.542	Microtus_ochrogaster
ENSMZEG00005003157	r3hdm1	99	46.691	ENSMODG00000000923	R3HDM1	96	46.480	Monodelphis_domestica
ENSMZEG00005003157	r3hdm1	100	84.253	ENSMALG00000009000	r3hdm1	90	84.152	Monopterus_albus
ENSMZEG00005003157	r3hdm1	99	47.349	MGP_CAROLIEiJ_G0014543	R3hdm1	100	62.876	Mus_caroli
ENSMZEG00005003157	r3hdm1	99	47.163	ENSMUSG00000056211	R3hdm1	100	62.876	Mus_musculus
ENSMZEG00005003157	r3hdm1	99	46.791	MGP_PahariEiJ_G0027779	R3hdm1	100	62.876	Mus_pahari
ENSMZEG00005003157	r3hdm1	99	47.256	MGP_SPRETEiJ_G0015350	R3hdm1	100	62.876	Mus_spretus
ENSMZEG00005003157	r3hdm1	93	57.824	ENSMPUG00000002412	R3HDM1	89	49.128	Mustela_putorius_furo
ENSMZEG00005003157	r3hdm1	99	48.306	ENSMLUG00000013824	R3HDM1	89	48.596	Myotis_lucifugus
ENSMZEG00005003157	r3hdm1	95	57.353	ENSNLEG00000008622	R3HDM1	87	62.133	Nomascus_leucogenys
ENSMZEG00005003157	r3hdm1	94	43.654	ENSMEUG00000011784	R3HDM1	93	44.351	Notamacropus_eugenii
ENSMZEG00005003157	r3hdm1	99	46.698	ENSODEG00000008607	R3HDM1	100	62.207	Octodon_degus
ENSMZEG00005003157	r3hdm1	95	94.318	ENSONIG00000012017	r3hdm1	89	94.318	Oreochromis_niloticus
ENSMZEG00005003157	r3hdm1	99	46.432	ENSOANG00000007987	R3HDM1	89	47.469	Ornithorhynchus_anatinus
ENSMZEG00005003157	r3hdm1	92	57.854	ENSOCUG00000017366	R3HDM1	97	48.887	Oryctolagus_cuniculus
ENSMZEG00005003157	r3hdm1	100	74.760	ENSORLG00000004297	r3hdm1	100	75.336	Oryzias_latipes
ENSMZEG00005003157	r3hdm1	100	75.375	ENSORLG00015017355	r3hdm1	100	75.976	Oryzias_latipes_hsok
ENSMZEG00005003157	r3hdm1	54	80.000	ENSOMEG00000003882	-	96	81.503	Oryzias_melastigma
ENSMZEG00005003157	r3hdm1	99	48.696	ENSOGAG00000003136	R3HDM1	89	49.082	Otolemur_garnettii
ENSMZEG00005003157	r3hdm1	93	57.663	ENSOARG00000010788	R3HDM1	89	49.709	Ovis_aries
ENSMZEG00005003157	r3hdm1	95	57.108	ENSPPAG00000027858	R3HDM1	87	62.133	Pan_paniscus
ENSMZEG00005003157	r3hdm1	95	57.005	ENSPPRG00000002626	R3HDM1	87	61.942	Panthera_pardus
ENSMZEG00005003157	r3hdm1	95	57.246	ENSPTIG00000016581	R3HDM1	87	62.205	Panthera_tigris_altaica
ENSMZEG00005003157	r3hdm1	95	57.108	ENSPTRG00000012494	R3HDM1	87	62.133	Pan_troglodytes
ENSMZEG00005003157	r3hdm1	95	57.108	ENSPANG00000026448	R3HDM1	87	62.133	Papio_anubis
ENSMZEG00005003157	r3hdm1	89	73.355	ENSPKIG00000004328	r3hdm1	78	72.368	Paramormyrops_kingsleyae
ENSMZEG00005003157	r3hdm1	99	47.637	ENSPSIG00000012915	R3HDM1	88	47.780	Pelodiscus_sinensis
ENSMZEG00005003157	r3hdm1	99	47.261	ENSPEMG00000015187	R3hdm1	100	62.876	Peromyscus_maniculatus_bairdii
ENSMZEG00005003157	r3hdm1	95	38.432	ENSPMAG00000003369	-	95	39.601	Petromyzon_marinus
ENSMZEG00005003157	r3hdm1	89	66.987	ENSPCIG00000002491	R3HDM1	88	59.198	Phascolarctos_cinereus
ENSMZEG00005003157	r3hdm1	100	79.658	ENSPFOG00000015036	r3hdm1	100	79.373	Poecilia_formosa
ENSMZEG00005003157	r3hdm1	100	76.068	ENSPLAG00000018042	r3hdm1	100	75.996	Poecilia_latipinna
ENSMZEG00005003157	r3hdm1	100	75.694	ENSPMEG00000023947	r3hdm1	100	75.622	Poecilia_mexicana
ENSMZEG00005003157	r3hdm1	100	79.218	ENSPREG00000007902	r3hdm1	100	79.641	Poecilia_reticulata
ENSMZEG00005003157	r3hdm1	92	56.952	ENSPPYG00000012815	R3HDM1	89	47.830	Pongo_abelii
ENSMZEG00005003157	r3hdm1	82	69.432	ENSPCAG00000006208	R3HDM1	68	69.130	Procavia_capensis
ENSMZEG00005003157	r3hdm1	82	71.841	ENSPCOG00000012698	R3HDM1	79	71.841	Propithecus_coquereli
ENSMZEG00005003157	r3hdm1	92	53.817	ENSPVAG00000006098	R3HDM1	89	43.204	Pteropus_vampyrus
ENSMZEG00005003157	r3hdm1	86	72.876	ENSPNAG00000013952	r3hdm1	81	70.774	Pygocentrus_nattereri
ENSMZEG00005003157	r3hdm1	82	72.222	ENSPNAG00000005436	R3HDM1	87	71.242	Pygocentrus_nattereri
ENSMZEG00005003157	r3hdm1	99	46.636	ENSRNOG00000004099	R3hdm1	89	47.349	Rattus_norvegicus
ENSMZEG00005003157	r3hdm1	82	71.942	ENSRBIG00000033317	R3HDM1	86	71.942	Rhinopithecus_bieti
ENSMZEG00005003157	r3hdm1	86	68.590	ENSRROG00000034534	R3HDM1	87	62.133	Rhinopithecus_roxellana
ENSMZEG00005003157	r3hdm1	95	57.108	ENSSBOG00000020389	R3HDM1	87	62.133	Saimiri_boliviensis_boliviensis
ENSMZEG00005003157	r3hdm1	92	58.091	ENSSHAG00000016999	R3HDM1	89	48.359	Sarcophilus_harrisii
ENSMZEG00005003157	r3hdm1	100	49.086	ENSSFOG00015019851	-	94	55.978	Scleropages_formosus
ENSMZEG00005003157	r3hdm1	92	65.770	ENSSFOG00015014134	r3hdm1	88	65.037	Scleropages_formosus
ENSMZEG00005003157	r3hdm1	100	81.943	ENSSMAG00000001669	r3hdm1	90	81.943	Scophthalmus_maximus
ENSMZEG00005003157	r3hdm1	100	87.154	ENSSDUG00000010749	r3hdm1	100	87.648	Seriola_dumerili
ENSMZEG00005003157	r3hdm1	100	88.048	ENSSLDG00000004499	r3hdm1	90	89.044	Seriola_lalandi_dorsalis
ENSMZEG00005003157	r3hdm1	56	51.792	ENSSARG00000000352	-	52	52.769	Sorex_araneus
ENSMZEG00005003157	r3hdm1	99	47.810	ENSSPUG00000004167	R3HDM1	88	48.987	Sphenodon_punctatus
ENSMZEG00005003157	r3hdm1	100	89.526	ENSSPAG00000004648	r3hdm1	100	89.879	Stegastes_partitus
ENSMZEG00005003157	r3hdm1	95	58.871	ENSSSCG00000015692	R3HDM1	87	58.871	Sus_scrofa
ENSMZEG00005003157	r3hdm1	96	48.448	ENSTGUG00000011750	R3HDM1	89	47.834	Taeniopygia_guttata
ENSMZEG00005003157	r3hdm1	100	76.293	ENSTRUG00000011654	r3hdm1	99	76.390	Takifugu_rubripes
ENSMZEG00005003157	r3hdm1	97	72.183	ENSTNIG00000010362	r3hdm1	98	72.284	Tetraodon_nigroviridis
ENSMZEG00005003157	r3hdm1	86	62.590	ENSTTRG00000003935	R3HDM1	89	45.570	Tursiops_truncatus
ENSMZEG00005003157	r3hdm1	74	62.667	ENSUAMG00000024806	R3HDM1	93	61.867	Ursus_americanus
ENSMZEG00005003157	r3hdm1	95	61.867	ENSUMAG00000005552	R3HDM1	87	61.867	Ursus_maritimus
ENSMZEG00005003157	r3hdm1	88	47.235	ENSVPAG00000007333	R3HDM1	73	49.413	Vicugna_pacos
ENSMZEG00005003157	r3hdm1	95	61.867	ENSVVUG00000006457	R3HDM1	88	61.867	Vulpes_vulpes
ENSMZEG00005003157	r3hdm1	94	44.136	ENSXETG00000019330	r3hdm1	91	45.890	Xenopus_tropicalis
ENSMZEG00005003157	r3hdm1	75	74.702	ENSXCOG00000017448	r3hdm1	93	75.497	Xiphophorus_couchianus
ENSMZEG00005003157	r3hdm1	100	78.695	ENSXMAG00000007885	r3hdm1	100	78.756	Xiphophorus_maculatus